Wall clock time and date at job start Mon Mar 30 2020 03:14:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.35892 * 126.39365 * 2 1 4 4 C 1.50693 * 124.94067 * 0.04836 * 3 2 1 5 5 C 1.50705 * 109.47216 * 89.99783 * 4 3 2 6 6 H 1.08000 * 119.99929 * 359.97438 * 5 4 3 7 7 C 1.37878 * 120.00241 * 180.02562 * 5 4 3 8 8 N 1.31519 * 119.99823 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00281 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47065 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47181 * 119.99657 * 9 7 5 12 12 H 1.48501 * 109.47182 * 239.99830 * 9 7 5 13 13 N 1.30197 * 110.11091 * 180.02562 * 3 2 1 14 14 C 1.35677 * 109.74937 * 0.02562 * 13 3 2 15 15 N 1.33109 * 133.32148 * 179.97438 * 14 13 3 16 16 C 1.31514 * 121.52945 * 180.02562 * 15 14 13 17 17 C 1.38627 * 121.41231 * 359.97438 * 16 15 14 18 18 C 1.38401 * 119.46907 * 359.97205 * 17 16 15 19 19 C 1.37984 * 126.38163 * 180.02562 * 2 1 3 20 20 H 1.09004 * 109.47209 * 270.00221 * 1 2 3 21 21 H 1.09002 * 109.46983 * 29.99048 * 1 2 3 22 22 H 1.08994 * 109.47977 * 149.99688 * 1 2 3 23 23 H 1.09000 * 109.47510 * 209.99775 * 4 3 2 24 24 H 1.09007 * 109.47553 * 329.99799 * 4 3 2 25 25 H 0.97000 * 119.99889 * 180.02562 * 8 7 5 26 26 H 1.07996 * 119.29924 * 179.72322 * 16 15 14 27 27 H 1.08003 * 120.26609 * 179.97438 * 17 16 15 28 28 H 1.08007 * 120.90353 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2712 1.0939 0.0000 4 6 1.7889 2.5215 0.0010 5 6 1.6291 2.9968 1.4222 6 1 1.8538 2.3313 2.2427 7 6 1.1949 4.2807 1.6752 8 7 0.9207 5.0909 0.6761 9 14 0.9974 4.8700 3.4367 10 1 1.3681 3.7754 4.3693 11 1 1.8818 6.0399 3.6694 12 1 -0.4153 5.2628 3.6719 13 7 3.5210 0.7288 -0.0005 14 6 3.6030 -0.6255 -0.0015 15 7 4.6248 -1.4785 -0.0028 16 6 4.4344 -2.7798 -0.0040 17 6 3.1592 -3.3233 -0.0035 18 6 2.0603 -2.4819 -0.0011 19 6 2.2834 -1.1109 -0.0005 20 1 -0.3634 0.0000 1.0277 21 1 -0.3633 0.8901 -0.5137 22 1 -0.3635 -0.8899 -0.5138 23 1 2.5155 3.1509 -0.5129 24 1 0.8291 2.5813 -0.5122 25 1 0.6156 5.9943 0.8540 26 1 5.2898 -3.4390 -0.0096 27 1 3.0242 -4.3949 -0.0050 28 1 1.0565 -2.8804 -0.0011 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075577210.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:35 Heat of formation + Delta-G solvation = 79.805458 kcal Electronic energy + Delta-G solvation = -13842.055678 eV Core-core repulsion = 11472.797240 eV Total energy + Delta-G solvation = -2369.258439 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.79127 -38.00741 -33.87011 -33.39892 -31.49467 -30.43398 -27.86006 -26.64589 -24.10970 -22.41660 -21.86933 -19.47422 -17.43633 -16.75159 -16.60555 -15.74622 -15.34694 -14.66482 -13.99456 -13.38477 -13.33509 -12.80361 -12.56507 -12.47975 -12.08177 -11.56410 -11.52745 -10.86652 -10.81795 -10.42762 -10.12965 -10.01107 -9.58389 -8.67006 -8.60608 -8.22253 -7.88568 -6.22931 -4.27982 1.23423 1.66967 3.04359 3.21783 3.25936 3.31401 3.38010 4.24496 4.32292 4.40203 4.81591 5.02392 5.13507 5.13880 5.22094 5.49519 5.54315 5.67038 5.75521 5.84191 6.24964 6.45086 6.61980 6.87278 7.15325 7.30332 7.60239 7.71931 8.01386 8.23454 8.68998 8.74091 9.36983 10.87138 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.046780 B = 0.007466 C = 0.007199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.403700 B = 3749.315685 C = 3888.762676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.492 5.492 3 C 0.364 3.636 4 C 0.085 3.915 5 C -0.517 4.517 6 H 0.059 0.941 7 C 0.065 3.935 8 N -0.889 5.889 9 Si 0.902 3.098 10 H -0.272 1.272 11 H -0.280 1.280 12 H -0.282 1.282 13 N -0.505 5.505 14 C 0.257 3.743 15 N -0.454 5.454 16 C 0.106 3.894 17 C -0.185 4.185 18 C -0.061 4.061 19 C -0.021 4.021 20 H 0.075 0.925 21 H 0.095 0.905 22 H 0.073 0.927 23 H 0.063 0.937 24 H 0.045 0.955 25 H 0.266 0.734 26 H 0.157 0.843 27 H 0.135 0.865 28 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.722 -13.286 -1.743 13.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.182 5.182 3 C 0.098 3.902 4 C 0.046 3.954 5 C -0.556 4.556 6 H 0.078 0.922 7 C -0.138 4.138 8 N -0.527 5.527 9 Si 0.730 3.270 10 H -0.197 1.197 11 H -0.206 1.206 12 H -0.208 1.208 13 N -0.226 5.226 14 C 0.013 3.987 15 N -0.164 5.164 16 C -0.064 4.064 17 C -0.207 4.207 18 C -0.090 4.090 19 C -0.133 4.133 20 H 0.094 0.906 21 H 0.114 0.886 22 H 0.091 0.909 23 H 0.081 0.919 24 H 0.063 0.937 25 H 0.075 0.925 26 H 0.174 0.826 27 H 0.153 0.847 28 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -1.391 -12.157 -1.795 12.367 hybrid contribution -1.746 -0.581 0.974 2.082 sum -3.137 -12.737 -0.821 13.143 Atomic orbital electron populations 1.21916 0.76181 1.03965 1.03673 1.45291 1.07374 1.04950 1.60538 1.25262 0.83650 0.92484 0.88843 1.18190 0.97587 0.79973 0.99623 1.20852 1.46084 0.98286 0.90388 0.92246 1.24937 0.94819 0.96237 0.97807 1.69940 1.44637 1.07252 1.30855 0.86359 0.77742 0.78941 0.84003 1.19656 1.20578 1.20815 1.70494 1.17962 1.08005 1.26089 1.19815 0.86600 0.91474 1.00771 1.66755 1.33706 1.02885 1.13069 1.22500 0.96406 0.90058 0.97390 1.21707 0.93078 1.00149 1.05745 1.20299 0.99663 0.89007 0.99989 1.19797 0.94054 0.90157 1.09340 0.90636 0.88604 0.90871 0.91937 0.93707 0.92460 0.82585 0.84681 0.85625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.23 10.97 59.84 0.66 1.88 15 2 N -0.49 -9.55 3.20 -118.50 -0.38 -9.93 15 3 C 0.36 8.42 7.04 -154.89 -1.09 7.33 15 4 C 0.08 2.10 5.27 -29.04 -0.15 1.95 15 5 C -0.52 -13.93 9.09 -34.44 -0.31 -14.24 15 6 H 0.06 1.64 7.74 -52.49 -0.41 1.24 15 7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 15 8 N -0.89 -24.72 13.29 55.43 0.74 -23.98 15 9 Si 0.90 20.85 29.54 -169.99 -5.02 15.83 15 10 H -0.27 -6.30 7.11 56.52 0.40 -5.90 15 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 15 12 H -0.28 -6.35 7.11 56.52 0.40 -5.94 15 13 N -0.50 -12.55 11.27 -9.79 -0.11 -12.66 15 14 C 0.26 5.73 8.37 -157.00 -1.31 4.42 15 15 N -0.45 -9.18 10.41 -12.66 -0.13 -9.31 15 16 C 0.11 1.58 11.15 -17.54 -0.20 1.39 15 17 C -0.18 -2.38 10.10 -39.38 -0.40 -2.78 15 18 C -0.06 -0.89 10.18 -39.28 -0.40 -1.29 15 19 C -0.02 -0.40 6.88 -83.96 -0.58 -0.98 15 20 H 0.08 1.04 8.14 -51.93 -0.42 0.62 15 21 H 0.10 1.37 7.00 -51.93 -0.36 1.01 15 22 H 0.07 0.81 8.14 -51.93 -0.42 0.38 15 23 H 0.06 1.67 8.14 -51.93 -0.42 1.24 15 24 H 0.04 1.07 7.01 -51.93 -0.36 0.70 15 25 H 0.27 6.96 8.31 -40.82 -0.34 6.62 15 26 H 0.16 1.69 8.06 -52.49 -0.42 1.27 15 27 H 0.14 1.18 8.06 -52.48 -0.42 0.76 15 28 H 0.13 1.41 8.06 -52.48 -0.42 0.99 15 LS Contribution 252.19 15.07 3.80 3.80 Total: -1.00 -32.19 252.19 -7.79 -39.98 By element: Atomic # 1 Polarization: -0.26 SS G_CDS: -2.81 Total: -3.07 kcal Atomic # 6 Polarization: 3.22 SS G_CDS: -3.88 Total: -0.67 kcal Atomic # 7 Polarization: -56.00 SS G_CDS: 0.11 Total: -55.88 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -32.19 -7.79 -39.98 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075577210.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.790 kcal (2) G-P(sol) polarization free energy of solvation -32.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.985 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds