Wall clock time and date at job start Mon Mar 30 2020 03:14:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.35892 * 126.39365 * 2 1 4 4 C 1.50693 * 124.94067 * 0.04836 * 3 2 1 5 5 C 1.50705 * 109.47216 * 89.99783 * 4 3 2 6 6 H 1.08000 * 119.99929 * 359.97438 * 5 4 3 7 7 C 1.37878 * 120.00241 * 180.02562 * 5 4 3 8 8 N 1.31519 * 119.99823 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00281 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47065 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47181 * 119.99657 * 9 7 5 12 12 H 1.48501 * 109.47182 * 239.99830 * 9 7 5 13 13 N 1.30197 * 110.11091 * 180.02562 * 3 2 1 14 14 C 1.35677 * 109.74937 * 0.02562 * 13 3 2 15 15 N 1.33109 * 133.32148 * 179.97438 * 14 13 3 16 16 C 1.31514 * 121.52945 * 180.02562 * 15 14 13 17 17 C 1.38627 * 121.41231 * 359.97438 * 16 15 14 18 18 C 1.38401 * 119.46907 * 359.97205 * 17 16 15 19 19 C 1.37984 * 126.38163 * 180.02562 * 2 1 3 20 20 H 1.09004 * 109.47209 * 270.00221 * 1 2 3 21 21 H 1.09002 * 109.46983 * 29.99048 * 1 2 3 22 22 H 1.08994 * 109.47977 * 149.99688 * 1 2 3 23 23 H 1.09000 * 109.47510 * 209.99775 * 4 3 2 24 24 H 1.09007 * 109.47553 * 329.99799 * 4 3 2 25 25 H 0.97000 * 119.99889 * 180.02562 * 8 7 5 26 26 H 1.07996 * 119.29924 * 179.72322 * 16 15 14 27 27 H 1.08003 * 120.26609 * 179.97438 * 17 16 15 28 28 H 1.08007 * 120.90353 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2712 1.0939 0.0000 4 6 1.7889 2.5215 0.0010 5 6 1.6291 2.9968 1.4222 6 1 1.8538 2.3313 2.2427 7 6 1.1949 4.2807 1.6752 8 7 0.9207 5.0909 0.6761 9 14 0.9974 4.8700 3.4367 10 1 1.3681 3.7754 4.3693 11 1 1.8818 6.0399 3.6694 12 1 -0.4153 5.2628 3.6719 13 7 3.5210 0.7288 -0.0005 14 6 3.6030 -0.6255 -0.0015 15 7 4.6248 -1.4785 -0.0028 16 6 4.4344 -2.7798 -0.0040 17 6 3.1592 -3.3233 -0.0035 18 6 2.0603 -2.4819 -0.0011 19 6 2.2834 -1.1109 -0.0005 20 1 -0.3634 0.0000 1.0277 21 1 -0.3633 0.8901 -0.5137 22 1 -0.3635 -0.8899 -0.5138 23 1 2.5155 3.1509 -0.5129 24 1 0.8291 2.5813 -0.5122 25 1 0.6156 5.9943 0.8540 26 1 5.2898 -3.4390 -0.0096 27 1 3.0242 -4.3949 -0.0050 28 1 1.0565 -2.8804 -0.0011 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075577210.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:35 Heat of formation + Delta-G solvation = 58.859835 kcal Electronic energy + Delta-G solvation = -13842.963949 eV Core-core repulsion = 11472.797240 eV Total energy + Delta-G solvation = -2370.166709 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.23604 -39.33492 -35.44766 -35.25144 -32.80083 -32.14367 -29.45492 -27.91196 -25.98160 -23.73033 -23.35058 -21.01195 -18.83296 -18.70688 -18.01621 -17.01060 -16.86673 -16.50588 -15.28465 -14.66023 -14.59023 -14.48146 -14.38374 -13.73575 -13.34830 -13.32928 -13.04848 -12.67432 -12.62522 -12.08076 -11.79191 -11.55601 -11.52546 -10.67702 -10.04774 -9.61814 -9.31776 -8.29057 -6.42288 -0.06251 0.42251 1.38115 1.41107 1.52351 1.67925 1.79034 2.38167 2.89418 3.01103 3.05239 3.53868 3.87419 4.04480 4.05312 4.16532 4.38980 4.52314 4.61269 4.66148 5.03433 5.07372 5.17152 5.24435 5.40087 5.61047 5.80915 5.91494 6.19491 6.63136 6.79972 7.25564 7.26390 8.81046 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.046780 B = 0.007466 C = 0.007199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.403700 B = 3749.315685 C = 3888.762676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.485 5.485 3 C 0.332 3.668 4 C 0.099 3.901 5 C -0.532 4.532 6 H 0.044 0.956 7 C 0.021 3.979 8 N -0.917 5.917 9 Si 0.968 3.032 10 H -0.274 1.274 11 H -0.278 1.278 12 H -0.266 1.266 13 N -0.553 5.553 14 C 0.200 3.800 15 N -0.498 5.498 16 C 0.108 3.892 17 C -0.156 4.156 18 C -0.056 4.056 19 C -0.031 4.031 20 H 0.081 0.919 21 H 0.089 0.911 22 H 0.116 0.884 23 H 0.028 0.972 24 H 0.047 0.953 25 H 0.271 0.729 26 H 0.198 0.802 27 H 0.194 0.806 28 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.929 -16.559 -1.057 17.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.173 5.173 3 C 0.065 3.935 4 C 0.061 3.939 5 C -0.570 4.570 6 H 0.063 0.937 7 C -0.180 4.180 8 N -0.556 5.556 9 Si 0.792 3.208 10 H -0.199 1.199 11 H -0.203 1.203 12 H -0.191 1.191 13 N -0.275 5.275 14 C -0.040 4.040 15 N -0.210 5.210 16 C -0.062 4.062 17 C -0.177 4.177 18 C -0.085 4.085 19 C -0.143 4.143 20 H 0.100 0.900 21 H 0.108 0.892 22 H 0.135 0.865 23 H 0.046 0.954 24 H 0.065 0.935 25 H 0.080 0.920 26 H 0.215 0.785 27 H 0.211 0.789 28 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -2.636 -15.430 -1.118 15.694 hybrid contribution -1.273 0.178 0.716 1.471 sum -3.908 -15.253 -0.402 15.751 Atomic orbital electron populations 1.22252 0.73559 1.05881 1.04652 1.45367 1.08762 1.04059 1.59125 1.24551 0.84251 0.92623 0.92072 1.17786 0.96575 0.81263 0.98310 1.20995 1.46408 0.98636 0.91008 0.93720 1.25730 0.94252 0.96142 1.01842 1.70027 1.45073 1.07687 1.32816 0.85363 0.78401 0.78088 0.78963 1.19884 1.20322 1.19083 1.70225 1.19455 1.10892 1.26953 1.19980 0.88957 0.90851 1.04236 1.66728 1.34312 1.04958 1.14963 1.23427 0.99315 0.88702 0.94772 1.22380 0.91314 1.02705 1.01285 1.20937 1.02571 0.86743 0.98240 1.20161 0.92543 0.91722 1.09920 0.90030 0.89188 0.86517 0.95419 0.93456 0.91986 0.78498 0.78905 0.81226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.12 10.97 127.77 1.40 3.52 15 2 N -0.48 -18.88 3.20 -528.82 -1.69 -20.57 15 3 C 0.33 16.25 7.04 137.94 0.97 17.22 15 4 C 0.10 5.25 5.27 29.10 0.15 5.40 15 5 C -0.53 -29.91 9.09 25.60 0.23 -29.67 15 6 H 0.04 2.58 7.74 -2.91 -0.02 2.56 15 7 C 0.02 1.13 5.46 84.65 0.46 1.60 15 8 N -0.92 -52.27 13.29 21.45 0.28 -51.99 15 9 Si 0.97 43.30 29.54 68.60 2.03 45.33 15 10 H -0.27 -12.26 7.11 99.48 0.71 -11.55 15 11 H -0.28 -12.26 7.11 99.48 0.71 -11.55 15 12 H -0.27 -11.15 7.11 99.48 0.71 -10.45 15 13 N -0.55 -29.21 11.27 -184.88 -2.08 -31.30 15 14 C 0.20 9.15 8.37 134.31 1.12 10.27 15 15 N -0.50 -20.01 10.41 -193.97 -2.02 -22.03 15 16 C 0.11 2.84 11.15 84.83 0.95 3.78 15 17 C -0.16 -3.11 10.10 22.40 0.23 -2.89 15 18 C -0.06 -1.39 10.18 22.47 0.23 -1.16 15 19 C -0.03 -1.15 6.88 38.91 0.27 -0.88 15 20 H 0.08 2.15 8.14 -2.38 -0.02 2.13 15 21 H 0.09 2.57 7.00 -2.39 -0.02 2.55 15 22 H 0.12 2.15 8.14 -2.39 -0.02 2.13 15 23 H 0.03 1.61 8.14 -2.39 -0.02 1.59 15 24 H 0.05 2.40 7.01 -2.38 -0.02 2.38 15 25 H 0.27 14.39 8.31 -92.71 -0.77 13.62 15 26 H 0.20 3.33 8.06 -2.91 -0.02 3.31 15 27 H 0.19 1.72 8.06 -2.91 -0.02 1.70 15 28 H 0.17 2.68 8.06 -2.91 -0.02 2.66 15 Total: -1.00 -75.98 252.19 3.70 -72.29 By element: Atomic # 1 Polarization: -0.10 SS G_CDS: 1.17 Total: 1.07 kcal Atomic # 6 Polarization: 1.18 SS G_CDS: 6.01 Total: 7.20 kcal Atomic # 7 Polarization: -120.37 SS G_CDS: -5.51 Total: -125.88 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Total: -75.98 3.70 -72.29 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075577210.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.145 kcal (2) G-P(sol) polarization free energy of solvation -75.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds