Wall clock time and date at job start Mon Mar 30 2020 03:27:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99889 * 2 1 4 4 H 1.48502 * 109.47159 * 270.00509 * 3 2 1 5 5 H 1.48499 * 109.47264 * 30.00184 * 3 2 1 6 6 H 1.48497 * 109.47473 * 150.00412 * 3 2 1 7 7 C 1.37871 * 120.00211 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00274 * 359.97438 * 7 2 1 9 9 C 1.50708 * 119.99984 * 179.97438 * 7 2 1 10 10 H 1.09000 * 109.47144 * 59.99698 * 9 7 2 11 11 N 1.46895 * 109.46870 * 299.99651 * 9 7 2 12 12 C 1.50700 * 109.46886 * 179.97438 * 9 7 2 13 13 C 1.38262 * 120.03298 * 79.97922 * 12 9 7 14 14 C 1.38102 * 119.93302 * 180.02562 * 13 12 9 15 15 C 1.38498 * 120.21555 * 359.97438 * 14 13 12 16 16 C 1.38217 * 119.85000 * 359.97438 * 15 14 13 17 17 C 1.38098 * 120.03311 * 259.99621 * 12 9 7 18 18 C 1.51377 * 109.75602 * 180.26235 * 16 15 14 19 19 C 1.54503 * 105.09064 * 342.46842 * 18 16 15 20 20 C 1.51369 * 130.39099 * 180.02562 * 15 14 13 21 21 H 0.96993 * 120.00064 * 359.97438 * 1 2 3 22 22 H 1.00903 * 111.00166 * 300.00066 * 11 9 7 23 23 H 1.00897 * 111.00356 * 63.96014 * 11 9 7 24 24 H 1.08001 * 120.03041 * 0.02562 * 13 12 9 25 25 H 1.07997 * 119.88930 * 179.97438 * 14 13 12 26 26 H 1.08000 * 119.89234 * 0.02562 * 17 12 9 27 27 H 1.08999 * 110.30052 * 101.47315 * 18 16 15 28 28 H 1.09001 * 110.29951 * 223.62244 * 18 16 15 29 29 H 1.09005 * 111.02233 * 268.37708 * 19 18 16 30 30 H 1.08998 * 110.86064 * 144.85447 * 19 18 16 31 31 H 1.09000 * 110.30102 * 316.07411 * 20 15 14 32 32 H 1.09001 * 110.30690 * 78.22418 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4403 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 1 3.8753 -0.6802 0.8888 11 7 4.0007 -0.5012 -1.2006 12 6 4.0139 -2.6147 -0.0010 13 6 4.0478 -3.3368 -1.1796 14 6 4.5080 -4.6389 -1.1770 15 6 4.9366 -5.2243 0.0027 16 6 4.9038 -4.5021 1.1807 17 6 4.4406 -3.1969 1.1764 18 6 5.4255 -5.3541 2.3180 19 6 5.3596 -6.8066 1.7955 20 6 5.4775 -6.6128 0.2687 21 1 -0.4850 0.8400 0.0004 22 1 3.6769 -0.9586 -2.0397 23 1 3.7313 0.4711 -1.1918 24 1 3.7146 -2.8830 -2.1012 25 1 4.5338 -5.2024 -2.0979 26 1 4.4132 -2.6324 2.0967 27 1 6.4541 -5.0812 2.5539 28 1 4.7918 -5.2399 3.1975 29 1 4.4090 -7.2727 2.0549 30 1 6.1944 -7.3945 2.1769 31 1 4.8789 -7.3585 -0.2545 32 1 6.5204 -6.6784 -0.0415 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084347064.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:25 Heat of formation + Delta-G solvation = 16.738939 kcal Electronic energy + Delta-G solvation = -14138.670175 eV Core-core repulsion = 11870.217311 eV Total energy + Delta-G solvation = -2268.452865 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.61093 -36.34662 -33.82623 -31.75322 -30.84564 -28.26699 -27.20955 -25.76414 -22.56215 -21.76184 -20.48353 -18.98693 -17.04465 -15.87596 -15.48756 -15.34070 -14.53556 -14.21052 -13.50467 -13.09589 -12.74927 -12.67737 -12.45251 -12.28829 -11.68779 -11.45780 -11.25628 -11.00632 -10.85265 -10.64552 -10.36284 -10.30935 -9.98138 -9.51026 -8.78567 -8.16024 -7.87047 -7.39705 -6.23395 -4.26820 2.02618 2.06276 3.12816 3.27263 3.28079 4.22844 4.40445 4.72408 4.84814 5.06964 5.11951 5.42314 5.51493 5.58797 5.77287 5.84796 5.88746 5.96240 5.99268 6.05000 6.24583 6.26650 6.34622 6.53832 6.73295 6.91775 7.11511 7.17539 7.38352 7.56010 7.69223 8.07736 8.28722 8.49542 8.84528 9.35688 10.89283 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.049859 B = 0.007434 C = 0.007264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.452100 B = 3765.639418 C = 3853.635158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.072 3.928 3 Si 0.873 3.127 4 H -0.275 1.275 5 H -0.290 1.290 6 H -0.259 1.259 7 C -0.544 4.544 8 H 0.076 0.924 9 C 0.206 3.794 10 H 0.049 0.951 11 N -0.848 5.848 12 C -0.017 4.017 13 C -0.106 4.106 14 C -0.111 4.111 15 C -0.126 4.126 16 C -0.103 4.103 17 C -0.110 4.110 18 C -0.079 4.079 19 C -0.120 4.120 20 C -0.075 4.075 21 H 0.266 0.734 22 H 0.331 0.669 23 H 0.317 0.683 24 H 0.120 0.880 25 H 0.110 0.890 26 H 0.114 0.886 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.267 -9.230 1.088 13.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.131 4.131 3 Si 0.702 3.298 4 H -0.201 1.201 5 H -0.217 1.217 6 H -0.184 1.184 7 C -0.584 4.584 8 H 0.094 0.906 9 C 0.097 3.903 10 H 0.067 0.933 11 N -0.382 5.382 12 C -0.017 4.017 13 C -0.125 4.125 14 C -0.129 4.129 15 C -0.127 4.127 16 C -0.103 4.103 17 C -0.128 4.128 18 C -0.116 4.116 19 C -0.157 4.157 20 C -0.112 4.112 21 H 0.076 0.924 22 H 0.143 0.857 23 H 0.133 0.867 24 H 0.138 0.862 25 H 0.128 0.872 26 H 0.132 0.868 27 H 0.092 0.908 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 10.832 -9.290 1.375 14.336 hybrid contribution -0.879 1.189 -0.257 1.500 sum 9.953 -8.101 1.118 12.882 Atomic orbital electron populations 1.69896 1.06205 1.27176 1.49444 1.25039 0.94853 0.99030 0.94189 0.87000 0.80370 0.83807 0.78614 1.20131 1.21731 1.18373 1.21646 0.89613 0.94959 1.52186 0.90566 1.18491 0.93628 0.87554 0.90594 0.93327 1.59724 1.66950 1.05552 1.05944 1.19883 0.93113 0.96555 0.92173 1.20794 0.99850 0.93427 0.98408 1.20488 1.00599 0.95253 0.96525 1.20334 1.02358 0.96082 0.93876 1.20397 1.00300 0.94297 0.95318 1.20440 1.00375 0.93883 0.98128 1.21007 1.00697 0.93324 0.96557 1.22298 1.01835 0.96370 0.95231 1.20936 1.00374 0.93858 0.96081 0.92381 0.85661 0.86744 0.86249 0.87234 0.86816 0.90829 0.91150 0.91212 0.91165 0.91465 0.91074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.78 13.96 55.43 0.77 -26.01 16 2 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 3 Si 0.87 20.97 24.61 -169.99 -4.18 16.79 16 4 H -0.27 -6.32 7.01 56.52 0.40 -5.92 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.26 -6.06 6.54 56.52 0.37 -5.69 16 7 C -0.54 -15.18 9.28 -34.44 -0.32 -15.50 16 8 H 0.08 2.35 7.98 -52.49 -0.42 1.94 16 9 C 0.21 4.96 2.48 -70.02 -0.17 4.78 16 10 H 0.05 1.21 7.06 -51.93 -0.37 0.84 16 11 N -0.85 -18.90 8.98 -6.65 -0.06 -18.96 16 12 C -0.02 -0.36 4.89 -104.66 -0.51 -0.87 16 13 C -0.11 -2.11 9.29 -39.62 -0.37 -2.48 16 14 C -0.11 -1.92 10.04 -39.54 -0.40 -2.32 16 15 C -0.13 -2.10 6.14 -104.21 -0.64 -2.74 16 16 C -0.10 -1.79 6.14 -104.20 -0.64 -2.43 16 17 C -0.11 -2.18 9.66 -39.54 -0.38 -2.57 16 18 C -0.08 -1.05 6.78 -26.76 -0.18 -1.23 16 19 C -0.12 -1.37 7.09 -25.23 -0.18 -1.55 16 20 C -0.08 -0.95 6.77 -26.85 -0.18 -1.14 16 21 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 22 H 0.33 6.97 7.35 -39.29 -0.29 6.68 16 23 H 0.32 7.15 4.30 -39.29 -0.17 6.98 16 24 H 0.12 2.28 6.67 -52.49 -0.35 1.93 16 25 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 26 H 0.11 2.16 8.03 -52.49 -0.42 1.73 16 27 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 258.84 15.07 3.90 3.90 Total: -1.00 -30.11 258.84 -7.79 -37.90 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: -4.15 Total: 12.47 kcal Atomic # 6 Polarization: -22.01 SS G_CDS: -4.07 Total: -26.08 kcal Atomic # 7 Polarization: -45.68 SS G_CDS: 0.71 Total: -44.97 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -4.18 Total: 16.79 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -30.11 -7.79 -37.90 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084347064.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.636 kcal (2) G-P(sol) polarization free energy of solvation -30.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds