Wall clock time and date at job start Mon Mar 30 2020 03:30:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 119.99909 * 2 1 4 4 H 1.48497 * 109.47162 * 269.99947 * 3 2 1 5 5 H 1.48501 * 109.46985 * 30.00207 * 3 2 1 6 6 H 1.48507 * 109.47072 * 149.99902 * 3 2 1 7 7 C 1.37876 * 119.99841 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99818 * 0.02562 * 7 2 1 9 9 C 1.50704 * 119.99685 * 179.97438 * 7 2 1 10 10 C 1.52994 * 109.47087 * 180.02562 * 9 7 2 11 11 H 1.09005 * 109.57329 * 304.74932 * 10 9 7 12 12 C 1.53429 * 109.57394 * 64.99820 * 10 9 7 13 13 N 1.46932 * 107.79710 * 182.99832 * 12 10 9 14 14 C 1.39921 * 118.91086 * 315.29549 * 13 12 10 15 15 C 1.39074 * 119.13389 * 193.51655 * 14 13 12 16 16 C 1.38020 * 120.03492 * 180.19124 * 15 14 13 17 17 C 1.38315 * 119.90646 * 0.03914 * 16 15 14 18 18 C 1.38116 * 120.16289 * 359.91713 * 17 16 15 19 19 C 1.38506 * 120.30953 * 359.96913 * 18 17 16 20 20 C 1.50594 * 118.93527 * 180.42316 * 19 18 17 21 21 H 0.97004 * 119.99897 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.47109 * 60.00565 * 9 7 2 23 23 H 1.09004 * 109.47023 * 300.00291 * 9 7 2 24 24 H 1.09004 * 109.79515 * 63.42870 * 12 10 9 25 25 H 1.09000 * 109.79824 * 302.57324 * 12 10 9 26 26 H 0.96993 * 120.54308 * 135.26640 * 13 12 10 27 27 H 1.08000 * 119.98534 * 0.23781 * 15 14 13 28 28 H 1.07995 * 120.04913 * 180.31409 * 16 15 14 29 29 H 1.08003 * 119.91215 * 179.97438 * 17 16 15 30 30 H 1.08005 * 119.85081 * 179.97438 * 18 17 16 31 31 H 1.09004 * 109.30052 * 320.75595 * 20 19 18 32 32 H 1.09000 * 109.29669 * 80.12387 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0215 -2.6364 0.0001 11 1 3.5917 -3.1757 0.8443 12 6 3.6163 -3.3250 -1.3098 13 7 4.0607 -4.7237 -1.2380 14 6 5.3465 -5.0013 -0.7611 15 6 5.8794 -6.2718 -0.9510 16 6 7.1444 -6.5671 -0.4846 17 6 7.8808 -5.5981 0.1725 18 6 7.3540 -4.3354 0.3614 19 6 6.0863 -4.0298 -0.1054 20 6 5.5462 -2.6405 0.1091 21 1 -0.4850 0.8401 0.0004 22 1 3.8752 -0.6797 0.8895 23 1 3.8745 -0.6807 -0.8905 24 1 4.0971 -2.8278 -2.1523 25 1 2.5333 -3.2874 -1.4270 26 1 3.4722 -5.4428 -1.5163 27 1 5.3034 -7.0276 -1.4643 28 1 7.5605 -7.5521 -0.6364 29 1 8.8706 -5.8292 0.5378 30 1 7.9333 -3.5826 0.8756 31 1 5.8376 -2.2895 1.0991 32 1 5.9630 -1.9717 -0.6440 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084767966.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:43 Heat of formation + Delta-G solvation = -7.805215 kcal Electronic energy + Delta-G solvation = -14097.090385 eV Core-core repulsion = 11827.573206 eV Total energy + Delta-G solvation = -2269.517179 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.89622 -37.73751 -35.33980 -34.25506 -32.30705 -30.45647 -29.03564 -25.64456 -24.90879 -23.32564 -22.11344 -20.23967 -18.93351 -18.22114 -16.85533 -16.67714 -16.07701 -15.63586 -14.92453 -14.78436 -14.64343 -14.28857 -14.05893 -13.83574 -13.52526 -13.22619 -12.52603 -12.51424 -12.28830 -11.85590 -11.74541 -11.69441 -11.29913 -11.03304 -10.76706 -10.71907 -9.52336 -8.26884 -8.21296 -6.29990 0.59102 0.80655 1.37389 1.39296 1.50763 2.37890 2.65919 3.03290 3.09356 3.87214 4.03916 4.11800 4.22197 4.35252 4.51946 4.57753 4.71648 4.75586 4.82928 4.96964 5.05626 5.07826 5.16573 5.29200 5.40608 5.50077 5.59416 5.68728 5.73417 5.82170 6.08048 6.30859 6.49009 6.76808 6.99133 7.34302 8.89507 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.056268 B = 0.006869 C = 0.006279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.496069 B = 4075.330730 C = 4458.264831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.005 3.995 3 Si 0.946 3.054 4 H -0.266 1.266 5 H -0.287 1.287 6 H -0.247 1.247 7 C -0.523 4.523 8 H 0.036 0.964 9 C -0.003 4.003 10 C -0.082 4.082 11 H 0.047 0.953 12 C 0.140 3.860 13 N -0.751 5.751 14 C 0.197 3.803 15 C -0.203 4.203 16 C -0.084 4.084 17 C -0.182 4.182 18 C -0.086 4.086 19 C -0.173 4.173 20 C -0.065 4.065 21 H 0.265 0.735 22 H 0.021 0.979 23 H 0.023 0.977 24 H 0.053 0.947 25 H 0.070 0.930 26 H 0.405 0.595 27 H 0.132 0.868 28 H 0.145 0.855 29 H 0.140 0.860 30 H 0.132 0.868 31 H 0.075 0.925 32 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.495 -9.574 -1.597 18.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.191 4.191 3 Si 0.770 3.230 4 H -0.192 1.192 5 H -0.213 1.213 6 H -0.170 1.170 7 C -0.561 4.561 8 H 0.054 0.946 9 C -0.041 4.041 10 C -0.101 4.101 11 H 0.065 0.935 12 C 0.016 3.984 13 N -0.382 5.382 14 C 0.094 3.906 15 C -0.226 4.226 16 C -0.102 4.102 17 C -0.202 4.202 18 C -0.104 4.104 19 C -0.178 4.178 20 C -0.102 4.102 21 H 0.074 0.926 22 H 0.040 0.960 23 H 0.041 0.959 24 H 0.071 0.929 25 H 0.088 0.912 26 H 0.241 0.759 27 H 0.149 0.851 28 H 0.163 0.837 29 H 0.158 0.842 30 H 0.150 0.850 31 H 0.094 0.906 32 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 15.293 -9.271 -1.611 17.956 hybrid contribution -0.796 0.611 -0.062 1.005 sum 14.497 -8.660 -1.674 16.969 Atomic orbital electron populations 1.70067 1.08262 1.28008 1.52935 1.25961 0.95518 1.03334 0.94315 0.85720 0.79573 0.78570 0.79185 1.19152 1.21317 1.17005 1.21420 0.91731 0.93041 1.49862 0.94551 1.19518 0.94181 0.93594 0.96794 1.21174 0.94882 0.96786 0.97264 0.93475 1.21405 0.99302 0.81179 0.96541 1.44801 1.13542 1.07501 1.72306 1.17970 0.85718 0.94124 0.92775 1.20910 0.98243 0.95587 1.07847 1.21183 0.93214 0.99950 0.95901 1.21144 1.01546 0.93413 1.04089 1.21111 0.93635 0.97595 0.98078 1.19603 0.96961 0.96321 1.04893 1.20371 0.94245 0.93450 1.02177 0.92635 0.96034 0.95903 0.92919 0.91163 0.75931 0.85057 0.83687 0.84189 0.84963 0.90624 0.91070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.30 13.96 21.45 0.30 -59.00 16 2 C 0.01 0.31 5.47 84.65 0.46 0.77 16 3 Si 0.95 43.83 27.47 68.60 1.88 45.72 16 4 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 5 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 6 H -0.25 -10.60 6.54 99.48 0.65 -9.95 16 7 C -0.52 -29.44 8.94 25.60 0.23 -29.21 16 8 H 0.04 2.25 7.33 -2.91 -0.02 2.23 16 9 C 0.00 -0.14 3.51 29.85 0.10 -0.03 16 10 C -0.08 -3.24 2.31 -10.70 -0.02 -3.27 16 11 H 0.05 2.05 8.14 -2.38 -0.02 2.03 16 12 C 0.14 5.23 6.24 86.44 0.54 5.77 16 13 N -0.75 -23.82 5.80 -337.66 -1.96 -25.78 16 14 C 0.20 6.10 6.47 38.14 0.25 6.34 16 15 C -0.20 -5.19 9.88 22.42 0.22 -4.97 16 16 C -0.08 -1.84 10.05 22.24 0.22 -1.62 16 17 C -0.18 -4.05 10.04 22.26 0.22 -3.83 16 18 C -0.09 -2.22 9.66 22.30 0.22 -2.01 16 19 C -0.17 -5.41 5.76 -19.75 -0.11 -5.52 16 20 C -0.07 -2.17 5.08 29.77 0.15 -2.02 16 21 H 0.26 15.45 8.31 -92.70 -0.77 14.68 16 22 H 0.02 0.98 7.20 -2.39 -0.02 0.96 16 23 H 0.02 1.01 7.57 -2.39 -0.02 0.99 16 24 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 25 H 0.07 2.89 6.93 -2.39 -0.02 2.88 16 26 H 0.41 11.01 8.86 -92.71 -0.82 10.18 16 27 H 0.13 2.81 8.06 -2.91 -0.02 2.78 16 28 H 0.15 2.24 8.06 -2.91 -0.02 2.22 16 29 H 0.14 2.31 8.06 -2.91 -0.02 2.28 16 30 H 0.13 2.89 8.06 -2.91 -0.02 2.86 16 31 H 0.08 2.36 8.12 -2.39 -0.02 2.34 16 32 H 0.07 2.27 8.12 -2.39 -0.02 2.25 16 Total: -1.00 -64.57 262.33 2.93 -61.64 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: 0.23 Total: 17.03 kcal Atomic # 6 Polarization: -42.07 SS G_CDS: 2.48 Total: -39.60 kcal Atomic # 7 Polarization: -83.13 SS G_CDS: -1.66 Total: -84.79 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 1.88 Total: 45.72 kcal Total: -64.57 2.93 -61.64 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084767966.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.831 kcal (2) G-P(sol) polarization free energy of solvation -64.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds