Wall clock time and date at job start Mon Mar 30 2020 03:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36114 * 126.27852 * 2 1 4 4 C 1.50705 * 124.95299 * 0.02562 * 3 2 1 5 5 C 1.50699 * 109.46961 * 90.00234 * 4 3 2 6 6 H 1.08000 * 120.00227 * 0.02562 * 5 4 3 7 7 C 1.37882 * 119.99870 * 179.97438 * 5 4 3 8 8 N 1.31510 * 119.99962 * 180.02562 * 7 5 4 9 9 Si 1.86794 * 119.99846 * 0.02562 * 7 5 4 10 10 H 1.48499 * 109.47280 * 90.00000 * 9 7 5 11 11 H 1.48506 * 109.47033 * 209.99718 * 9 7 5 12 12 H 1.48502 * 109.47599 * 329.99947 * 9 7 5 13 13 N 1.30105 * 110.08747 * 180.02562 * 3 2 1 14 14 C 1.35668 * 109.49896 * 359.97438 * 13 3 2 15 15 C 1.39830 * 133.87595 * 180.02562 * 14 13 3 16 16 C 1.38175 * 118.15995 * 180.02562 * 15 14 13 17 17 C 1.38621 * 119.55242 * 359.97438 * 16 15 14 18 18 N 1.31684 * 121.35948 * 0.02562 * 17 16 15 19 19 C 1.32358 * 121.57868 * 359.97438 * 18 17 16 20 20 H 1.09001 * 109.46493 * 269.99587 * 1 2 3 21 21 H 1.08991 * 109.46956 * 30.00037 * 1 2 3 22 22 H 1.09003 * 109.47100 * 150.00531 * 1 2 3 23 23 H 1.09002 * 109.47210 * 210.00033 * 4 3 2 24 24 H 1.08997 * 109.46928 * 329.99962 * 4 3 2 25 25 H 0.96995 * 120.00220 * 180.02562 * 8 7 5 26 26 H 1.08003 * 120.92352 * 359.97438 * 15 14 13 27 27 H 1.07994 * 120.22758 * 179.72836 * 16 15 14 28 28 H 1.07998 * 119.31868 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2704 1.0973 0.0000 4 6 1.7855 2.5242 0.0006 5 6 1.6245 2.9994 1.4216 6 1 1.8510 2.3349 2.2422 7 6 1.1889 4.2830 1.6740 8 7 1.0489 4.6979 2.9141 9 14 0.7978 5.4327 0.2546 10 1 -0.6316 5.2873 -0.1207 11 1 1.0613 6.8350 0.6664 12 1 1.6527 5.0898 -0.9102 13 7 3.5198 0.7345 -0.0005 14 6 3.5981 -0.6199 -0.0004 15 6 4.6603 -1.5293 -0.0003 16 6 4.3634 -2.8788 -0.0006 17 6 3.0388 -3.2874 -0.0005 18 7 2.0525 -2.4149 -0.0006 19 6 2.2805 -1.1111 -0.0002 20 1 -0.3632 -0.0001 1.0277 21 1 -0.3633 0.8899 -0.5138 22 1 -0.3633 -0.8901 -0.5138 23 1 2.5111 3.1547 -0.5134 24 1 0.8258 2.5820 -0.5129 25 1 0.7421 5.6008 3.0917 26 1 5.6845 -1.1865 -0.0008 27 1 5.1579 -3.6103 -0.0050 28 1 2.8111 -4.3431 -0.0012 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075577211.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:15 Heat of formation + Delta-G solvation = 60.870378 kcal Electronic energy + Delta-G solvation = -13869.040611 eV Core-core repulsion = 11498.961085 eV Total energy + Delta-G solvation = -2370.079525 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.26763 -39.36334 -35.41989 -35.32983 -32.71545 -32.62715 -29.66193 -28.01106 -25.74527 -23.74384 -23.25424 -21.04664 -19.14059 -18.89598 -18.03600 -17.04528 -16.97325 -16.29429 -15.33936 -14.98371 -14.50336 -14.40197 -14.22605 -13.93962 -13.52083 -13.34716 -13.32810 -12.59853 -12.47364 -11.91548 -11.76296 -11.71747 -11.66110 -10.82920 -10.14775 -9.63296 -9.30581 -8.34243 -6.44051 -0.09199 0.35659 1.38765 1.43049 1.46585 1.54554 1.83785 2.33909 2.89635 2.98964 3.17474 3.43313 3.68973 4.00114 4.11443 4.19067 4.31297 4.48559 4.57869 4.65173 4.81911 4.92337 5.12671 5.22046 5.35741 5.40294 5.78848 5.98656 6.17396 6.58891 6.88071 6.92909 7.19064 8.82406 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.051752 B = 0.007665 C = 0.007320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.910215 B = 3651.988626 C = 3824.066263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.484 5.484 3 C 0.324 3.676 4 C 0.064 3.936 5 C -0.527 4.527 6 H 0.019 0.981 7 C 0.018 3.982 8 N -0.943 5.943 9 Si 0.953 3.047 10 H -0.253 1.253 11 H -0.283 1.283 12 H -0.242 1.242 13 N -0.535 5.535 14 C -0.032 4.032 15 C -0.041 4.041 16 C -0.167 4.167 17 C 0.125 3.875 18 N -0.502 5.502 19 C 0.201 3.799 20 H 0.069 0.931 21 H 0.103 0.897 22 H 0.103 0.897 23 H 0.060 0.940 24 H 0.065 0.935 25 H 0.272 0.728 26 H 0.153 0.847 27 H 0.190 0.810 28 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.405 -13.265 -9.457 16.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.175 5.175 3 C 0.058 3.942 4 C 0.026 3.974 5 C -0.565 4.565 6 H 0.037 0.963 7 C -0.180 4.180 8 N -0.582 5.582 9 Si 0.774 3.226 10 H -0.177 1.177 11 H -0.209 1.209 12 H -0.165 1.165 13 N -0.255 5.255 14 C -0.153 4.153 15 C -0.069 4.069 16 C -0.189 4.189 17 C -0.042 4.042 18 N -0.216 5.216 19 C -0.032 4.032 20 H 0.088 0.912 21 H 0.122 0.878 22 H 0.121 0.879 23 H 0.078 0.922 24 H 0.083 0.917 25 H 0.081 0.919 26 H 0.171 0.829 27 H 0.207 0.793 28 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 0.986 -12.811 -9.351 15.891 hybrid contribution -0.054 0.660 0.273 0.717 sum 0.932 -12.151 -9.078 15.196 Atomic orbital electron populations 1.22148 0.74063 1.05644 1.04042 1.45175 1.08749 1.03809 1.59790 1.24143 0.84907 0.91409 0.93719 1.18338 0.98156 0.83371 0.97581 1.20745 1.46553 0.98889 0.90358 0.96306 1.25917 0.93920 0.99265 0.98913 1.70036 1.47239 1.19264 1.21682 0.85632 0.80318 0.77353 0.79298 1.17689 1.20861 1.16518 1.70418 1.18695 1.11301 1.25096 1.20421 0.95095 0.91610 1.08210 1.21133 0.97907 0.92058 0.95767 1.22318 0.99220 0.95034 1.02321 1.23397 0.87737 0.99456 0.93605 1.66414 1.39432 0.98773 1.16935 1.19233 0.89534 0.88687 1.05793 0.91190 0.87829 0.87879 0.92242 0.91719 0.91913 0.82914 0.79310 0.77602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.61 10.97 127.77 1.40 4.02 15 2 N -0.48 -19.92 3.20 -534.62 -1.71 -21.64 15 3 C 0.32 15.11 7.04 137.90 0.97 16.08 15 4 C 0.06 3.04 4.33 29.10 0.13 3.16 15 5 C -0.53 -30.20 9.65 25.60 0.25 -29.95 15 6 H 0.02 1.24 7.98 -2.91 -0.02 1.22 15 7 C 0.02 1.04 5.47 84.66 0.46 1.50 15 8 N -0.94 -57.81 13.96 21.45 0.30 -57.51 15 9 Si 0.95 41.16 27.47 68.60 1.88 43.04 15 10 H -0.25 -10.05 7.11 99.48 0.71 -9.34 15 11 H -0.28 -12.20 7.11 99.48 0.71 -11.49 15 12 H -0.24 -9.63 6.54 99.48 0.65 -8.98 15 13 N -0.53 -25.62 11.28 -179.82 -2.03 -27.64 15 14 C -0.03 -1.33 7.24 39.52 0.29 -1.04 15 15 C -0.04 -1.25 10.22 22.64 0.23 -1.01 15 16 C -0.17 -3.58 10.09 22.35 0.23 -3.35 15 17 C 0.13 2.94 11.16 84.81 0.95 3.89 15 18 N -0.50 -16.77 10.38 -192.74 -2.00 -18.77 15 19 C 0.20 8.06 8.01 133.84 1.07 9.13 15 20 H 0.07 2.30 8.14 -2.39 -0.02 2.28 15 21 H 0.10 2.95 6.99 -2.39 -0.02 2.93 15 22 H 0.10 2.74 8.14 -2.39 -0.02 2.72 15 23 H 0.06 2.78 7.20 -2.39 -0.02 2.76 15 24 H 0.06 2.65 6.43 -2.39 -0.02 2.63 15 25 H 0.27 15.37 8.31 -92.71 -0.77 14.60 15 26 H 0.15 3.94 8.06 -2.91 -0.02 3.91 15 27 H 0.19 2.08 8.06 -2.91 -0.02 2.06 15 28 H 0.21 2.72 8.06 -2.91 -0.02 2.70 15 Total: -1.00 -75.62 248.60 3.53 -72.09 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: 1.11 Total: 8.00 kcal Atomic # 6 Polarization: -3.55 SS G_CDS: 5.97 Total: 2.42 kcal Atomic # 7 Polarization: -120.11 SS G_CDS: -5.44 Total: -125.55 kcal Atomic # 14 Polarization: 41.16 SS G_CDS: 1.88 Total: 43.04 kcal Total: -75.62 3.53 -72.09 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075577211.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.964 kcal (2) G-P(sol) polarization free energy of solvation -75.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds