Wall clock time and date at job start Mon Mar 30 2020 03:31:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86806 * 119.99905 * 2 1 4 4 H 1.48503 * 109.46704 * 269.99223 * 3 2 1 5 5 H 1.48493 * 109.47058 * 29.99464 * 3 2 1 6 6 H 1.48494 * 109.47064 * 149.99575 * 3 2 1 7 7 C 1.37876 * 120.00397 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99660 * 0.02562 * 7 2 1 9 9 C 1.50690 * 120.00560 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47695 * 185.10257 * 9 7 2 11 11 H 1.08999 * 109.29772 * 305.11478 * 10 9 7 12 12 C 1.52859 * 109.29877 * 64.68968 * 10 9 7 13 13 C 1.53436 * 108.83731 * 171.42400 * 12 10 9 14 14 N 1.46926 * 107.78643 * 296.76956 * 13 12 10 15 15 C 1.39918 * 118.91958 * 44.63952 * 14 13 12 16 16 C 1.39080 * 119.13875 * 166.68564 * 15 14 13 17 17 C 1.38019 * 120.03754 * 179.84010 * 16 15 14 18 18 C 1.38308 * 119.91009 * 0.02562 * 17 16 15 19 19 C 1.38117 * 120.16104 * 0.02591 * 18 17 16 20 20 C 1.38508 * 120.30693 * 0.02864 * 19 18 17 21 21 H 0.97003 * 119.99965 * 0.02562 * 1 2 3 22 22 H 1.09002 * 109.47476 * 65.09890 * 9 7 2 23 23 H 1.09006 * 109.47205 * 305.10644 * 9 7 2 24 24 H 1.08994 * 109.57740 * 291.23196 * 12 10 9 25 25 H 1.09003 * 109.57146 * 51.49234 * 12 10 9 26 26 H 1.08996 * 109.79850 * 56.33582 * 13 12 10 27 27 H 1.09000 * 109.79573 * 177.19748 * 13 12 10 28 28 H 0.97002 * 120.53990 * 224.62547 * 14 13 12 29 29 H 1.08004 * 119.97731 * 359.83810 * 16 15 14 30 30 H 1.07998 * 120.04394 * 180.02562 * 17 16 15 31 31 H 1.08004 * 119.92142 * 180.02562 * 18 17 16 32 32 H 1.07997 * 119.85073 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0216 -2.6308 -0.1267 11 1 3.5835 -3.2402 0.6637 12 6 3.6091 -3.1943 -1.4864 13 6 4.3030 -4.5471 -1.6932 14 7 5.7523 -4.3079 -1.7245 15 6 6.3184 -3.4569 -0.7690 16 6 7.7001 -3.4405 -0.6106 17 6 8.2784 -2.6057 0.3241 18 6 7.4821 -1.7861 1.1032 19 6 6.1097 -1.8014 0.9485 20 6 5.5210 -2.6368 0.0137 21 1 -0.4850 0.8401 -0.0004 22 1 3.8745 -0.7611 0.9333 23 1 3.8752 -0.6032 -0.8396 24 1 2.5280 -3.3306 -1.5125 25 1 3.9093 -2.5035 -2.2743 26 1 4.0573 -5.2177 -0.8699 27 1 3.9809 -4.9867 -2.6372 28 1 6.3077 -4.7333 -2.3965 29 1 8.3207 -4.0813 -1.2193 30 1 9.3513 -2.5926 0.4469 31 1 7.9346 -1.1325 1.8344 32 1 5.4928 -1.1590 1.5593 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083965597.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:01 Heat of formation + Delta-G solvation = 14.489284 kcal Electronic energy + Delta-G solvation = -14357.709553 eV Core-core repulsion = 12089.159136 eV Total energy + Delta-G solvation = -2268.550417 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.69905 -36.02534 -34.41193 -32.18672 -29.97586 -29.45484 -27.87339 -24.19559 -22.83939 -22.23073 -20.39151 -18.86168 -17.25973 -16.69022 -15.79149 -15.28146 -14.32803 -13.67374 -13.62142 -13.32970 -13.16015 -12.92128 -12.47952 -12.39166 -11.85764 -11.39191 -11.17709 -10.91121 -10.69928 -10.27197 -10.09290 -9.72424 -9.71874 -9.34439 -9.06277 -8.51203 -8.21988 -6.99807 -6.03118 -4.00171 1.85034 2.01712 3.32602 3.40225 3.45127 3.80145 4.28663 4.47203 5.20118 5.26795 5.33559 5.40645 5.54308 5.60253 5.76922 5.84543 5.92708 5.99778 6.18124 6.29874 6.49503 6.69239 6.70216 6.80953 6.93164 6.96400 7.13732 7.21658 7.36636 7.44497 7.71581 7.81342 8.08713 8.54849 9.01332 9.60196 11.10094 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.032667 B = 0.009545 C = 0.007791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.917708 B = 2932.677577 C = 3593.249890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.067 3.933 3 Si 0.876 3.124 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.265 1.265 7 C -0.516 4.516 8 H 0.073 0.927 9 C -0.003 4.003 10 C -0.031 4.031 11 H 0.071 0.929 12 C -0.120 4.120 13 C 0.120 3.880 14 N -0.755 5.755 15 C 0.210 3.790 16 C -0.200 4.200 17 C -0.092 4.092 18 C -0.178 4.178 19 C -0.077 4.077 20 C -0.130 4.130 21 H 0.262 0.738 22 H 0.019 0.981 23 H 0.013 0.987 24 H 0.085 0.915 25 H 0.062 0.938 26 H 0.053 0.947 27 H 0.071 0.929 28 H 0.394 0.606 29 H 0.111 0.889 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.220 -6.867 -1.948 15.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.134 4.134 3 Si 0.704 3.296 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.190 1.190 7 C -0.554 4.554 8 H 0.091 0.909 9 C -0.040 4.040 10 C -0.049 4.049 11 H 0.089 0.911 12 C -0.158 4.158 13 C -0.004 4.004 14 N -0.386 5.386 15 C 0.108 3.892 16 C -0.222 4.222 17 C -0.111 4.111 18 C -0.198 4.198 19 C -0.096 4.096 20 C -0.134 4.134 21 H 0.072 0.928 22 H 0.037 0.963 23 H 0.031 0.969 24 H 0.104 0.896 25 H 0.081 0.919 26 H 0.072 0.928 27 H 0.090 0.910 28 H 0.228 0.772 29 H 0.129 0.871 30 H 0.130 0.870 31 H 0.130 0.870 32 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 12.845 -6.772 -1.927 14.648 hybrid contribution 0.599 0.824 -0.311 1.065 sum 13.444 -5.948 -2.238 14.870 Atomic orbital electron populations 1.69910 1.06261 1.26812 1.51345 1.25003 0.94680 0.99067 0.94653 0.86824 0.80444 0.83818 0.78521 1.20394 1.21475 1.18952 1.21142 0.89362 0.94377 1.50529 0.90867 1.19673 0.96923 0.91040 0.96375 1.19856 0.88404 0.99894 0.96772 0.91072 1.21829 1.01185 0.94924 0.97888 1.21649 0.79996 0.97977 1.00788 1.44668 1.07700 1.52139 1.34120 1.17634 0.91434 0.90192 0.89980 1.20547 0.92821 1.04977 1.03864 1.20718 0.98765 0.95957 0.95655 1.20833 0.93866 1.02583 1.02551 1.21129 0.94490 0.97089 0.96849 1.19777 0.96584 0.98066 0.99014 0.92805 0.96331 0.96884 0.89619 0.91898 0.92830 0.91044 0.77204 0.87067 0.86975 0.87015 0.85645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.70 13.96 55.43 0.77 -26.93 16 2 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 21.91 27.37 -169.99 -4.65 17.26 16 4 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.26 -6.39 6.69 56.52 0.38 -6.01 16 7 C -0.52 -14.39 8.97 -34.45 -0.31 -14.70 16 8 H 0.07 2.17 7.49 -52.48 -0.39 1.77 16 9 C 0.00 -0.07 3.13 -27.89 -0.09 -0.16 16 10 C -0.03 -0.63 2.28 -91.90 -0.21 -0.84 16 11 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 12 C -0.12 -2.20 5.05 -26.58 -0.13 -2.34 16 13 C 0.12 1.74 7.11 -3.58 -0.03 1.71 16 14 N -0.76 -10.76 5.80 -58.08 -0.34 -11.10 16 15 C 0.21 3.47 6.47 -83.72 -0.54 2.93 16 16 C -0.20 -2.93 9.88 -39.35 -0.39 -3.31 16 17 C -0.09 -1.31 10.05 -39.64 -0.40 -1.71 16 18 C -0.18 -2.77 10.04 -39.60 -0.40 -3.17 16 19 C -0.08 -1.38 9.09 -39.53 -0.36 -1.74 16 20 C -0.13 -2.43 5.47 -104.44 -0.57 -3.01 16 21 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 22 H 0.02 0.45 5.58 -51.93 -0.29 0.16 16 23 H 0.01 0.32 7.27 -51.93 -0.38 -0.06 16 24 H 0.09 1.66 7.31 -51.93 -0.38 1.28 16 25 H 0.06 1.21 8.11 -51.93 -0.42 0.79 16 26 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.39 4.51 8.86 -40.82 -0.36 4.15 16 29 H 0.11 1.35 8.06 -52.48 -0.42 0.93 16 30 H 0.11 1.28 8.06 -52.49 -0.42 0.85 16 31 H 0.11 1.48 8.06 -52.48 -0.42 1.06 16 32 H 0.13 2.30 6.23 -52.49 -0.33 1.97 16 LS Contribution 258.79 15.07 3.90 3.90 Total: -1.00 -30.58 258.79 -8.08 -38.66 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -4.25 Total: 2.70 kcal Atomic # 6 Polarization: -20.98 SS G_CDS: -3.52 Total: -24.50 kcal Atomic # 7 Polarization: -38.46 SS G_CDS: 0.44 Total: -38.03 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.65 Total: 17.26 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -30.58 -8.08 -38.66 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083965597.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.148 kcal (2) G-P(sol) polarization free energy of solvation -30.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds