Wall clock time and date at job start Mon Mar 30 2020 02:41:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.33731 * 126.07507 * 2 1 4 4 C 1.30920 * 109.78145 * 180.02562 * 3 2 1 5 5 N 1.35474 * 108.88155 * 0.02562 * 4 3 2 6 6 C 1.36685 * 134.40121 * 179.97438 * 5 4 3 7 7 C 1.36130 * 120.65389 * 180.02562 * 6 5 4 8 8 C 1.50699 * 118.78852 * 180.02562 * 7 6 5 9 9 N 1.32334 * 122.42463 * 359.67006 * 7 6 5 10 10 C 1.33930 * 121.05411 * 0.64932 * 9 7 6 11 11 C 1.40142 * 120.72280 * 179.67282 * 10 9 7 12 12 H 1.08004 * 119.99710 * 172.14776 * 11 10 9 13 13 C 1.40092 * 120.00265 * 352.13621 * 11 10 9 14 14 N 1.30720 * 119.99701 * 173.14918 * 13 11 10 15 15 Si 1.86797 * 119.99691 * 352.88032 * 13 11 10 16 16 H 1.48509 * 109.46946 * 180.27240 * 15 13 11 17 17 H 1.48500 * 109.47243 * 300.26881 * 15 13 11 18 18 H 1.48499 * 109.47321 * 60.27461 * 15 13 11 19 19 C 1.35911 * 126.07581 * 180.02562 * 2 1 3 20 20 H 1.09004 * 109.47329 * 263.99177 * 1 2 3 21 21 H 1.08998 * 109.47745 * 23.99080 * 1 2 3 22 22 H 1.09005 * 109.47587 * 143.99385 * 1 2 3 23 23 H 1.08002 * 125.56498 * 180.02562 * 4 3 2 24 24 H 1.08005 * 119.67208 * 0.02562 * 6 5 4 25 25 H 1.09001 * 109.47415 * 89.99930 * 8 7 6 26 26 H 1.09001 * 109.47207 * 209.99677 * 8 7 6 27 27 H 1.08999 * 109.47031 * 329.99800 * 8 7 6 28 28 H 0.96996 * 120.00623 * 354.26277 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2944 1.0809 0.0000 4 6 3.5510 0.7136 -0.0006 5 7 3.6122 -0.6398 -0.0015 6 6 4.6310 -1.5511 -0.0028 7 6 4.3675 -2.8866 -0.0041 8 6 5.5228 -3.8543 -0.0049 9 7 3.1343 -3.3666 0.0024 10 6 2.0743 -2.5480 -0.0025 11 6 0.7713 -3.0639 -0.0025 12 1 -0.0721 -2.4006 0.1214 13 6 0.5626 -4.4398 -0.1634 14 7 -0.6383 -4.9386 -0.0301 15 14 1.9991 -5.5603 -0.5759 16 1 1.5162 -6.9593 -0.6989 17 1 2.6079 -5.1320 -1.8609 18 1 3.0152 -5.4806 0.5042 19 6 2.3073 -1.0985 -0.0005 20 1 -0.3634 -0.1076 1.0220 21 1 -0.3634 0.9388 -0.4178 22 1 -0.3634 -0.8313 -0.6041 23 1 4.4005 1.3806 -0.0003 24 1 5.6551 -1.2081 -0.0029 25 1 5.8013 -4.0885 1.0226 26 1 5.2299 -4.7694 -0.5195 27 1 6.3728 -3.4048 -0.5183 28 1 -1.3694 -4.3718 0.2614 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089195467.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:58 Heat of formation + Delta-G solvation = 62.246050 kcal Electronic energy + Delta-G solvation = -14363.890501 eV Core-core repulsion = 11993.870629 eV Total energy + Delta-G solvation = -2370.019872 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.65976 -37.36913 -34.74196 -32.88196 -31.58989 -30.06946 -27.23828 -26.44140 -25.12222 -21.97814 -20.94727 -19.51334 -18.79917 -17.06180 -15.78778 -15.01194 -14.76937 -14.36220 -13.32305 -13.18395 -13.00941 -12.78580 -12.32386 -12.25128 -11.86229 -11.76889 -11.67042 -11.23133 -10.63024 -10.41426 -9.88416 -9.74614 -9.47643 -9.41435 -8.28111 -7.94197 -7.52554 -6.83668 -5.17548 1.99553 2.46197 3.43225 3.50232 3.76988 3.82931 3.85481 4.24563 4.29397 5.09496 5.20857 5.36103 5.52144 5.65249 5.84859 6.00032 6.11171 6.14465 6.27211 6.30576 6.47380 6.59474 6.69290 6.81440 7.01364 7.24528 7.47794 7.67360 7.81597 8.15586 8.30378 8.75492 9.34977 9.56201 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.026576 B = 0.015470 C = 0.009911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.345515 B = 1809.468999 C = 2824.525108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.013 3.987 3 N -0.490 5.490 4 C 0.120 3.880 5 N -0.323 5.323 6 C -0.218 4.218 7 C 0.180 3.820 8 C -0.092 4.092 9 N -0.629 5.629 10 C 0.287 3.713 11 C -0.405 4.405 12 H 0.104 0.896 13 C 0.044 3.956 14 N -0.763 5.763 15 Si 1.143 2.857 16 H -0.328 1.328 17 H -0.290 1.290 18 H -0.260 1.260 19 C -0.051 4.051 20 H 0.060 0.940 21 H 0.060 0.940 22 H 0.074 0.926 23 H 0.196 0.804 24 H 0.134 0.866 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.063 0.937 28 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.967 1.648 -0.083 5.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.124 4.124 3 N -0.208 5.208 4 C -0.157 4.157 5 N 0.009 4.991 6 C -0.342 4.342 7 C 0.049 3.951 8 C -0.150 4.150 9 N -0.356 5.356 10 C 0.158 3.842 11 C -0.438 4.438 12 H 0.122 0.878 13 C -0.182 4.182 14 N -0.382 5.382 15 Si 0.975 3.025 16 H -0.261 1.261 17 H -0.218 1.218 18 H -0.186 1.186 19 C -0.168 4.168 20 H 0.079 0.921 21 H 0.079 0.921 22 H 0.092 0.908 23 H 0.212 0.788 24 H 0.152 0.848 25 H 0.088 0.912 26 H 0.089 0.911 27 H 0.082 0.918 28 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 5.099 0.177 -0.409 5.119 hybrid contribution 0.121 2.082 0.437 2.131 sum 5.220 2.259 0.028 5.688 Atomic orbital electron populations 1.20044 0.88109 1.01946 1.01632 1.20177 0.95828 0.87040 1.09366 1.69924 1.00202 1.30220 1.20445 1.24462 0.96545 0.80616 1.14045 1.42288 1.06724 1.06672 1.43423 1.20865 0.90950 0.88762 1.33595 1.19961 0.93159 0.90234 0.91713 1.20560 0.94306 0.98046 1.02099 1.67400 0.97572 1.34051 1.36552 1.19308 0.93401 0.83449 0.88039 1.21035 0.92399 0.95861 1.34477 0.87823 1.28120 1.02083 0.98033 0.89969 1.70643 1.01474 1.41386 1.24737 0.82119 0.71148 0.69966 0.79235 1.26059 1.21785 1.18625 1.21149 0.84351 0.96198 1.15125 0.92128 0.92132 0.90773 0.78776 0.84806 0.91247 0.91115 0.91826 0.89667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.16 9.38 36.00 0.34 -0.82 15 2 C 0.01 0.31 7.13 -82.60 -0.59 -0.28 15 3 N -0.49 -11.07 11.21 -10.49 -0.12 -11.18 15 4 C 0.12 2.51 12.85 -89.63 -1.15 1.36 15 5 N -0.32 -7.44 2.97 -60.75 -0.18 -7.62 15 6 C -0.22 -4.65 10.61 -16.15 -0.17 -4.83 15 7 C 0.18 3.95 6.71 -83.13 -0.56 3.39 15 8 C -0.09 -1.55 10.11 36.01 0.36 -1.19 15 9 N -0.63 -15.59 4.64 -6.41 -0.03 -15.62 15 10 C 0.29 7.33 6.51 -82.77 -0.54 6.79 15 11 C -0.41 -10.10 9.24 -38.17 -0.35 -10.46 15 12 H 0.10 2.47 5.23 -52.48 -0.27 2.19 15 13 C 0.04 1.10 5.52 -17.33 -0.10 1.00 15 14 N -0.76 -18.59 13.65 55.55 0.76 -17.83 15 15 Si 1.14 26.16 25.81 -169.99 -4.39 21.78 15 16 H -0.33 -7.38 7.11 56.52 0.40 -6.98 15 17 H -0.29 -6.78 7.11 56.52 0.40 -6.37 15 18 H -0.26 -5.93 6.46 56.52 0.37 -5.56 15 19 C -0.05 -1.27 6.80 -82.30 -0.56 -1.83 15 20 H 0.06 1.10 8.14 -51.93 -0.42 0.68 15 21 H 0.06 1.05 8.14 -51.93 -0.42 0.63 15 22 H 0.07 1.44 6.21 -51.93 -0.32 1.11 15 23 H 0.20 3.16 8.06 -52.49 -0.42 2.74 15 24 H 0.13 2.39 8.04 -52.48 -0.42 1.97 15 25 H 0.07 1.06 8.14 -51.93 -0.42 0.64 15 26 H 0.07 1.19 8.14 -51.93 -0.42 0.77 15 27 H 0.06 0.88 8.04 -51.93 -0.42 0.46 15 28 H 0.29 6.66 8.73 -40.82 -0.36 6.30 15 LS Contribution 240.71 15.07 3.63 3.63 Total: -1.00 -28.73 240.71 -6.38 -35.11 By element: Atomic # 1 Polarization: 1.32 SS G_CDS: -2.74 Total: -1.42 kcal Atomic # 6 Polarization: -3.53 SS G_CDS: -3.31 Total: -6.85 kcal Atomic # 7 Polarization: -52.68 SS G_CDS: 0.43 Total: -52.25 kcal Atomic # 14 Polarization: 26.16 SS G_CDS: -4.39 Total: 21.78 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -28.73 -6.38 -35.11 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089195467.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.356 kcal (2) G-P(sol) polarization free energy of solvation -28.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds