Wall clock time and date at job start Mon Mar 30 2020 03:27:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99889 * 2 1 4 4 H 1.48502 * 109.47159 * 270.00509 * 3 2 1 5 5 H 1.48499 * 109.47264 * 30.00184 * 3 2 1 6 6 H 1.48497 * 109.47473 * 150.00412 * 3 2 1 7 7 C 1.37871 * 120.00211 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00274 * 359.97438 * 7 2 1 9 9 C 1.50708 * 119.99984 * 179.97438 * 7 2 1 10 10 H 1.09000 * 109.47144 * 59.99698 * 9 7 2 11 11 N 1.46895 * 109.46870 * 299.99651 * 9 7 2 12 12 C 1.50700 * 109.46886 * 179.97438 * 9 7 2 13 13 C 1.38262 * 120.03298 * 79.97922 * 12 9 7 14 14 C 1.38102 * 119.93302 * 180.02562 * 13 12 9 15 15 C 1.38498 * 120.21555 * 359.97438 * 14 13 12 16 16 C 1.38217 * 119.85000 * 359.97438 * 15 14 13 17 17 C 1.38098 * 120.03311 * 259.99621 * 12 9 7 18 18 C 1.51377 * 109.75602 * 180.26235 * 16 15 14 19 19 C 1.54503 * 105.09064 * 342.46842 * 18 16 15 20 20 C 1.51369 * 130.39099 * 180.02562 * 15 14 13 21 21 H 0.96993 * 120.00064 * 359.97438 * 1 2 3 22 22 H 1.00903 * 111.00166 * 300.00066 * 11 9 7 23 23 H 1.00897 * 111.00356 * 63.96014 * 11 9 7 24 24 H 1.08001 * 120.03041 * 0.02562 * 13 12 9 25 25 H 1.07997 * 119.88930 * 179.97438 * 14 13 12 26 26 H 1.08000 * 119.89234 * 0.02562 * 17 12 9 27 27 H 1.08999 * 110.30052 * 101.47315 * 18 16 15 28 28 H 1.09001 * 110.29951 * 223.62244 * 18 16 15 29 29 H 1.09005 * 111.02233 * 268.37708 * 19 18 16 30 30 H 1.08998 * 110.86064 * 144.85447 * 19 18 16 31 31 H 1.09000 * 110.30102 * 316.07411 * 20 15 14 32 32 H 1.09001 * 110.30690 * 78.22418 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4403 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 1 3.8753 -0.6802 0.8888 11 7 4.0007 -0.5012 -1.2006 12 6 4.0139 -2.6147 -0.0010 13 6 4.0478 -3.3368 -1.1796 14 6 4.5080 -4.6389 -1.1770 15 6 4.9366 -5.2243 0.0027 16 6 4.9038 -4.5021 1.1807 17 6 4.4406 -3.1969 1.1764 18 6 5.4255 -5.3541 2.3180 19 6 5.3596 -6.8066 1.7955 20 6 5.4775 -6.6128 0.2687 21 1 -0.4850 0.8400 0.0004 22 1 3.6769 -0.9586 -2.0397 23 1 3.7313 0.4711 -1.1918 24 1 3.7146 -2.8830 -2.1012 25 1 4.5338 -5.2024 -2.0979 26 1 4.4132 -2.6324 2.0967 27 1 6.4541 -5.0812 2.5539 28 1 4.7918 -5.2399 3.1975 29 1 4.4090 -7.2727 2.0549 30 1 6.1944 -7.3945 2.1769 31 1 4.8789 -7.3585 -0.2545 32 1 6.5204 -6.6784 -0.0415 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084347064.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:24 Heat of formation + Delta-G solvation = -2.912706 kcal Electronic energy + Delta-G solvation = -14139.522335 eV Core-core repulsion = 11870.217311 eV Total energy + Delta-G solvation = -2269.305024 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.94659 -37.89409 -35.46217 -33.78917 -32.23291 -29.65581 -28.57809 -27.60479 -24.17711 -23.24261 -21.57721 -20.54531 -19.13644 -17.62658 -16.89810 -16.55256 -16.20988 -15.68850 -15.23909 -14.74497 -14.40337 -14.02762 -13.84220 -13.61859 -13.35958 -12.99222 -12.84237 -12.50491 -12.19043 -11.96066 -11.92095 -11.68178 -11.55237 -11.37071 -10.94788 -9.68651 -9.47063 -9.04500 -8.43251 -6.52261 0.59227 0.60808 1.21102 1.29477 1.39300 2.18187 2.87652 2.96411 3.57937 3.76000 3.93808 4.23383 4.25280 4.27123 4.34348 4.52137 4.75614 4.77334 4.80804 4.91238 5.00383 5.03026 5.16473 5.31336 5.37257 5.39150 5.45831 5.62614 5.79318 5.89291 6.04189 6.25354 6.37155 6.52625 6.65848 7.14487 8.73105 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.049859 B = 0.007434 C = 0.007264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.452100 B = 3765.639418 C = 3853.635158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C 0.017 3.983 3 Si 0.941 3.059 4 H -0.253 1.253 5 H -0.289 1.289 6 H -0.249 1.249 7 C -0.549 4.549 8 H 0.028 0.972 9 C 0.215 3.785 10 H 0.039 0.961 11 N -0.837 5.837 12 C -0.053 4.053 13 C -0.124 4.124 14 C -0.113 4.113 15 C -0.126 4.126 16 C -0.111 4.111 17 C -0.132 4.132 18 C -0.080 4.080 19 C -0.113 4.113 20 C -0.074 4.074 21 H 0.270 0.730 22 H 0.338 0.662 23 H 0.316 0.684 24 H 0.117 0.883 25 H 0.139 0.861 26 H 0.110 0.890 27 H 0.090 0.910 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.102 0.898 31 H 0.082 0.918 32 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.550 -10.457 1.091 16.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.182 4.182 3 Si 0.766 3.234 4 H -0.178 1.178 5 H -0.216 1.216 6 H -0.173 1.173 7 C -0.588 4.588 8 H 0.047 0.953 9 C 0.106 3.894 10 H 0.056 0.944 11 N -0.370 5.370 12 C -0.053 4.053 13 C -0.143 4.143 14 C -0.131 4.131 15 C -0.127 4.127 16 C -0.111 4.111 17 C -0.150 4.150 18 C -0.117 4.117 19 C -0.150 4.150 20 C -0.111 4.111 21 H 0.079 0.921 22 H 0.151 0.849 23 H 0.132 0.868 24 H 0.135 0.865 25 H 0.156 0.844 26 H 0.128 0.872 27 H 0.109 0.891 28 H 0.092 0.908 29 H 0.090 0.910 30 H 0.120 0.880 31 H 0.101 0.899 32 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 13.130 -10.533 1.365 16.888 hybrid contribution -1.607 1.429 -0.244 2.164 sum 11.522 -9.104 1.121 14.728 Atomic orbital electron populations 1.70045 1.08144 1.28435 1.51049 1.25919 0.95626 1.03066 0.93600 0.85908 0.79083 0.78586 0.79866 1.17781 1.21572 1.17346 1.21831 0.91894 0.93211 1.51890 0.95325 1.18266 0.90874 0.89593 0.90714 0.94351 1.59672 1.66298 1.05384 1.05653 1.19817 0.95793 0.95821 0.93879 1.20889 1.00872 0.94793 0.97708 1.20807 0.99577 0.94378 0.98345 1.20953 1.00558 0.98091 0.93050 1.20900 0.99100 0.93477 0.97641 1.20573 1.01504 0.95505 0.97437 1.21150 1.01419 0.93925 0.95233 1.22344 1.03417 0.95139 0.94115 1.21067 1.01514 0.91253 0.97232 0.92112 0.84915 0.86819 0.86504 0.84358 0.87164 0.89131 0.90811 0.91020 0.87954 0.89938 0.89014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.29 13.96 21.44 0.30 -57.99 16 2 C 0.02 0.99 5.47 84.65 0.46 1.46 16 3 Si 0.94 43.59 24.61 68.60 1.69 45.28 16 4 H -0.25 -10.78 7.01 99.48 0.70 -10.08 16 5 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 6 H -0.25 -11.09 6.54 99.48 0.65 -10.44 16 7 C -0.55 -31.91 9.28 25.60 0.24 -31.67 16 8 H 0.03 1.88 7.98 -2.91 -0.02 1.86 16 9 C 0.22 10.58 2.48 43.43 0.11 10.69 16 10 H 0.04 1.94 7.06 -2.39 -0.02 1.93 16 11 N -0.84 -37.10 8.98 -174.95 -1.57 -38.67 16 12 C -0.05 -2.34 4.89 -19.89 -0.10 -2.44 16 13 C -0.12 -4.98 9.29 22.24 0.21 -4.77 16 14 C -0.11 -3.78 10.04 22.30 0.22 -3.56 16 15 C -0.13 -3.91 6.14 -19.59 -0.12 -4.03 16 16 C -0.11 -3.71 6.14 -19.59 -0.12 -3.83 16 17 C -0.13 -5.33 9.66 22.30 0.22 -5.11 16 18 C -0.08 -1.92 6.78 30.57 0.21 -1.71 16 19 C -0.11 -2.09 7.09 31.56 0.22 -1.87 16 20 C -0.07 -1.56 6.77 30.52 0.21 -1.35 16 21 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 22 H 0.34 14.26 7.35 -89.69 -0.66 13.60 16 23 H 0.32 13.87 4.30 -89.70 -0.39 13.49 16 24 H 0.12 4.56 6.67 -2.91 -0.02 4.54 16 25 H 0.14 3.72 8.06 -2.91 -0.02 3.70 16 26 H 0.11 4.34 8.03 -2.91 -0.02 4.32 16 27 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 30 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -67.34 258.84 2.19 -65.15 By element: Atomic # 1 Polarization: 34.42 SS G_CDS: 0.02 Total: 34.43 kcal Atomic # 6 Polarization: -49.96 SS G_CDS: 1.75 Total: -48.20 kcal Atomic # 7 Polarization: -95.39 SS G_CDS: -1.27 Total: -96.66 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 1.69 Total: 45.28 kcal Total: -67.34 2.19 -65.15 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084347064.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.238 kcal (2) G-P(sol) polarization free energy of solvation -67.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds