Wall clock time and date at job start Mon Mar 30 2020 02:43:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30107 * 124.97623 * 2 1 4 4 C 1.35925 * 109.74293 * 180.24819 * 3 2 1 5 5 C 1.39635 * 133.42353 * 179.76787 * 4 3 2 6 6 C 1.38388 * 119.71277 * 179.97438 * 5 4 3 7 7 N 1.39803 * 119.82300 * 180.02562 * 6 5 4 8 8 C 1.39337 * 120.35143 * 359.97438 * 6 5 4 9 9 C 1.37839 * 120.36739 * 0.02562 * 8 6 5 10 10 C 1.38756 * 119.93707 * 359.97438 * 9 8 6 11 11 N 1.36527 * 124.97720 * 179.81063 * 2 1 3 12 12 C 1.37273 * 126.39935 * 0.02562 * 11 2 1 13 13 H 1.08000 * 120.00037 * 323.47715 * 12 11 2 14 14 C 1.38893 * 119.99949 * 143.48523 * 12 11 2 15 15 N 1.31403 * 119.99887 * 340.40457 * 14 12 11 16 16 Si 1.86798 * 120.00250 * 160.40941 * 14 12 11 17 17 H 1.48502 * 109.46858 * 269.99687 * 16 14 12 18 18 H 1.48501 * 109.47161 * 29.99214 * 16 14 12 19 19 H 1.48496 * 109.47338 * 149.99987 * 16 14 12 20 20 H 1.08997 * 109.47084 * 275.33796 * 1 2 3 21 21 H 1.09000 * 109.46786 * 35.33679 * 1 2 3 22 22 H 1.09001 * 109.46990 * 155.33813 * 1 2 3 23 23 H 1.08004 * 120.14434 * 359.95299 * 5 4 3 24 24 H 0.97001 * 120.00148 * 359.97438 * 7 6 5 25 25 H 0.96999 * 119.99962 * 180.02562 * 7 6 5 26 26 H 1.07999 * 119.81381 * 179.97438 * 8 6 5 27 27 H 1.08005 * 120.03296 * 179.97438 * 9 8 6 28 28 H 0.96995 * 120.00245 * 175.57575 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2528 1.0661 0.0000 4 6 3.5643 0.7089 -0.0055 5 6 4.7569 1.4353 -0.0121 6 6 5.9679 0.7656 -0.0162 7 7 7.1633 1.4905 -0.0222 8 6 6.0021 -0.6274 -0.0133 9 6 4.8303 -1.3532 -0.0068 10 6 3.6085 -0.6957 -0.0026 11 7 2.2896 -1.1187 0.0037 12 6 1.8513 -2.4195 0.0075 13 1 0.9663 -2.6895 0.5646 14 6 2.5459 -3.3885 -0.7050 15 7 3.3642 -3.0340 -1.6701 16 14 2.3167 -5.1957 -0.2916 17 1 3.3080 -5.5973 0.7385 18 1 0.9439 -5.4137 0.2311 19 1 2.5160 -6.0127 -1.5155 20 1 -0.3633 0.0956 1.0232 21 1 -0.3633 0.8383 -0.5944 22 1 -0.3633 -0.9339 -0.4288 23 1 4.7343 2.5151 -0.0143 24 1 7.1424 2.4603 -0.0238 25 1 8.0135 1.0237 -0.0254 26 1 6.9521 -1.1412 -0.0169 27 1 4.8632 -2.4328 -0.0050 28 1 3.8975 -3.7046 -2.1247 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075972659.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:56 Heat of formation + Delta-G solvation = 42.763349 kcal Electronic energy + Delta-G solvation = -14232.307508 eV Core-core repulsion = 11861.442803 eV Total energy + Delta-G solvation = -2370.864705 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.43305 -38.60444 -35.92174 -34.35956 -33.00919 -31.43192 -29.95708 -27.63827 -26.69171 -22.93206 -22.64773 -21.09602 -19.48644 -18.21394 -17.45982 -17.09741 -16.40311 -15.93865 -15.73294 -14.77840 -14.54530 -13.94367 -13.80153 -13.68668 -13.55735 -13.10139 -13.04631 -12.91560 -12.49604 -12.29927 -11.99183 -11.30696 -10.91147 -10.47722 -10.23465 -8.79349 -8.57228 -7.90401 -6.39193 0.38992 1.17400 1.39358 1.44616 1.53228 2.13518 2.25575 2.87927 2.95783 3.20202 3.36064 3.81077 4.21893 4.42507 4.63413 4.80321 4.83237 4.92339 4.99150 5.07380 5.18353 5.28544 5.47205 5.57893 5.84523 6.00564 6.27535 6.33292 6.82160 6.85780 7.28243 7.47233 7.64331 8.44026 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.028005 B = 0.012462 C = 0.008970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.574937 B = 2246.335147 C = 3120.843737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 C 0.191 3.809 3 N -0.565 5.565 4 C 0.043 3.957 5 C -0.198 4.198 6 C 0.205 3.795 7 N -0.867 5.867 8 C -0.202 4.202 9 C -0.027 4.027 10 C -0.027 4.027 11 N -0.306 5.306 12 C -0.385 4.385 13 H 0.115 0.885 14 C 0.016 3.984 15 N -0.859 5.859 16 Si 0.999 3.001 17 H -0.267 1.267 18 H -0.251 1.251 19 H -0.275 1.275 20 H 0.088 0.912 21 H 0.090 0.910 22 H 0.077 0.923 23 H 0.120 0.880 24 H 0.403 0.597 25 H 0.405 0.595 26 H 0.142 0.858 27 H 0.103 0.897 28 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.429 0.548 2.682 4.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.070 4.070 3 N -0.291 5.291 4 C -0.081 4.081 5 C -0.225 4.225 6 C 0.099 3.901 7 N -0.410 5.410 8 C -0.225 4.225 9 C -0.048 4.048 10 C -0.140 4.140 11 N 0.022 4.978 12 C -0.513 4.513 13 H 0.133 0.867 14 C -0.193 4.193 15 N -0.490 5.490 16 Si 0.819 3.181 17 H -0.192 1.192 18 H -0.174 1.174 19 H -0.200 1.200 20 H 0.107 0.893 21 H 0.108 0.892 22 H 0.096 0.904 23 H 0.138 0.862 24 H 0.232 0.768 25 H 0.235 0.765 26 H 0.160 0.840 27 H 0.121 0.879 28 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.077 1.054 2.473 4.086 hybrid contribution 0.511 -1.389 -0.186 1.491 sum 3.588 -0.335 2.287 4.268 Atomic orbital electron populations 1.20119 0.83184 1.03743 1.03732 1.24312 0.97135 0.81795 1.03771 1.70153 1.01056 1.28572 1.29281 1.19110 0.92434 0.91030 1.05571 1.19284 0.88363 0.98270 1.16594 1.17177 0.86732 0.90548 0.95645 1.42066 1.03860 1.08570 1.86552 1.20464 0.97398 0.92254 1.12402 1.19875 0.89592 0.98544 0.96780 1.19076 0.87106 0.94394 1.13442 1.41386 1.03346 1.06123 1.46976 1.20042 1.16483 0.81849 1.32915 0.86702 1.26525 0.95277 1.05591 0.91879 1.70184 1.23702 1.38040 1.17029 0.84873 0.80144 0.74931 0.78158 1.19219 1.17428 1.20041 0.89328 0.89158 0.90433 0.86156 0.76815 0.76515 0.84043 0.87922 0.90799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.90 10.21 71.24 0.73 -1.17 15 2 C 0.19 9.82 7.83 137.76 1.08 10.90 15 3 N -0.56 -30.31 11.27 -179.57 -2.02 -32.33 15 4 C 0.04 2.31 7.22 39.41 0.28 2.59 15 5 C -0.20 -8.92 9.94 22.64 0.22 -8.70 15 6 C 0.20 7.91 6.75 38.17 0.26 8.17 15 7 N -0.87 -23.13 9.09 -51.35 -0.47 -23.59 15 8 C -0.20 -8.30 9.87 22.44 0.22 -8.07 15 9 C -0.03 -1.35 8.62 22.30 0.19 -1.16 15 10 C -0.03 -1.49 6.14 38.77 0.24 -1.26 15 11 N -0.31 -16.87 2.84 -333.04 -0.95 -17.81 15 12 C -0.39 -20.21 9.21 84.00 0.77 -19.44 15 13 H 0.12 5.57 7.90 -2.91 -0.02 5.55 15 14 C 0.02 0.81 4.52 84.91 0.38 1.20 15 15 N -0.86 -46.01 10.90 21.65 0.24 -45.78 15 16 Si 1.00 38.16 29.60 68.60 2.03 40.19 15 17 H -0.27 -10.01 7.11 99.48 0.71 -9.30 15 18 H -0.25 -8.99 7.11 99.48 0.71 -8.28 15 19 H -0.28 -10.28 7.11 99.48 0.71 -9.58 15 20 H 0.09 2.93 8.14 -2.39 -0.02 2.91 15 21 H 0.09 3.10 8.14 -2.39 -0.02 3.08 15 22 H 0.08 2.88 7.66 -2.39 -0.02 2.86 15 23 H 0.12 4.89 8.06 -2.91 -0.02 4.86 15 24 H 0.40 9.02 8.83 -92.71 -0.82 8.20 15 25 H 0.41 8.53 8.84 -92.71 -0.82 7.71 15 26 H 0.14 4.71 8.06 -2.91 -0.02 4.68 15 27 H 0.10 5.23 6.46 -2.91 -0.02 5.21 15 28 H 0.28 13.94 8.31 -92.71 -0.77 13.17 15 Total: -1.00 -67.97 245.74 2.78 -65.19 By element: Atomic # 1 Polarization: 31.50 SS G_CDS: -0.43 Total: 31.07 kcal Atomic # 6 Polarization: -21.31 SS G_CDS: 4.38 Total: -16.93 kcal Atomic # 7 Polarization: -116.32 SS G_CDS: -3.20 Total: -119.52 kcal Atomic # 14 Polarization: 38.16 SS G_CDS: 2.03 Total: 40.19 kcal Total: -67.97 2.78 -65.19 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075972659.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.955 kcal (2) G-P(sol) polarization free energy of solvation -67.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds