Wall clock time and date at job start Mon Mar 30 2020 02:23:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99951 * 2 1 4 4 H 1.48498 * 109.47171 * 270.00567 * 3 2 1 5 5 H 1.48500 * 109.46632 * 30.00818 * 3 2 1 6 6 H 1.48494 * 109.47053 * 150.00254 * 3 2 1 7 7 C 1.37877 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00248 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 11 11 N 1.46896 * 109.46997 * 300.00267 * 9 7 2 12 12 C 1.50701 * 109.47064 * 180.02562 * 9 7 2 13 13 C 1.38675 * 119.35990 * 124.99978 * 12 9 7 14 14 C 1.38311 * 119.67599 * 179.97438 * 13 12 9 15 15 C 1.39189 * 118.28530 * 0.02562 * 14 13 12 16 16 N 1.37624 * 133.71568 * 179.97438 * 15 14 13 17 17 H 0.96998 * 125.10012 * 0.02562 * 16 15 14 18 18 C 1.36636 * 109.80873 * 180.02562 * 16 15 14 19 19 C 1.34366 * 109.94645 * 359.97438 * 18 16 15 20 20 C 1.40761 * 118.95157 * 359.97438 * 15 14 13 21 21 N 1.31527 * 119.36123 * 304.72818 * 12 9 7 22 22 H 0.97000 * 120.00333 * 359.97438 * 1 2 3 23 23 H 1.00907 * 110.99811 * 176.04301 * 11 9 7 24 24 H 1.00900 * 111.00550 * 300.00040 * 11 9 7 25 25 H 1.08003 * 120.16553 * 0.02562 * 13 12 9 26 26 H 1.07998 * 120.85464 * 179.97438 * 14 13 12 27 27 H 1.07999 * 125.02954 * 180.02562 * 18 16 15 28 28 H 1.08001 * 126.46163 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6241 -2.5568 -0.8903 11 7 0.4070 -2.5772 1.1992 12 6 2.2304 -3.6446 -0.0005 13 6 2.1454 -4.6119 0.9895 14 6 3.0405 -5.6662 0.9955 15 6 4.0063 -5.7172 -0.0056 16 7 5.0261 -6.5933 -0.2995 17 1 5.2397 -7.3913 0.2087 18 6 5.6928 -6.1704 -1.4147 19 6 5.1433 -5.0334 -1.8737 20 6 4.0333 -4.7004 -0.9786 21 7 3.1458 -3.7104 -0.9427 22 1 -0.4850 0.8400 0.0004 23 1 -0.1570 -3.4139 1.1906 24 1 0.9652 -2.5260 2.0381 25 1 1.3833 -4.5427 1.7518 26 1 2.9918 -6.4298 1.7576 27 1 6.5362 -6.6756 -1.8616 28 1 5.4603 -4.4712 -2.7396 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089220999.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:55 Heat of formation + Delta-G solvation = 51.904402 kcal Electronic energy + Delta-G solvation = -13860.131206 eV Core-core repulsion = 11489.662886 eV Total energy + Delta-G solvation = -2370.468319 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.31429 -39.21922 -35.94525 -33.79335 -33.34513 -30.80067 -29.59757 -28.04021 -25.08016 -23.75760 -22.10307 -21.36990 -19.04426 -18.46515 -17.44202 -16.90627 -16.43357 -15.87776 -15.69436 -15.62535 -14.47879 -14.11020 -13.87045 -13.72231 -13.57058 -13.34531 -12.91868 -12.67446 -12.50743 -11.81334 -11.24137 -11.19285 -10.53218 -10.07689 -9.14919 -8.95008 -8.92145 -7.94467 -6.13011 0.18128 0.53226 1.42763 1.44078 1.54094 1.78153 2.20889 2.49375 3.09884 3.27775 3.51351 3.85721 4.09335 4.15214 4.30176 4.43339 4.62803 4.74807 4.86350 5.10260 5.22960 5.41743 5.55605 5.63459 5.80136 6.10559 6.23421 6.63526 6.74100 7.07223 7.27038 7.47374 7.58006 9.09224 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.040698 B = 0.008312 C = 0.007251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.834826 B = 3367.974639 C = 3860.395814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.033 3.967 3 Si 0.949 3.051 4 H -0.279 1.279 5 H -0.278 1.278 6 H -0.276 1.276 7 C -0.526 4.526 8 H 0.035 0.965 9 C 0.274 3.726 10 H 0.012 0.988 11 N -0.811 5.811 12 C 0.098 3.902 13 C -0.179 4.179 14 C -0.074 4.074 15 C 0.014 3.986 16 N -0.575 5.575 17 H 0.436 0.564 18 C 0.105 3.895 19 C -0.244 4.244 20 C 0.051 3.949 21 N -0.488 5.488 22 H 0.256 0.744 23 H 0.318 0.682 24 H 0.328 0.672 25 H 0.151 0.849 26 H 0.170 0.830 27 H 0.232 0.768 28 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.298 -15.916 1.902 19.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.170 4.170 3 Si 0.775 3.225 4 H -0.205 1.205 5 H -0.203 1.203 6 H -0.201 1.201 7 C -0.565 4.565 8 H 0.053 0.947 9 C 0.163 3.837 10 H 0.029 0.971 11 N -0.340 5.340 12 C -0.051 4.051 13 C -0.200 4.200 14 C -0.103 4.103 15 C -0.094 4.094 16 N -0.181 5.181 17 H 0.277 0.723 18 C -0.024 4.024 19 C -0.270 4.270 20 C -0.083 4.083 21 N -0.198 5.198 22 H 0.065 0.935 23 H 0.130 0.870 24 H 0.141 0.859 25 H 0.169 0.831 26 H 0.187 0.813 27 H 0.248 0.752 28 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 9.888 -14.612 1.026 17.673 hybrid contribution 0.693 -0.523 0.792 1.175 sum 10.581 -15.134 1.817 18.555 Atomic orbital electron populations 1.70212 1.06755 1.26318 1.48454 1.25639 0.95533 1.01607 0.94187 0.85730 0.78631 0.80137 0.77976 1.20502 1.20289 1.20118 1.20932 0.91526 0.90967 1.53109 0.94688 1.17608 0.87083 0.89107 0.89939 0.97084 1.58958 1.27923 1.43310 1.03767 1.22970 0.94882 0.96658 0.90590 1.21869 1.01936 0.95278 1.00912 1.20740 0.92857 0.99273 0.97388 1.19181 0.95491 0.94903 0.99869 1.41522 1.26380 1.23943 1.26297 0.72336 1.22570 0.97867 0.94713 0.87265 1.21827 0.99278 1.01679 1.04224 1.21010 0.97557 0.92162 0.97548 1.66948 1.03735 1.23237 1.25868 0.93510 0.86960 0.85912 0.83129 0.81271 0.75172 0.83194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -53.87 12.77 21.45 0.27 -53.60 15 2 C 0.03 1.97 5.39 84.65 0.46 2.43 15 3 Si 0.95 46.90 29.54 68.60 2.03 48.93 15 4 H -0.28 -13.57 7.11 99.48 0.71 -12.87 15 5 H -0.28 -13.13 7.11 99.48 0.71 -12.43 15 6 H -0.28 -13.49 7.11 99.48 0.71 -12.78 15 7 C -0.53 -31.76 8.52 25.60 0.22 -31.54 15 8 H 0.03 2.20 7.68 -2.91 -0.02 2.18 15 9 C 0.27 14.95 3.09 43.43 0.13 15.08 15 10 H 0.01 0.71 8.14 -2.39 -0.02 0.69 15 11 N -0.81 -38.83 7.83 -174.95 -1.37 -40.20 15 12 C 0.10 4.70 6.11 42.71 0.26 4.96 15 13 C -0.18 -6.62 9.04 22.39 0.20 -6.41 15 14 C -0.07 -2.20 10.19 22.52 0.23 -1.97 15 15 C 0.01 0.45 7.29 39.08 0.28 0.74 15 16 N -0.58 -11.45 6.06 -187.59 -1.14 -12.59 15 17 H 0.44 4.68 8.96 -92.71 -0.83 3.85 15 18 C 0.11 1.99 11.81 83.06 0.98 2.97 15 19 C -0.24 -7.44 11.08 23.52 0.26 -7.18 15 20 C 0.05 2.05 7.52 41.72 0.31 2.37 15 21 N -0.49 -24.33 10.01 -173.28 -1.73 -26.06 15 22 H 0.26 14.84 8.31 -92.71 -0.77 14.07 15 23 H 0.32 13.02 8.07 -89.69 -0.72 12.29 15 24 H 0.33 14.72 8.25 -89.69 -0.74 13.98 15 25 H 0.15 4.80 6.15 -2.91 -0.02 4.79 15 26 H 0.17 3.32 8.06 -2.91 -0.02 3.30 15 27 H 0.23 1.57 8.06 -2.91 -0.02 1.54 15 28 H 0.15 4.31 8.06 -2.91 -0.02 4.29 15 Total: -1.00 -79.50 247.30 0.33 -79.18 By element: Atomic # 1 Polarization: 23.98 SS G_CDS: -1.07 Total: 22.91 kcal Atomic # 6 Polarization: -21.90 SS G_CDS: 3.34 Total: -18.56 kcal Atomic # 7 Polarization: -128.48 SS G_CDS: -3.97 Total: -132.45 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 2.03 Total: 48.93 kcal Total: -79.50 0.33 -79.18 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089220999.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.081 kcal (2) G-P(sol) polarization free energy of solvation -79.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds