Wall clock time and date at job start Mon Mar 30 2020 02:29:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 119.99906 * 2 1 4 4 H 1.48503 * 109.47310 * 270.00020 * 3 2 1 5 5 H 1.48499 * 109.47387 * 30.00403 * 3 2 1 6 6 H 1.48499 * 109.47236 * 150.00423 * 3 2 1 7 7 C 1.37876 * 120.00197 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00354 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99688 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.46427 * 299.99481 * 9 7 2 11 11 N 1.46897 * 109.47368 * 59.99431 * 9 7 2 12 12 C 1.50700 * 109.46690 * 179.97438 * 9 7 2 13 13 N 1.31708 * 119.93410 * 285.01376 * 12 9 7 14 14 C 1.32295 * 122.23691 * 180.02562 * 13 12 9 15 15 C 1.37725 * 121.49553 * 0.02562 * 14 13 12 16 16 C 1.39315 * 118.87720 * 359.97438 * 15 14 13 17 17 N 1.37068 * 134.63412 * 180.02562 * 16 15 14 18 18 H 0.97001 * 125.03885 * 359.92737 * 17 16 15 19 19 C 1.36954 * 109.91296 * 180.20544 * 17 16 15 20 20 C 1.34272 * 109.95271 * 359.60417 * 19 17 16 21 21 C 1.39301 * 119.93228 * 104.99835 * 12 9 7 22 22 H 0.97005 * 119.99864 * 359.97438 * 1 2 3 23 23 H 1.00900 * 110.99718 * 60.00648 * 11 9 7 24 24 H 1.00897 * 110.99781 * 183.95297 * 11 9 7 25 25 H 1.07993 * 119.24727 * 180.02562 * 14 13 12 26 26 H 1.07997 * 120.55955 * 180.02562 * 15 14 13 27 27 H 1.08002 * 125.01967 * 179.77081 * 19 17 16 28 28 H 1.08003 * 126.52556 * 180.15511 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 1 0.6242 -2.5574 0.8881 11 7 0.4068 -2.5761 -1.2014 12 6 2.2304 -3.6445 -0.0027 13 7 2.8822 -3.9509 -1.1054 14 6 3.7514 -4.9469 -1.1578 15 6 4.0231 -5.7236 -0.0533 16 6 3.3638 -5.4470 1.1424 17 7 3.3828 -5.9904 2.4006 18 1 3.9287 -6.7443 2.6734 19 6 2.5119 -5.3150 3.2136 20 6 1.9177 -4.3258 2.5271 21 6 2.4446 -4.3769 1.1627 22 1 -0.4850 0.8401 0.0004 23 1 0.9651 -2.5243 -2.0403 24 1 -0.1571 -3.4128 -1.1936 25 1 4.2593 -5.1557 -2.0877 26 1 4.7359 -6.5327 -0.1130 27 1 2.3320 -5.5425 4.2539 28 1 1.1873 -3.6275 2.9083 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089220584.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:02 Heat of formation + Delta-G solvation = 45.831053 kcal Electronic energy + Delta-G solvation = -14038.406385 eV Core-core repulsion = 11667.674706 eV Total energy + Delta-G solvation = -2370.731679 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.32878 -39.06751 -36.26840 -33.69351 -32.22168 -31.35950 -29.75475 -27.97789 -25.14700 -23.44608 -22.51557 -21.22365 -19.05717 -18.47226 -17.30693 -16.60487 -16.20323 -16.02985 -15.62861 -15.31779 -14.79145 -14.35720 -14.10991 -13.67764 -13.53546 -13.18436 -12.75101 -12.70642 -12.36553 -11.82122 -11.30800 -10.60218 -10.53744 -10.25736 -9.65481 -8.93660 -8.59785 -7.95033 -6.15551 0.13141 0.73430 1.42898 1.44731 1.54125 1.81317 2.21321 2.48597 3.11970 3.28043 3.72280 3.85645 4.12015 4.21917 4.39369 4.53616 4.66687 4.73991 4.97743 5.04516 5.22892 5.45522 5.65619 5.76253 5.77340 6.07834 6.21224 6.65238 6.74310 7.11096 7.26286 7.47080 7.54186 9.08460 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.034235 B = 0.009339 C = 0.008676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.684265 B = 2997.426053 C = 3226.374269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.037 3.963 3 Si 0.950 3.050 4 H -0.278 1.278 5 H -0.277 1.277 6 H -0.275 1.275 7 C -0.533 4.533 8 H 0.033 0.967 9 C 0.275 3.725 10 H 0.024 0.976 11 N -0.810 5.810 12 C 0.158 3.842 13 N -0.531 5.531 14 C 0.081 3.919 15 C -0.194 4.194 16 C 0.111 3.889 17 N -0.575 5.575 18 H 0.435 0.565 19 C 0.070 3.930 20 C -0.219 4.219 21 C -0.194 4.194 22 H 0.257 0.743 23 H 0.327 0.673 24 H 0.304 0.696 25 H 0.178 0.822 26 H 0.165 0.835 27 H 0.223 0.777 28 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.323 -13.700 5.745 16.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.167 4.167 3 Si 0.775 3.225 4 H -0.204 1.204 5 H -0.202 1.202 6 H -0.200 1.200 7 C -0.573 4.573 8 H 0.051 0.949 9 C 0.164 3.836 10 H 0.042 0.958 11 N -0.335 5.335 12 C 0.012 3.988 13 N -0.243 5.243 14 C -0.070 4.070 15 C -0.217 4.217 16 C -0.004 4.004 17 N -0.181 5.181 18 H 0.276 0.724 19 C -0.055 4.055 20 C -0.245 4.245 21 C -0.201 4.201 22 H 0.066 0.934 23 H 0.139 0.861 24 H 0.114 0.886 25 H 0.195 0.805 26 H 0.182 0.818 27 H 0.239 0.761 28 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 6.755 -12.556 5.309 15.214 hybrid contribution 1.156 -0.547 0.452 1.356 sum 7.911 -13.103 5.761 16.354 Atomic orbital electron populations 1.70221 1.06833 1.26415 1.47988 1.25623 0.95515 1.01564 0.93964 0.85725 0.78633 0.79999 0.78101 1.20355 1.20192 1.20047 1.20901 0.91404 0.91098 1.53860 0.94917 1.17781 0.86991 0.88508 0.90276 0.95811 1.59115 1.27990 1.41868 1.04513 1.22637 0.94310 0.94444 0.87423 1.67415 1.09768 1.18089 1.28979 1.22891 0.94560 0.90559 0.98986 1.21175 1.04951 1.05241 0.90376 1.18541 0.98332 0.95187 0.88366 1.41602 1.38701 1.31173 1.06594 0.72419 1.22451 0.92166 0.93090 0.97817 1.21893 1.06929 1.03697 0.91976 1.20462 1.03073 0.99880 0.96727 0.93413 0.86134 0.88600 0.80517 0.81796 0.76074 0.84380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -53.48 12.77 21.45 0.27 -53.20 15 2 C 0.04 2.16 5.39 84.65 0.46 2.62 15 3 Si 0.95 46.18 29.54 68.60 2.03 48.20 15 4 H -0.28 -13.29 7.11 99.48 0.71 -12.58 15 5 H -0.28 -12.87 7.11 99.48 0.71 -12.16 15 6 H -0.28 -13.20 7.11 99.48 0.71 -12.49 15 7 C -0.53 -31.95 8.71 25.60 0.22 -31.73 15 8 H 0.03 2.02 7.74 -2.92 -0.02 2.00 15 9 C 0.28 15.11 2.93 43.43 0.13 15.23 15 10 H 0.02 1.42 7.50 -2.39 -0.02 1.40 15 11 N -0.81 -42.73 8.49 -174.95 -1.49 -44.22 15 12 C 0.16 7.59 5.69 42.83 0.24 7.84 15 13 N -0.53 -23.83 9.71 -183.25 -1.78 -25.61 15 14 C 0.08 2.79 11.14 84.50 0.94 3.73 15 15 C -0.19 -5.69 10.14 22.41 0.23 -5.46 15 16 C 0.11 3.61 7.34 39.28 0.29 3.90 15 17 N -0.57 -13.01 6.05 -187.47 -1.13 -14.15 15 18 H 0.44 5.76 8.96 -92.71 -0.83 4.93 15 19 C 0.07 1.65 11.82 82.99 0.98 2.63 15 20 C -0.22 -7.73 10.61 23.48 0.25 -7.49 15 21 C -0.19 -8.07 6.16 -20.21 -0.12 -8.19 15 22 H 0.26 14.80 8.31 -92.70 -0.77 14.03 15 23 H 0.33 17.21 8.55 -89.69 -0.77 16.44 15 24 H 0.30 14.58 9.06 -89.70 -0.81 13.77 15 25 H 0.18 4.72 8.06 -2.91 -0.02 4.70 15 26 H 0.16 3.22 8.06 -2.91 -0.02 3.19 15 27 H 0.22 2.74 8.06 -2.91 -0.02 2.72 15 28 H 0.14 5.06 7.95 -2.91 -0.02 5.04 15 Total: -1.00 -75.23 250.05 0.32 -74.91 By element: Atomic # 1 Polarization: 32.17 SS G_CDS: -1.19 Total: 30.98 kcal Atomic # 6 Polarization: -20.52 SS G_CDS: 3.61 Total: -16.91 kcal Atomic # 7 Polarization: -133.05 SS G_CDS: -4.12 Total: -137.18 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.20 kcal Total: -75.23 0.32 -74.91 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089220584.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.737 kcal (2) G-P(sol) polarization free energy of solvation -75.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds