Wall clock time and date at job start Mon Mar 30 2020 02:23:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99951 * 2 1 4 4 H 1.48498 * 109.47171 * 270.00567 * 3 2 1 5 5 H 1.48500 * 109.46632 * 30.00818 * 3 2 1 6 6 H 1.48494 * 109.47053 * 150.00254 * 3 2 1 7 7 C 1.37877 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00248 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 11 11 N 1.46896 * 109.46997 * 300.00267 * 9 7 2 12 12 C 1.50701 * 109.47064 * 180.02562 * 9 7 2 13 13 C 1.38675 * 119.35990 * 124.99978 * 12 9 7 14 14 C 1.38311 * 119.67599 * 179.97438 * 13 12 9 15 15 C 1.39189 * 118.28530 * 0.02562 * 14 13 12 16 16 N 1.37624 * 133.71568 * 179.97438 * 15 14 13 17 17 H 0.96998 * 125.10012 * 0.02562 * 16 15 14 18 18 C 1.36636 * 109.80873 * 180.02562 * 16 15 14 19 19 C 1.34366 * 109.94645 * 359.97438 * 18 16 15 20 20 C 1.40761 * 118.95157 * 359.97438 * 15 14 13 21 21 N 1.31527 * 119.36123 * 304.72818 * 12 9 7 22 22 H 0.97000 * 120.00333 * 359.97438 * 1 2 3 23 23 H 1.00907 * 110.99811 * 176.04301 * 11 9 7 24 24 H 1.00900 * 111.00550 * 300.00040 * 11 9 7 25 25 H 1.08003 * 120.16553 * 0.02562 * 13 12 9 26 26 H 1.07998 * 120.85464 * 179.97438 * 14 13 12 27 27 H 1.07999 * 125.02954 * 180.02562 * 18 16 15 28 28 H 1.08001 * 126.46163 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6241 -2.5568 -0.8903 11 7 0.4070 -2.5772 1.1992 12 6 2.2304 -3.6446 -0.0005 13 6 2.1454 -4.6119 0.9895 14 6 3.0405 -5.6662 0.9955 15 6 4.0063 -5.7172 -0.0056 16 7 5.0261 -6.5933 -0.2995 17 1 5.2397 -7.3913 0.2087 18 6 5.6928 -6.1704 -1.4147 19 6 5.1433 -5.0334 -1.8737 20 6 4.0333 -4.7004 -0.9786 21 7 3.1458 -3.7104 -0.9427 22 1 -0.4850 0.8400 0.0004 23 1 -0.1570 -3.4139 1.1906 24 1 0.9652 -2.5260 2.0381 25 1 1.3833 -4.5427 1.7518 26 1 2.9918 -6.4298 1.7576 27 1 6.5362 -6.6756 -1.8616 28 1 5.4603 -4.4712 -2.7396 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089220999.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:55 Heat of formation + Delta-G solvation = 78.590453 kcal Electronic energy + Delta-G solvation = -13858.974012 eV Core-core repulsion = 11489.662886 eV Total energy + Delta-G solvation = -2369.311125 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.04670 -37.76800 -34.07346 -32.32330 -31.37839 -29.52207 -28.18693 -25.99273 -23.40932 -22.30995 -20.67738 -19.96528 -17.81222 -16.34743 -16.15422 -15.17495 -14.62402 -14.39499 -14.16409 -13.96074 -13.14576 -12.76836 -12.24450 -12.12947 -12.07771 -11.80924 -11.03455 -10.70258 -10.56166 -9.88457 -9.73320 -9.12928 -8.54863 -8.31749 -7.83960 -7.58226 -7.12345 -5.75416 -3.86459 1.45687 2.00709 2.92547 3.26934 3.44513 3.49973 3.54546 4.52886 4.67557 4.72311 5.03342 5.28424 5.44027 5.47477 5.59954 5.72553 6.01681 6.21680 6.26924 6.36305 6.67263 6.81856 6.92547 7.47076 7.50658 7.65193 8.06603 8.27251 8.59227 9.00567 9.04380 9.24451 9.79559 11.29741 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.040698 B = 0.008312 C = 0.007251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.834826 B = 3367.974639 C = 3860.395814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.853 5.853 2 C 0.080 3.920 3 Si 0.887 3.113 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.511 4.511 8 H 0.056 0.944 9 C 0.267 3.733 10 H 0.059 0.941 11 N -0.806 5.806 12 C 0.131 3.869 13 C -0.168 4.168 14 C -0.091 4.091 15 C 0.017 3.983 16 N -0.598 5.598 17 H 0.410 0.590 18 C 0.054 3.946 19 C -0.193 4.193 20 C 0.093 3.907 21 N -0.434 5.434 22 H 0.254 0.746 23 H 0.299 0.701 24 H 0.320 0.680 25 H 0.133 0.867 26 H 0.121 0.879 27 H 0.171 0.829 28 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.169 -13.502 0.933 15.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C -0.126 4.126 3 Si 0.714 3.286 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.202 1.202 7 C -0.551 4.551 8 H 0.074 0.926 9 C 0.156 3.844 10 H 0.076 0.924 11 N -0.333 5.333 12 C -0.019 4.019 13 C -0.189 4.189 14 C -0.120 4.120 15 C -0.090 4.090 16 N -0.203 5.203 17 H 0.247 0.753 18 C -0.074 4.074 19 C -0.219 4.219 20 C -0.040 4.040 21 N -0.143 5.143 22 H 0.064 0.936 23 H 0.110 0.890 24 H 0.133 0.867 25 H 0.151 0.849 26 H 0.139 0.861 27 H 0.188 0.812 28 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 7.751 -12.159 0.036 14.419 hybrid contribution 1.216 -1.093 1.165 2.007 sum 8.967 -13.252 1.201 16.045 Atomic orbital electron populations 1.70103 1.05595 1.25535 1.47591 1.24936 0.94654 0.98508 0.94471 0.86713 0.79886 0.83983 0.77969 1.20764 1.21450 1.20166 1.20750 0.92299 0.88912 1.53093 0.92593 1.18110 0.86937 0.88454 0.90890 0.92351 1.59247 1.27811 1.41887 1.04393 1.23488 0.94327 0.95849 0.88222 1.21835 1.00386 0.95240 1.01429 1.20323 0.94790 0.99698 0.97218 1.19096 0.94474 0.94845 1.00606 1.41467 1.28264 1.24154 1.26374 0.75345 1.21748 0.98890 0.97232 0.89555 1.21544 0.98535 0.98916 1.02936 1.20335 0.96896 0.91706 0.95074 1.67174 1.02098 1.20523 1.24464 0.93596 0.88984 0.86734 0.84927 0.86123 0.81196 0.83332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -25.30 12.77 55.43 0.71 -24.60 15 2 C 0.08 2.30 5.39 -17.82 -0.10 2.21 15 3 Si 0.89 22.22 29.54 -169.99 -5.02 17.19 15 4 H -0.28 -7.02 7.11 56.52 0.40 -6.62 15 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 15 6 H -0.28 -6.91 7.11 56.52 0.40 -6.51 15 7 C -0.51 -14.69 8.52 -34.44 -0.29 -14.98 15 8 H 0.06 1.67 7.68 -52.49 -0.40 1.26 15 9 C 0.27 6.88 3.09 -70.02 -0.22 6.66 15 10 H 0.06 1.68 8.14 -51.93 -0.42 1.25 15 11 N -0.81 -18.70 7.83 -6.65 -0.05 -18.75 15 12 C 0.13 3.00 6.11 -82.56 -0.50 2.49 15 13 C -0.17 -3.13 9.04 -39.39 -0.36 -3.49 15 14 C -0.09 -1.49 10.19 -39.20 -0.40 -1.88 15 15 C 0.02 0.29 7.29 -83.96 -0.61 -0.32 15 16 N -0.60 -7.41 6.06 -10.64 -0.06 -7.47 15 17 H 0.41 3.48 8.96 -40.82 -0.37 3.12 15 18 C 0.05 0.64 11.81 -16.78 -0.20 0.44 15 19 C -0.19 -3.06 11.08 -37.66 -0.42 -3.48 15 20 C 0.09 1.88 7.52 -83.11 -0.62 1.26 15 21 N -0.43 -10.28 10.01 -6.12 -0.06 -10.34 15 22 H 0.25 7.22 8.31 -40.82 -0.34 6.88 15 23 H 0.30 5.98 8.07 -39.29 -0.32 5.67 15 24 H 0.32 7.05 8.25 -39.29 -0.32 6.72 15 25 H 0.13 2.17 6.15 -52.48 -0.32 1.85 15 26 H 0.12 1.50 8.06 -52.49 -0.42 1.08 15 27 H 0.17 1.21 8.06 -52.49 -0.42 0.78 15 28 H 0.15 2.13 8.06 -52.49 -0.42 1.71 15 LS Contribution 247.30 15.07 3.73 3.73 Total: -1.00 -33.83 247.30 -7.04 -40.88 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -2.56 Total: 10.47 kcal Atomic # 6 Polarization: -7.38 SS G_CDS: -3.72 Total: -11.10 kcal Atomic # 7 Polarization: -61.69 SS G_CDS: 0.53 Total: -61.16 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -33.83 -7.04 -40.88 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089220999.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.466 kcal (2) G-P(sol) polarization free energy of solvation -33.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds