Wall clock time and date at job start Mon Mar 30 2020 02:41:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.33731 * 126.07507 * 2 1 4 4 C 1.30920 * 109.78145 * 180.02562 * 3 2 1 5 5 N 1.35474 * 108.88155 * 0.02562 * 4 3 2 6 6 C 1.36685 * 134.40121 * 179.97438 * 5 4 3 7 7 C 1.36130 * 120.65389 * 180.02562 * 6 5 4 8 8 C 1.50699 * 118.78852 * 180.02562 * 7 6 5 9 9 N 1.32334 * 122.42463 * 359.67006 * 7 6 5 10 10 C 1.33930 * 121.05411 * 0.64932 * 9 7 6 11 11 C 1.40142 * 120.72280 * 179.67282 * 10 9 7 12 12 H 1.08004 * 119.99710 * 172.14776 * 11 10 9 13 13 C 1.40092 * 120.00265 * 352.13621 * 11 10 9 14 14 N 1.30720 * 119.99701 * 173.14918 * 13 11 10 15 15 Si 1.86797 * 119.99691 * 352.88032 * 13 11 10 16 16 H 1.48509 * 109.46946 * 180.27240 * 15 13 11 17 17 H 1.48500 * 109.47243 * 300.26881 * 15 13 11 18 18 H 1.48499 * 109.47321 * 60.27461 * 15 13 11 19 19 C 1.35911 * 126.07581 * 180.02562 * 2 1 3 20 20 H 1.09004 * 109.47329 * 263.99177 * 1 2 3 21 21 H 1.08998 * 109.47745 * 23.99080 * 1 2 3 22 22 H 1.09005 * 109.47587 * 143.99385 * 1 2 3 23 23 H 1.08002 * 125.56498 * 180.02562 * 4 3 2 24 24 H 1.08005 * 119.67208 * 0.02562 * 6 5 4 25 25 H 1.09001 * 109.47415 * 89.99930 * 8 7 6 26 26 H 1.09001 * 109.47207 * 209.99677 * 8 7 6 27 27 H 1.08999 * 109.47031 * 329.99800 * 8 7 6 28 28 H 0.96996 * 120.00623 * 354.26277 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2944 1.0809 0.0000 4 6 3.5510 0.7136 -0.0006 5 7 3.6122 -0.6398 -0.0015 6 6 4.6310 -1.5511 -0.0028 7 6 4.3675 -2.8866 -0.0041 8 6 5.5228 -3.8543 -0.0049 9 7 3.1343 -3.3666 0.0024 10 6 2.0743 -2.5480 -0.0025 11 6 0.7713 -3.0639 -0.0025 12 1 -0.0721 -2.4006 0.1214 13 6 0.5626 -4.4398 -0.1634 14 7 -0.6383 -4.9386 -0.0301 15 14 1.9991 -5.5603 -0.5759 16 1 1.5162 -6.9593 -0.6989 17 1 2.6079 -5.1320 -1.8609 18 1 3.0152 -5.4806 0.5042 19 6 2.3073 -1.0985 -0.0005 20 1 -0.3634 -0.1076 1.0220 21 1 -0.3634 0.9388 -0.4178 22 1 -0.3634 -0.8313 -0.6041 23 1 4.4005 1.3806 -0.0003 24 1 5.6551 -1.2081 -0.0029 25 1 5.8013 -4.0885 1.0226 26 1 5.2299 -4.7694 -0.5195 27 1 6.3728 -3.4048 -0.5183 28 1 -1.3694 -4.3718 0.2614 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089195467.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:58 Heat of formation + Delta-G solvation = 46.600728 kcal Electronic energy + Delta-G solvation = -14364.568933 eV Core-core repulsion = 11993.870629 eV Total energy + Delta-G solvation = -2370.698304 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.37344 -39.08569 -36.52468 -34.63352 -33.23059 -31.72125 -28.87865 -28.13334 -26.75622 -23.75046 -22.60409 -21.22549 -20.60979 -18.76691 -17.53488 -16.74109 -16.45771 -16.11994 -14.99644 -14.76291 -14.69351 -14.48151 -13.92163 -13.82906 -13.44863 -13.34640 -13.11767 -12.87326 -12.34246 -12.14671 -11.68602 -11.52220 -11.27280 -11.17169 -10.02591 -9.79039 -9.33436 -8.57315 -6.98231 0.20873 0.72457 1.59313 1.67609 2.02441 2.11369 2.14079 2.44068 2.48910 3.28427 3.64111 3.81253 3.92657 3.94952 4.28408 4.48128 4.70837 4.76995 4.81782 4.85211 4.91267 4.96518 5.10904 5.19855 5.26691 5.55665 5.75387 5.85833 6.03227 6.34666 6.65227 7.03461 7.57605 7.73573 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.026576 B = 0.015470 C = 0.009911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.345515 B = 1809.468999 C = 2824.525108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.003 3.997 3 N -0.506 5.506 4 C 0.133 3.867 5 N -0.338 5.338 6 C -0.210 4.210 7 C 0.148 3.852 8 C -0.088 4.088 9 N -0.649 5.649 10 C 0.274 3.726 11 C -0.431 4.431 12 H 0.104 0.896 13 C 0.026 3.974 14 N -0.779 5.779 15 Si 1.173 2.827 16 H -0.325 1.325 17 H -0.301 1.301 18 H -0.261 1.261 19 C -0.092 4.092 20 H 0.069 0.931 21 H 0.079 0.921 22 H 0.068 0.932 23 H 0.242 0.758 24 H 0.174 0.826 25 H 0.084 0.916 26 H 0.065 0.935 27 H 0.097 0.903 28 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.852 2.578 -0.034 7.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.134 4.134 3 N -0.224 5.224 4 C -0.144 4.144 5 N -0.007 5.007 6 C -0.332 4.332 7 C 0.020 3.980 8 C -0.145 4.145 9 N -0.377 5.377 10 C 0.143 3.857 11 C -0.464 4.464 12 H 0.122 0.878 13 C -0.198 4.198 14 N -0.399 5.399 15 Si 1.004 2.996 16 H -0.258 1.258 17 H -0.229 1.229 18 H -0.187 1.187 19 C -0.208 4.208 20 H 0.087 0.913 21 H 0.098 0.902 22 H 0.087 0.913 23 H 0.258 0.742 24 H 0.192 0.808 25 H 0.103 0.897 26 H 0.084 0.916 27 H 0.116 0.884 28 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 7.000 1.104 -0.354 7.095 hybrid contribution -0.323 1.969 0.428 2.040 sum 6.677 3.073 0.074 7.351 Atomic orbital electron populations 1.20071 0.86345 1.02688 1.02234 1.20726 0.97302 0.86915 1.08456 1.69966 1.01069 1.30115 1.21257 1.25465 0.97413 0.80429 1.11043 1.42608 1.06519 1.07582 1.43945 1.21569 0.92275 0.88550 1.30816 1.20814 0.93551 0.91918 0.91747 1.20661 0.93435 0.96927 1.03525 1.67401 0.98590 1.34620 1.37103 1.19551 0.93880 0.84332 0.87912 1.21079 0.92668 0.96119 1.36568 0.87828 1.28566 1.02782 0.98592 0.89861 1.70635 1.01690 1.41593 1.25968 0.81710 0.70140 0.69366 0.78385 1.25771 1.22925 1.18713 1.21351 0.85801 0.96365 1.17274 0.91263 0.90234 0.91350 0.74170 0.80841 0.89700 0.91627 0.88411 0.89332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.14 9.38 71.23 0.67 -1.47 15 2 C 0.00 0.15 7.13 41.73 0.30 0.45 15 3 N -0.51 -21.81 11.21 -187.10 -2.10 -23.91 15 4 C 0.13 5.15 12.85 180.00 2.31 7.47 15 5 N -0.34 -14.78 2.97 -346.12 -1.03 -15.81 15 6 C -0.21 -8.30 10.61 83.45 0.89 -7.42 15 7 C 0.15 6.19 6.71 41.99 0.28 6.47 15 8 C -0.09 -2.69 10.11 71.24 0.72 -1.97 15 9 N -0.65 -31.84 4.64 -174.19 -0.81 -32.65 15 10 C 0.27 14.07 6.51 41.53 0.27 14.34 15 11 C -0.43 -21.94 9.24 23.18 0.21 -21.72 15 12 H 0.10 5.08 5.23 -2.91 -0.02 5.07 15 13 C 0.03 1.30 5.52 85.31 0.47 1.77 15 14 N -0.78 -38.43 13.65 21.85 0.30 -38.13 15 15 Si 1.17 53.49 25.81 68.60 1.77 55.27 15 16 H -0.32 -14.40 7.11 99.48 0.71 -13.69 15 17 H -0.30 -14.07 7.11 99.48 0.71 -13.36 15 18 H -0.26 -11.77 6.46 99.48 0.64 -11.13 15 19 C -0.09 -4.50 6.80 39.82 0.27 -4.23 15 20 H 0.07 2.49 8.14 -2.39 -0.02 2.47 15 21 H 0.08 2.68 8.14 -2.39 -0.02 2.66 15 22 H 0.07 2.68 6.21 -2.38 -0.01 2.66 15 23 H 0.24 6.63 8.06 -2.91 -0.02 6.60 15 24 H 0.17 5.32 8.04 -2.91 -0.02 5.29 15 25 H 0.08 2.33 8.14 -2.39 -0.02 2.31 15 26 H 0.06 2.07 8.14 -2.39 -0.02 2.05 15 27 H 0.10 2.28 8.04 -2.39 -0.02 2.26 15 28 H 0.29 13.73 8.73 -92.71 -0.81 12.92 15 Total: -1.00 -61.02 240.71 5.60 -55.42 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: 1.07 Total: 6.11 kcal Atomic # 6 Polarization: -12.69 SS G_CDS: 6.39 Total: -6.30 kcal Atomic # 7 Polarization: -106.86 SS G_CDS: -3.64 Total: -110.50 kcal Atomic # 14 Polarization: 53.49 SS G_CDS: 1.77 Total: 55.27 kcal Total: -61.02 5.60 -55.42 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089195467.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.020 kcal (2) G-P(sol) polarization free energy of solvation -61.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds