Wall clock time and date at job start Mon Mar 30 2020 03:14:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.37829 * 126.53649 * 2 1 4 4 C 1.40141 * 125.29235 * 0.02562 * 3 2 1 5 5 H 1.08002 * 120.00567 * 0.02562 * 4 3 2 6 6 C 1.40342 * 119.99562 * 179.72381 * 4 3 2 7 7 N 1.30594 * 120.00142 * 0.27927 * 6 4 3 8 8 Si 1.86803 * 119.99874 * 180.27755 * 6 4 3 9 9 H 1.48496 * 109.47491 * 60.00000 * 8 6 4 10 10 H 1.48504 * 109.47032 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.46993 * 300.00106 * 8 6 4 12 12 N 1.32501 * 109.40651 * 180.27840 * 3 2 1 13 13 C 1.33981 * 109.79091 * 359.56525 * 12 3 2 14 14 C 1.40455 * 133.09383 * 180.12154 * 13 12 3 15 15 C 1.37914 * 119.69014 * 180.32960 * 14 13 12 16 16 N 1.39801 * 119.76569 * 179.97438 * 15 14 13 17 17 C 1.39757 * 120.46739 * 359.97438 * 15 14 13 18 18 C 1.37816 * 120.50134 * 0.02562 * 17 15 14 19 19 C 1.38094 * 126.53766 * 180.02562 * 2 1 3 20 20 H 1.08996 * 109.46881 * 89.97700 * 1 2 3 21 21 H 1.09002 * 109.47178 * 209.97916 * 1 2 3 22 22 H 1.09002 * 109.47485 * 329.97719 * 1 2 3 23 23 H 0.97000 * 119.99474 * 179.97438 * 7 6 4 24 24 H 1.07999 * 120.14940 * 0.31179 * 14 13 12 25 25 H 0.96994 * 119.99766 * 0.02562 * 16 15 14 26 26 H 0.96996 * 119.99757 * 180.02562 * 16 15 14 27 27 H 1.07998 * 119.74981 * 180.02562 * 17 15 14 28 28 H 1.08000 * 120.01112 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2855 1.1074 0.0000 4 6 1.8485 2.4389 0.0005 5 1 0.7914 2.6604 0.0014 6 6 2.7845 3.4846 0.0063 7 7 4.0627 3.2169 0.0057 8 14 2.2020 5.2595 0.0148 9 1 1.3818 5.5055 1.2280 10 1 3.3780 6.1664 0.0195 11 1 1.3833 5.5176 -1.1969 12 7 3.5518 0.7172 -0.0061 13 6 3.6140 -0.6212 -0.0006 14 6 4.6831 -1.5321 -0.0010 15 6 4.4261 -2.8871 -0.0011 16 7 5.4890 -3.7951 -0.0021 17 6 3.1105 -3.3588 -0.0003 18 6 2.0513 -2.4771 0.0002 19 6 2.2871 -1.1095 -0.0005 20 1 -0.3633 0.0004 -1.0276 21 1 -0.3634 -0.8902 0.5135 22 1 -0.3634 0.8898 0.5142 23 1 4.7096 3.9397 0.0094 24 1 5.7017 -1.1730 -0.0016 25 1 6.4033 -3.4714 -0.0023 26 1 5.3121 -4.7488 -0.0025 27 1 2.9225 -4.4223 0.0001 28 1 1.0378 -2.8503 0.0004 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075973544.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:17 Heat of formation + Delta-G solvation = 64.751732 kcal Electronic energy + Delta-G solvation = -13951.463653 eV Core-core repulsion = 11581.552436 eV Total energy + Delta-G solvation = -2369.911217 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.17499 -36.76652 -33.73464 -32.69877 -32.24294 -28.64205 -28.00012 -25.82858 -25.02890 -21.36196 -20.45581 -19.49925 -16.98696 -16.44358 -15.90722 -15.44883 -15.03605 -14.29760 -13.91535 -12.98995 -12.87513 -12.45486 -12.31782 -12.01256 -11.64690 -11.47449 -11.21628 -11.07043 -10.73768 -10.33193 -10.23589 -9.60742 -8.96842 -8.54834 -7.81820 -6.90175 -6.63500 -6.27591 -4.57487 2.31960 2.92084 3.04154 3.05507 3.06093 3.83459 4.21194 4.24030 4.64467 5.04167 5.59369 5.66872 5.71092 6.02305 6.06599 6.14699 6.37818 6.45161 6.68166 6.93541 7.01769 7.15556 7.30709 7.55730 7.69435 7.88061 8.05012 8.22240 8.50061 8.53518 8.70378 9.12084 10.03547 10.25793 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.044946 B = 0.008711 C = 0.007325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.823967 B = 3213.693979 C = 3821.365588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.548 5.548 3 C 0.423 3.577 4 C -0.441 4.441 5 H 0.087 0.913 6 C 0.077 3.923 7 N -0.715 5.715 8 Si 0.919 3.081 9 H -0.264 1.264 10 H -0.275 1.275 11 H -0.264 1.264 12 N -0.541 5.541 13 C 0.150 3.850 14 C -0.210 4.210 15 C 0.204 3.796 16 N -0.892 5.892 17 C -0.242 4.242 18 C -0.066 4.066 19 C -0.043 4.043 20 H 0.047 0.953 21 H 0.058 0.942 22 H 0.073 0.927 23 H 0.279 0.721 24 H 0.106 0.894 25 H 0.389 0.611 26 H 0.387 0.613 27 H 0.102 0.898 28 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.829 -4.813 0.110 5.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.246 5.246 3 C 0.187 3.813 4 C -0.478 4.478 5 H 0.105 0.895 6 C -0.150 4.150 7 N -0.337 5.337 8 Si 0.742 3.258 9 H -0.189 1.189 10 H -0.200 1.200 11 H -0.189 1.189 12 N -0.265 5.265 13 C 0.021 3.979 14 C -0.237 4.237 15 C 0.101 3.899 16 N -0.433 5.433 17 C -0.266 4.266 18 C -0.088 4.088 19 C -0.149 4.149 20 H 0.066 0.934 21 H 0.077 0.923 22 H 0.091 0.909 23 H 0.091 0.909 24 H 0.124 0.876 25 H 0.216 0.784 26 H 0.213 0.787 27 H 0.120 0.880 28 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -2.143 -4.112 0.104 4.638 hybrid contribution -0.779 -0.071 -0.002 0.783 sum -2.922 -4.183 0.102 5.104 Atomic orbital electron populations 1.21376 0.79514 1.02048 1.00839 1.45305 1.04809 1.05469 1.69007 1.20437 0.83452 0.87448 0.89988 1.18470 0.94655 0.86886 1.47829 0.89536 1.25875 0.94391 1.01300 0.93475 1.69982 1.01504 1.34352 1.27884 0.86212 0.79187 0.80532 0.79847 1.18875 1.20014 1.18867 1.71407 1.15912 1.06064 1.33127 1.19222 0.90404 0.92298 0.95998 1.19194 0.96835 0.89437 1.18261 1.17171 0.87342 0.88860 0.96501 1.42232 1.06116 1.06710 1.88288 1.19742 0.90552 0.97296 1.19058 1.19317 0.97210 0.89437 1.02829 1.18791 0.92546 0.88619 1.14971 0.93443 0.92336 0.90876 0.90941 0.87595 0.78442 0.78694 0.87978 0.88588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.98 10.93 59.85 0.65 2.63 15 2 N -0.55 -13.46 3.26 -120.79 -0.39 -13.86 15 3 C 0.42 11.78 7.41 -155.69 -1.15 10.63 15 4 C -0.44 -11.52 8.99 -38.08 -0.34 -11.86 15 5 H 0.09 2.03 7.09 -52.49 -0.37 1.66 15 6 C 0.08 1.94 5.50 -17.29 -0.10 1.84 15 7 N -0.72 -19.32 11.85 55.57 0.66 -18.66 15 8 Si 0.92 18.09 29.56 -169.99 -5.03 13.07 15 9 H -0.26 -5.08 7.11 56.52 0.40 -4.68 15 10 H -0.28 -5.31 7.11 56.52 0.40 -4.91 15 11 H -0.26 -5.09 7.11 56.52 0.40 -4.69 15 12 N -0.54 -16.04 9.33 -10.32 -0.10 -16.13 15 13 C 0.15 4.08 7.20 -84.90 -0.61 3.47 15 14 C -0.21 -5.01 9.94 -38.87 -0.39 -5.40 15 15 C 0.20 4.14 6.74 -83.77 -0.56 3.58 15 16 N -0.89 -13.69 9.09 32.41 0.29 -13.39 15 17 C -0.24 -4.80 9.88 -39.17 -0.39 -5.19 15 18 C -0.07 -1.40 10.02 -39.54 -0.40 -1.80 15 19 C -0.04 -1.07 6.88 -83.65 -0.58 -1.65 15 20 H 0.05 0.81 8.14 -51.93 -0.42 0.39 15 21 H 0.06 0.95 8.14 -51.93 -0.42 0.52 15 22 H 0.07 1.27 7.32 -51.93 -0.38 0.89 15 23 H 0.28 6.79 8.29 -40.82 -0.34 6.46 15 24 H 0.11 2.44 8.06 -52.49 -0.42 2.02 15 25 H 0.39 5.33 8.83 -40.82 -0.36 4.97 15 26 H 0.39 4.86 8.84 -40.82 -0.36 4.50 15 27 H 0.10 1.71 8.06 -52.49 -0.42 1.28 15 28 H 0.10 1.77 8.06 -52.49 -0.42 1.35 15 LS Contribution 248.74 15.07 3.75 3.75 Total: -1.00 -31.83 248.74 -7.39 -39.22 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -2.72 Total: 9.76 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: -3.86 Total: -3.75 kcal Atomic # 7 Polarization: -62.51 SS G_CDS: 0.46 Total: -62.04 kcal Atomic # 14 Polarization: 18.09 SS G_CDS: -5.03 Total: 13.07 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -31.83 -7.39 -39.22 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075973544.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.973 kcal (2) G-P(sol) polarization free energy of solvation -31.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds