Wall clock time and date at job start Mon Mar 30 2020 03:14:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.37829 * 126.53649 * 2 1 4 4 C 1.40141 * 125.29235 * 0.02562 * 3 2 1 5 5 H 1.08002 * 120.00567 * 0.02562 * 4 3 2 6 6 C 1.40342 * 119.99562 * 179.72381 * 4 3 2 7 7 N 1.30594 * 120.00142 * 0.27927 * 6 4 3 8 8 Si 1.86803 * 119.99874 * 180.27755 * 6 4 3 9 9 H 1.48496 * 109.47491 * 60.00000 * 8 6 4 10 10 H 1.48504 * 109.47032 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.46993 * 300.00106 * 8 6 4 12 12 N 1.32501 * 109.40651 * 180.27840 * 3 2 1 13 13 C 1.33981 * 109.79091 * 359.56525 * 12 3 2 14 14 C 1.40455 * 133.09383 * 180.12154 * 13 12 3 15 15 C 1.37914 * 119.69014 * 180.32960 * 14 13 12 16 16 N 1.39801 * 119.76569 * 179.97438 * 15 14 13 17 17 C 1.39757 * 120.46739 * 359.97438 * 15 14 13 18 18 C 1.37816 * 120.50134 * 0.02562 * 17 15 14 19 19 C 1.38094 * 126.53766 * 180.02562 * 2 1 3 20 20 H 1.08996 * 109.46881 * 89.97700 * 1 2 3 21 21 H 1.09002 * 109.47178 * 209.97916 * 1 2 3 22 22 H 1.09002 * 109.47485 * 329.97719 * 1 2 3 23 23 H 0.97000 * 119.99474 * 179.97438 * 7 6 4 24 24 H 1.07999 * 120.14940 * 0.31179 * 14 13 12 25 25 H 0.96994 * 119.99766 * 0.02562 * 16 15 14 26 26 H 0.96996 * 119.99757 * 180.02562 * 16 15 14 27 27 H 1.07998 * 119.74981 * 180.02562 * 17 15 14 28 28 H 1.08000 * 120.01112 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2855 1.1074 0.0000 4 6 1.8485 2.4389 0.0005 5 1 0.7914 2.6604 0.0014 6 6 2.7845 3.4846 0.0063 7 7 4.0627 3.2169 0.0057 8 14 2.2020 5.2595 0.0148 9 1 1.3818 5.5055 1.2280 10 1 3.3780 6.1664 0.0195 11 1 1.3833 5.5176 -1.1969 12 7 3.5518 0.7172 -0.0061 13 6 3.6140 -0.6212 -0.0006 14 6 4.6831 -1.5321 -0.0010 15 6 4.4261 -2.8871 -0.0011 16 7 5.4890 -3.7951 -0.0021 17 6 3.1105 -3.3588 -0.0003 18 6 2.0513 -2.4771 0.0002 19 6 2.2871 -1.1095 -0.0005 20 1 -0.3633 0.0004 -1.0276 21 1 -0.3634 -0.8902 0.5135 22 1 -0.3634 0.8898 0.5142 23 1 4.7096 3.9397 0.0094 24 1 5.7017 -1.1730 -0.0016 25 1 6.4033 -3.4714 -0.0023 26 1 5.3121 -4.7488 -0.0025 27 1 2.9225 -4.4223 0.0001 28 1 1.0378 -2.8503 0.0004 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075973544.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:17 Heat of formation + Delta-G solvation = 42.744590 kcal Electronic energy + Delta-G solvation = -13952.417954 eV Core-core repulsion = 11581.552436 eV Total energy + Delta-G solvation = -2370.865518 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.98516 -38.42637 -35.54956 -34.40022 -33.91077 -30.43141 -29.72302 -27.56697 -26.70041 -23.14196 -22.19515 -21.30595 -18.81045 -18.12678 -17.54113 -17.00013 -16.71779 -16.02676 -15.51399 -14.72119 -14.60263 -14.13675 -13.91354 -13.52093 -13.33832 -13.11359 -12.86691 -12.63460 -12.49305 -11.98884 -11.92834 -11.31605 -10.77031 -10.21603 -9.75558 -8.74174 -8.47214 -7.93921 -6.50402 0.54895 1.19877 1.42735 1.50542 1.57862 2.19474 2.39809 2.56014 3.23964 3.26070 3.67908 4.03249 4.23583 4.47008 4.58951 4.67560 4.72120 4.77652 4.97100 5.16772 5.27045 5.46253 5.59603 5.77193 5.99499 6.15028 6.20277 6.50036 6.77396 6.94173 7.27155 7.31777 8.13675 8.45512 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.044946 B = 0.008711 C = 0.007325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.823967 B = 3213.693979 C = 3821.365588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.551 5.551 3 C 0.390 3.610 4 C -0.470 4.470 5 H 0.105 0.895 6 C 0.029 3.971 7 N -0.770 5.770 8 Si 1.004 2.996 9 H -0.253 1.253 10 H -0.272 1.272 11 H -0.254 1.254 12 N -0.592 5.592 13 C 0.096 3.904 14 C -0.238 4.238 15 C 0.216 3.784 16 N -0.871 5.871 17 C -0.228 4.228 18 C -0.061 4.061 19 C -0.069 4.069 20 H 0.062 0.938 21 H 0.085 0.915 22 H 0.080 0.920 23 H 0.283 0.717 24 H 0.096 0.904 25 H 0.398 0.602 26 H 0.406 0.594 27 H 0.147 0.853 28 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.338 -6.421 0.135 7.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.249 5.249 3 C 0.152 3.848 4 C -0.507 4.507 5 H 0.123 0.877 6 C -0.193 4.193 7 N -0.393 5.393 8 Si 0.823 3.177 9 H -0.177 1.177 10 H -0.196 1.196 11 H -0.178 1.178 12 N -0.317 5.317 13 C -0.031 4.031 14 C -0.266 4.266 15 C 0.110 3.890 16 N -0.414 5.414 17 C -0.252 4.252 18 C -0.083 4.083 19 C -0.176 4.176 20 H 0.080 0.920 21 H 0.104 0.896 22 H 0.099 0.901 23 H 0.093 0.907 24 H 0.114 0.886 25 H 0.227 0.773 26 H 0.236 0.764 27 H 0.165 0.835 28 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -3.652 -5.818 0.129 6.870 hybrid contribution -0.247 0.118 -0.012 0.274 sum -3.899 -5.700 0.117 6.907 Atomic orbital electron populations 1.21688 0.76456 1.03805 1.02304 1.45514 1.06658 1.04525 1.68195 1.20844 0.83963 0.88911 0.91130 1.18968 0.95869 0.87008 1.48894 0.87724 1.27039 0.94079 1.06250 0.91973 1.70139 1.03239 1.36108 1.29861 0.84947 0.78700 0.73673 0.80397 1.17702 1.19632 1.17754 1.71251 1.17858 1.07964 1.34673 1.19753 0.92791 0.92201 0.98356 1.19346 0.95927 0.90989 1.20295 1.17259 0.89129 0.88136 0.94435 1.42138 1.05579 1.07107 1.86552 1.20303 0.89627 0.99347 1.15884 1.19787 0.99544 0.87910 1.01064 1.19182 0.91796 0.90143 1.16459 0.91988 0.89597 0.90125 0.90657 0.88599 0.77337 0.76411 0.83492 0.85060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.57 10.93 127.77 1.40 4.96 15 2 N -0.55 -27.38 3.26 -536.07 -1.75 -29.13 15 3 C 0.39 22.64 7.41 133.68 0.99 23.63 15 4 C -0.47 -25.31 8.99 23.24 0.21 -25.11 15 5 H 0.10 4.96 7.09 -2.91 -0.02 4.94 15 6 C 0.03 1.49 5.50 85.39 0.47 1.96 15 7 N -0.77 -43.83 11.85 21.89 0.26 -43.57 15 8 Si 1.00 37.61 29.56 68.60 2.03 39.64 15 9 H -0.25 -8.93 7.11 99.48 0.71 -8.22 15 10 H -0.27 -9.86 7.11 99.48 0.71 -9.15 15 11 H -0.25 -8.97 7.11 99.48 0.71 -8.26 15 12 N -0.59 -37.12 9.33 -186.57 -1.74 -38.86 15 13 C 0.10 5.44 7.20 40.13 0.29 5.72 15 14 C -0.24 -11.61 9.94 22.73 0.23 -11.38 15 15 C 0.22 8.32 6.74 38.16 0.26 8.58 15 16 N -0.87 -23.99 9.09 -51.37 -0.47 -24.46 15 17 C -0.23 -8.15 9.88 22.54 0.22 -7.93 15 18 C -0.06 -2.44 10.02 22.30 0.22 -2.22 15 19 C -0.07 -3.46 6.88 39.06 0.27 -3.19 15 20 H 0.06 2.02 8.14 -2.39 -0.02 2.00 15 21 H 0.09 2.55 8.14 -2.39 -0.02 2.53 15 22 H 0.08 2.72 7.32 -2.39 -0.02 2.70 15 23 H 0.28 14.53 8.29 -92.71 -0.77 13.76 15 24 H 0.10 4.66 8.06 -2.91 -0.02 4.63 15 25 H 0.40 9.98 8.83 -92.71 -0.82 9.17 15 26 H 0.41 8.38 8.84 -92.71 -0.82 7.56 15 27 H 0.15 3.97 8.06 -2.91 -0.02 3.95 15 28 H 0.13 4.24 8.06 -2.91 -0.02 4.22 15 Total: -1.00 -73.94 248.74 2.45 -71.49 By element: Atomic # 1 Polarization: 30.26 SS G_CDS: -0.43 Total: 29.82 kcal Atomic # 6 Polarization: -9.50 SS G_CDS: 4.55 Total: -4.95 kcal Atomic # 7 Polarization: -132.31 SS G_CDS: -3.69 Total: -136.01 kcal Atomic # 14 Polarization: 37.61 SS G_CDS: 2.03 Total: 39.64 kcal Total: -73.94 2.45 -71.49 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075973544.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.233 kcal (2) G-P(sol) polarization free energy of solvation -73.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds