Wall clock time and date at job start Mon Mar 30 2020 03:31:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86806 * 119.99905 * 2 1 4 4 H 1.48503 * 109.46704 * 269.99223 * 3 2 1 5 5 H 1.48493 * 109.47058 * 29.99464 * 3 2 1 6 6 H 1.48494 * 109.47064 * 149.99575 * 3 2 1 7 7 C 1.37876 * 120.00397 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99660 * 0.02562 * 7 2 1 9 9 C 1.50690 * 120.00560 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47695 * 185.10257 * 9 7 2 11 11 H 1.08999 * 109.29772 * 305.11478 * 10 9 7 12 12 C 1.52859 * 109.29877 * 64.68968 * 10 9 7 13 13 C 1.53436 * 108.83731 * 171.42400 * 12 10 9 14 14 N 1.46926 * 107.78643 * 296.76956 * 13 12 10 15 15 C 1.39918 * 118.91958 * 44.63952 * 14 13 12 16 16 C 1.39080 * 119.13875 * 166.68564 * 15 14 13 17 17 C 1.38019 * 120.03754 * 179.84010 * 16 15 14 18 18 C 1.38308 * 119.91009 * 0.02562 * 17 16 15 19 19 C 1.38117 * 120.16104 * 0.02591 * 18 17 16 20 20 C 1.38508 * 120.30693 * 0.02864 * 19 18 17 21 21 H 0.97003 * 119.99965 * 0.02562 * 1 2 3 22 22 H 1.09002 * 109.47476 * 65.09890 * 9 7 2 23 23 H 1.09006 * 109.47205 * 305.10644 * 9 7 2 24 24 H 1.08994 * 109.57740 * 291.23196 * 12 10 9 25 25 H 1.09003 * 109.57146 * 51.49234 * 12 10 9 26 26 H 1.08996 * 109.79850 * 56.33582 * 13 12 10 27 27 H 1.09000 * 109.79573 * 177.19748 * 13 12 10 28 28 H 0.97002 * 120.53990 * 224.62547 * 14 13 12 29 29 H 1.08004 * 119.97731 * 359.83810 * 16 15 14 30 30 H 1.07998 * 120.04394 * 180.02562 * 17 16 15 31 31 H 1.08004 * 119.92142 * 180.02562 * 18 17 16 32 32 H 1.07997 * 119.85073 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0216 -2.6308 -0.1267 11 1 3.5835 -3.2402 0.6637 12 6 3.6091 -3.1943 -1.4864 13 6 4.3030 -4.5471 -1.6932 14 7 5.7523 -4.3079 -1.7245 15 6 6.3184 -3.4569 -0.7690 16 6 7.7001 -3.4405 -0.6106 17 6 8.2784 -2.6057 0.3241 18 6 7.4821 -1.7861 1.1032 19 6 6.1097 -1.8014 0.9485 20 6 5.5210 -2.6368 0.0137 21 1 -0.4850 0.8401 -0.0004 22 1 3.8745 -0.7611 0.9333 23 1 3.8752 -0.6032 -0.8396 24 1 2.5280 -3.3306 -1.5125 25 1 3.9093 -2.5035 -2.2743 26 1 4.0573 -5.2177 -0.8699 27 1 3.9809 -4.9867 -2.6372 28 1 6.3077 -4.7333 -2.3965 29 1 8.3207 -4.0813 -1.2193 30 1 9.3513 -2.5926 0.4469 31 1 7.9346 -1.1325 1.8344 32 1 5.4928 -1.1590 1.5593 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083965597.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:01 Heat of formation + Delta-G solvation = -4.380404 kcal Electronic energy + Delta-G solvation = -14358.527804 eV Core-core repulsion = 12089.159136 eV Total energy + Delta-G solvation = -2269.368668 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.99066 -37.33203 -36.00557 -34.21902 -31.23572 -30.91553 -29.50876 -25.87906 -24.18043 -23.61018 -22.00826 -20.29137 -19.09862 -18.18218 -17.01688 -16.67447 -16.27677 -15.08360 -14.97668 -14.92595 -14.58013 -14.39964 -14.21871 -13.71723 -13.35547 -13.08124 -12.85382 -12.44466 -12.22934 -11.94414 -11.79552 -11.65218 -11.16893 -11.02554 -10.77775 -10.71664 -9.50566 -8.28887 -8.19285 -6.30514 0.61262 0.80006 1.32763 1.34355 1.46807 2.35012 2.67967 3.04691 3.06303 3.94383 4.00157 4.16384 4.24101 4.36397 4.48336 4.61569 4.69355 4.72632 4.78734 4.85286 5.08413 5.18937 5.29621 5.32968 5.39680 5.47165 5.56984 5.67938 5.77301 5.89836 6.07516 6.30016 6.49391 6.75327 7.07004 7.33112 8.87485 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.032667 B = 0.009545 C = 0.007791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.917708 B = 2932.677577 C = 3593.249890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.008 3.992 3 Si 0.941 3.059 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.252 1.252 7 C -0.519 4.519 8 H 0.040 0.960 9 C 0.005 3.995 10 C -0.027 4.027 11 H 0.053 0.947 12 C -0.118 4.118 13 C 0.129 3.871 14 N -0.746 5.746 15 C 0.200 3.800 16 C -0.195 4.195 17 C -0.084 4.084 18 C -0.183 4.183 19 C -0.099 4.099 20 C -0.162 4.162 21 H 0.265 0.735 22 H 0.017 0.983 23 H 0.007 0.993 24 H 0.063 0.937 25 H 0.051 0.949 26 H 0.055 0.945 27 H 0.105 0.895 28 H 0.411 0.589 29 H 0.144 0.856 30 H 0.150 0.850 31 H 0.133 0.867 32 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.507 -7.196 -2.628 18.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.189 4.189 3 Si 0.765 3.235 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.175 1.175 7 C -0.557 4.557 8 H 0.058 0.942 9 C -0.032 4.032 10 C -0.046 4.046 11 H 0.071 0.929 12 C -0.156 4.156 13 C 0.005 3.995 14 N -0.379 5.379 15 C 0.097 3.903 16 C -0.217 4.217 17 C -0.102 4.102 18 C -0.203 4.203 19 C -0.117 4.117 20 C -0.167 4.167 21 H 0.074 0.926 22 H 0.035 0.965 23 H 0.026 0.974 24 H 0.081 0.919 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.123 0.877 28 H 0.248 0.752 29 H 0.162 0.838 30 H 0.167 0.833 31 H 0.151 0.849 32 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 16.154 -7.125 -2.620 17.849 hybrid contribution -0.415 0.854 -0.079 0.953 sum 15.739 -6.271 -2.699 17.156 Atomic orbital electron populations 1.70049 1.08012 1.27938 1.53004 1.25888 0.95511 1.03022 0.94475 0.85789 0.79549 0.79125 0.79032 1.19528 1.20790 1.17547 1.21424 0.91557 0.93156 1.49556 0.94211 1.19553 0.94035 0.93767 0.95839 1.19675 0.90406 0.97156 0.97323 0.92922 1.21734 1.00289 0.97221 0.96368 1.21564 0.80007 0.95332 1.02623 1.44600 1.07557 1.51700 1.34062 1.17801 0.92328 0.90135 0.89987 1.20937 0.92054 1.04899 1.03829 1.21175 1.00540 0.94312 0.94190 1.21100 0.92798 1.03153 1.03200 1.21150 0.95858 0.97530 0.97181 1.19634 0.95236 1.00524 1.01272 0.92591 0.96463 0.97414 0.91861 0.93026 0.92691 0.87728 0.75154 0.83831 0.83276 0.84930 0.87317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.05 13.96 21.45 0.30 -59.75 16 2 C 0.01 0.46 5.47 84.65 0.46 0.92 16 3 Si 0.94 45.74 27.37 68.60 1.88 47.62 16 4 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 5 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 6 H -0.25 -11.59 6.69 99.48 0.67 -10.92 16 7 C -0.52 -30.23 8.97 25.60 0.23 -30.00 16 8 H 0.04 2.51 7.49 -2.91 -0.02 2.49 16 9 C 0.01 0.26 3.13 29.84 0.09 0.35 16 10 C -0.03 -1.14 2.28 -11.62 -0.03 -1.17 16 11 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 12 C -0.12 -4.41 5.05 30.69 0.15 -4.25 16 13 C 0.13 3.54 7.11 86.44 0.61 4.16 16 14 N -0.75 -19.24 5.80 -337.68 -1.96 -21.19 16 15 C 0.20 6.16 6.47 38.14 0.25 6.41 16 16 C -0.19 -4.90 9.88 22.42 0.22 -4.68 16 17 C -0.08 -2.03 10.05 22.23 0.22 -1.80 16 18 C -0.18 -5.20 10.04 22.26 0.22 -4.97 16 19 C -0.10 -3.49 9.09 22.31 0.20 -3.29 16 20 C -0.16 -6.00 5.47 -19.75 -0.11 -6.11 16 21 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 22 H 0.02 0.85 5.58 -2.39 -0.01 0.83 16 23 H 0.01 0.38 7.27 -2.38 -0.02 0.36 16 24 H 0.06 2.59 7.31 -2.39 -0.02 2.57 16 25 H 0.05 2.01 8.11 -2.39 -0.02 1.99 16 26 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 28 H 0.41 7.82 8.86 -92.71 -0.82 7.00 16 29 H 0.14 2.67 8.06 -2.91 -0.02 2.65 16 30 H 0.15 2.52 8.06 -2.91 -0.02 2.50 16 31 H 0.13 3.12 8.06 -2.91 -0.02 3.10 16 32 H 0.11 4.07 6.23 -2.91 -0.02 4.05 16 Total: -1.00 -67.88 258.79 3.01 -64.87 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: 0.25 Total: 12.88 kcal Atomic # 6 Polarization: -46.97 SS G_CDS: 2.54 Total: -44.43 kcal Atomic # 7 Polarization: -79.29 SS G_CDS: -1.66 Total: -80.94 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 1.88 Total: 47.62 kcal Total: -67.88 3.01 -64.87 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083965597.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.494 kcal (2) G-P(sol) polarization free energy of solvation -67.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds