Wall clock time and date at job start Mon Mar 30 2020 02:43:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30107 * 124.97623 * 2 1 4 4 C 1.35925 * 109.74293 * 180.24819 * 3 2 1 5 5 C 1.39635 * 133.42353 * 179.76787 * 4 3 2 6 6 C 1.38388 * 119.71277 * 179.97438 * 5 4 3 7 7 N 1.39803 * 119.82300 * 180.02562 * 6 5 4 8 8 C 1.39337 * 120.35143 * 359.97438 * 6 5 4 9 9 C 1.37839 * 120.36739 * 0.02562 * 8 6 5 10 10 C 1.38756 * 119.93707 * 359.97438 * 9 8 6 11 11 N 1.36527 * 124.97720 * 179.81063 * 2 1 3 12 12 C 1.37273 * 126.39935 * 0.02562 * 11 2 1 13 13 H 1.08000 * 120.00037 * 323.47715 * 12 11 2 14 14 C 1.38893 * 119.99949 * 143.48523 * 12 11 2 15 15 N 1.31403 * 119.99887 * 340.40457 * 14 12 11 16 16 Si 1.86798 * 120.00250 * 160.40941 * 14 12 11 17 17 H 1.48502 * 109.46858 * 269.99687 * 16 14 12 18 18 H 1.48501 * 109.47161 * 29.99214 * 16 14 12 19 19 H 1.48496 * 109.47338 * 149.99987 * 16 14 12 20 20 H 1.08997 * 109.47084 * 275.33796 * 1 2 3 21 21 H 1.09000 * 109.46786 * 35.33679 * 1 2 3 22 22 H 1.09001 * 109.46990 * 155.33813 * 1 2 3 23 23 H 1.08004 * 120.14434 * 359.95299 * 5 4 3 24 24 H 0.97001 * 120.00148 * 359.97438 * 7 6 5 25 25 H 0.96999 * 119.99962 * 180.02562 * 7 6 5 26 26 H 1.07999 * 119.81381 * 179.97438 * 8 6 5 27 27 H 1.08005 * 120.03296 * 179.97438 * 9 8 6 28 28 H 0.96995 * 120.00245 * 175.57575 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2528 1.0661 0.0000 4 6 3.5643 0.7089 -0.0055 5 6 4.7569 1.4353 -0.0121 6 6 5.9679 0.7656 -0.0162 7 7 7.1633 1.4905 -0.0222 8 6 6.0021 -0.6274 -0.0133 9 6 4.8303 -1.3532 -0.0068 10 6 3.6085 -0.6957 -0.0026 11 7 2.2896 -1.1187 0.0037 12 6 1.8513 -2.4195 0.0075 13 1 0.9663 -2.6895 0.5646 14 6 2.5459 -3.3885 -0.7050 15 7 3.3642 -3.0340 -1.6701 16 14 2.3167 -5.1957 -0.2916 17 1 3.3080 -5.5973 0.7385 18 1 0.9439 -5.4137 0.2311 19 1 2.5160 -6.0127 -1.5155 20 1 -0.3633 0.0956 1.0232 21 1 -0.3633 0.8383 -0.5944 22 1 -0.3633 -0.9339 -0.4288 23 1 4.7343 2.5151 -0.0143 24 1 7.1424 2.4603 -0.0238 25 1 8.0135 1.0237 -0.0254 26 1 6.9521 -1.1412 -0.0169 27 1 4.8632 -2.4328 -0.0050 28 1 3.8975 -3.7046 -2.1247 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075972659.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:57 Heat of formation + Delta-G solvation = 62.904419 kcal Electronic energy + Delta-G solvation = -14231.434125 eV Core-core repulsion = 11861.442803 eV Total energy + Delta-G solvation = -2369.991323 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.58830 -36.92051 -34.04984 -32.77410 -31.11395 -29.76200 -28.24933 -25.88029 -24.85795 -21.14961 -20.86066 -19.25974 -17.64154 -16.52586 -15.89421 -15.31432 -14.71713 -14.15245 -14.06804 -13.01898 -12.76425 -12.28089 -12.18595 -11.93544 -11.84986 -11.48163 -11.35704 -11.28683 -10.76384 -10.68796 -10.29591 -9.46804 -9.13538 -8.56465 -8.47279 -6.94880 -6.74126 -6.20532 -4.45560 2.20447 2.90597 3.04941 3.07804 3.07969 3.83525 4.09308 4.56098 4.73614 4.80738 5.20226 5.50941 5.98217 6.07734 6.23263 6.29905 6.44833 6.61579 6.72250 6.80385 6.97949 7.06914 7.27298 7.30310 7.66268 7.71141 8.06759 8.20454 8.41689 8.49551 8.71484 9.35230 9.52968 10.27700 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.028005 B = 0.012462 C = 0.008970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.574937 B = 2246.335147 C = 3120.843737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.212 3.788 3 N -0.542 5.542 4 C 0.073 3.927 5 C -0.178 4.178 6 C 0.186 3.814 7 N -0.891 5.891 8 C -0.210 4.210 9 C -0.005 4.005 10 C 0.010 3.990 11 N -0.287 5.287 12 C -0.359 4.359 13 H 0.107 0.893 14 C 0.055 3.945 15 N -0.822 5.822 16 Si 0.924 3.076 17 H -0.270 1.270 18 H -0.263 1.263 19 H -0.278 1.278 20 H 0.065 0.935 21 H 0.073 0.927 22 H 0.074 0.926 23 H 0.105 0.895 24 H 0.388 0.612 25 H 0.388 0.612 26 H 0.107 0.893 27 H 0.114 0.886 28 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.491 0.897 2.311 3.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.050 4.050 3 N -0.267 5.267 4 C -0.052 4.052 5 C -0.204 4.204 6 C 0.084 3.916 7 N -0.433 5.433 8 C -0.234 4.234 9 C -0.026 4.026 10 C -0.104 4.104 11 N 0.042 4.958 12 C -0.487 4.487 13 H 0.124 0.876 14 C -0.157 4.157 15 N -0.452 5.452 16 Si 0.748 3.252 17 H -0.195 1.195 18 H -0.188 1.188 19 H -0.204 1.204 20 H 0.084 0.916 21 H 0.092 0.908 22 H 0.093 0.907 23 H 0.123 0.877 24 H 0.215 0.785 25 H 0.215 0.785 26 H 0.125 0.875 27 H 0.132 0.868 28 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.099 1.365 2.097 3.266 hybrid contribution 0.680 -1.605 -0.062 1.744 sum 2.778 -0.240 2.035 3.452 Atomic orbital electron populations 1.19976 0.86581 1.02909 1.01900 1.23284 0.94999 0.82164 1.04539 1.70175 1.00629 1.27866 1.28067 1.18548 0.91450 0.90558 1.04675 1.19027 0.88456 0.97422 1.15504 1.17166 0.85729 0.90615 0.98136 1.42182 1.04890 1.07792 1.88444 1.20095 0.97071 0.91658 1.14549 1.19767 0.88946 0.98796 0.95068 1.18597 0.86292 0.93631 1.11832 1.41105 1.02957 1.05491 1.46273 1.19608 1.15468 0.81525 1.32093 0.87566 1.25555 0.96123 1.01357 0.92679 1.70089 1.22654 1.36448 1.15962 0.85981 0.79713 0.80986 0.78496 1.19513 1.18755 1.20359 0.91649 0.90803 0.90743 0.87675 0.78506 0.78526 0.87512 0.86795 0.91052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.06 10.21 36.01 0.37 -0.70 15 2 C 0.21 5.33 7.83 -154.37 -1.21 4.12 15 3 N -0.54 -14.26 11.27 -8.11 -0.09 -14.35 15 4 C 0.07 1.92 7.22 -84.67 -0.61 1.31 15 5 C -0.18 -4.06 9.94 -39.01 -0.39 -4.44 15 6 C 0.19 3.79 6.75 -83.76 -0.56 3.23 15 7 N -0.89 -13.49 9.09 32.42 0.29 -13.19 15 8 C -0.21 -4.48 9.87 -39.32 -0.39 -4.87 15 9 C -0.01 -0.13 8.62 -39.54 -0.34 -0.47 15 10 C 0.01 0.28 6.14 -83.79 -0.51 -0.24 15 11 N -0.29 -7.71 2.84 -56.62 -0.16 -7.87 15 12 C -0.36 -9.26 9.21 -14.87 -0.14 -9.40 15 13 H 0.11 2.56 7.90 -52.49 -0.41 2.14 15 14 C 0.06 1.38 4.52 -17.49 -0.08 1.30 15 15 N -0.82 -21.64 10.90 55.49 0.60 -21.04 15 16 Si 0.92 18.69 29.60 -169.99 -5.03 13.65 15 17 H -0.27 -5.42 7.11 56.52 0.40 -5.02 15 18 H -0.26 -5.16 7.11 56.52 0.40 -4.76 15 19 H -0.28 -5.59 7.11 56.52 0.40 -5.19 15 20 H 0.06 1.11 8.14 -51.93 -0.42 0.69 15 21 H 0.07 1.29 8.14 -51.93 -0.42 0.87 15 22 H 0.07 1.39 7.66 -51.93 -0.40 0.99 15 23 H 0.11 2.19 8.06 -52.48 -0.42 1.77 15 24 H 0.39 5.07 8.83 -40.82 -0.36 4.71 15 25 H 0.39 4.92 8.84 -40.82 -0.36 4.56 15 26 H 0.11 1.94 8.06 -52.49 -0.42 1.52 15 27 H 0.11 2.84 6.46 -52.48 -0.34 2.50 15 28 H 0.28 6.80 8.31 -40.82 -0.34 6.46 15 LS Contribution 245.74 15.07 3.70 3.70 Total: -1.00 -30.78 245.74 -7.24 -38.03 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -2.70 Total: 11.23 kcal Atomic # 6 Polarization: -6.30 SS G_CDS: -3.86 Total: -10.16 kcal Atomic # 7 Polarization: -57.10 SS G_CDS: 0.65 Total: -56.46 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -5.03 Total: 13.65 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -30.78 -7.24 -38.03 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075972659.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.933 kcal (2) G-P(sol) polarization free energy of solvation -30.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds