Wall clock time and date at job start Mon Mar 30 2020 02:29:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99569 * 2 1 4 4 H 1.48504 * 109.47046 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47351 * 299.99897 * 3 2 1 6 6 H 1.48504 * 109.47243 * 60.00306 * 3 2 1 7 7 C 1.37873 * 120.00218 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00373 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00048 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.46694 * 299.99829 * 9 7 2 11 11 N 1.46900 * 109.47128 * 59.99669 * 9 7 2 12 12 C 1.50694 * 109.47008 * 179.97438 * 9 7 2 13 13 C 1.38676 * 120.16493 * 280.01830 * 12 9 7 14 14 N 1.31530 * 121.27828 * 179.97438 * 13 12 9 15 15 C 1.32997 * 121.40292 * 0.02562 * 14 13 12 16 16 C 1.46428 * 133.75896 * 180.02562 * 15 14 13 17 17 C 1.34354 * 107.07994 * 179.97438 * 16 15 14 18 18 N 1.36638 * 109.94591 * 359.77240 * 17 16 15 19 19 H 0.96998 * 125.09711 * 180.29501 * 18 17 16 20 20 C 1.37624 * 109.80699 * 0.38419 * 18 17 16 21 21 C 1.38306 * 120.16290 * 100.00073 * 12 9 7 22 22 H 0.97000 * 120.00075 * 359.97438 * 1 2 3 23 23 H 1.00903 * 110.99989 * 296.04278 * 11 9 7 24 24 H 1.00892 * 111.00163 * 60.00059 * 11 9 7 25 25 H 1.07999 * 119.36187 * 0.02562 * 13 12 9 26 26 H 1.08001 * 126.45751 * 359.94489 * 16 15 14 27 27 H 1.08000 * 125.03035 * 180.02562 * 17 16 15 28 28 H 1.07997 * 120.85899 * 0.03938 * 21 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6242 -2.5567 0.8903 11 7 0.4070 -2.5772 -1.1992 12 6 2.2305 -3.6445 0.0005 13 6 2.8419 -4.0385 -1.1802 14 7 3.7002 -5.0348 -1.2052 15 6 4.0166 -5.7050 -0.1008 16 6 4.9129 -6.8282 0.1804 17 6 4.8250 -7.0831 1.4966 18 7 3.9500 -6.2124 2.0827 19 1 3.7252 -6.1982 3.0261 20 6 3.4341 -5.3601 1.1333 21 6 2.5243 -4.3076 1.1782 22 1 -0.4850 0.8400 0.0004 23 1 -0.3004 -1.8578 -1.1910 24 1 0.9652 -2.5260 -2.0380 25 1 2.6093 -3.5168 -2.0967 26 1 5.5282 -7.3531 -0.5353 27 1 5.3688 -7.8586 2.0156 28 1 2.0591 -4.0170 2.1084 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089221493.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:34 Heat of formation + Delta-G solvation = 61.933730 kcal Electronic energy + Delta-G solvation = -13828.212313 eV Core-core repulsion = 11458.178898 eV Total energy + Delta-G solvation = -2370.033415 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.97633 -37.62028 -34.70716 -32.19724 -31.00980 -29.50668 -28.28542 -25.90812 -23.12581 -22.93166 -20.43661 -20.07625 -17.53874 -16.54363 -16.01217 -15.69893 -14.68550 -14.38563 -14.01621 -13.60474 -13.01685 -12.90684 -12.30343 -12.08051 -11.94918 -11.47428 -11.27888 -10.95168 -10.84510 -10.11414 -10.02672 -9.51493 -8.78886 -8.52412 -7.76735 -7.61615 -7.21078 -6.13611 -4.31066 1.62164 2.06663 3.02338 3.19245 3.28397 3.33718 3.36731 4.28720 4.65533 4.73262 5.08510 5.19494 5.43473 5.59309 5.71665 5.86244 6.19295 6.28659 6.42795 6.59407 6.88961 6.90585 6.99595 7.54524 7.61867 7.70201 7.73971 8.02861 8.60317 8.74326 8.88051 9.07454 9.41418 10.83576 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.046258 B = 0.007518 C = 0.007286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.150629 B = 3723.358438 C = 3841.811757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.067 3.933 3 Si 0.898 3.102 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.545 4.545 8 H 0.057 0.943 9 C 0.246 3.754 10 H 0.049 0.951 11 N -0.850 5.850 12 C -0.051 4.051 13 C 0.107 3.893 14 N -0.460 5.460 15 C 0.063 3.937 16 C -0.192 4.192 17 C 0.049 3.951 18 N -0.596 5.596 19 H 0.412 0.588 20 C 0.049 3.951 21 C -0.102 4.102 22 H 0.266 0.734 23 H 0.358 0.642 24 H 0.313 0.687 25 H 0.154 0.846 26 H 0.146 0.854 27 H 0.170 0.830 28 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.948 -9.475 3.565 11.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.135 4.135 3 Si 0.725 3.275 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.209 1.209 7 C -0.585 4.585 8 H 0.075 0.925 9 C 0.135 3.865 10 H 0.066 0.934 11 N -0.380 5.380 12 C -0.055 4.055 13 C -0.060 4.060 14 N -0.168 5.168 15 C -0.069 4.069 16 C -0.219 4.219 17 C -0.079 4.079 18 N -0.201 5.201 19 H 0.249 0.751 20 C -0.059 4.059 21 C -0.132 4.132 22 H 0.076 0.924 23 H 0.174 0.826 24 H 0.123 0.877 25 H 0.171 0.829 26 H 0.163 0.837 27 H 0.187 0.813 28 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 5.989 -10.393 3.181 12.410 hybrid contribution 0.366 2.234 1.180 2.553 sum 6.355 -8.159 4.361 11.223 Atomic orbital electron populations 1.69750 1.05850 1.27231 1.50309 1.25010 0.94944 0.99344 0.94224 0.86444 0.80195 0.83126 0.77711 1.19695 1.20815 1.20880 1.21839 0.93742 0.90848 1.52026 0.92463 1.17922 0.88764 0.87689 0.92076 0.93356 1.59514 1.18426 1.56211 1.03857 1.21178 0.96690 0.95616 0.92025 1.22414 0.92462 0.92903 0.98225 1.67081 1.13806 1.06782 1.29158 1.19953 1.00142 0.98652 0.88163 1.21419 1.05087 1.00435 0.94947 1.21702 0.96162 0.96425 0.93636 1.41538 1.39410 1.29635 1.09492 0.75124 1.19131 1.00354 0.95947 0.90513 1.20312 0.98669 0.94677 0.99521 0.92424 0.82596 0.87730 0.82905 0.83670 0.81324 0.85700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.03 11.54 55.43 0.64 -23.39 15 2 C 0.07 1.78 5.38 -17.82 -0.10 1.68 15 3 Si 0.90 20.69 29.54 -169.99 -5.02 15.67 15 4 H -0.27 -6.33 7.11 56.52 0.40 -5.92 15 5 H -0.28 -6.46 7.11 56.52 0.40 -6.05 15 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 15 7 C -0.54 -14.39 8.71 -34.44 -0.30 -14.69 15 8 H 0.06 1.55 7.74 -52.49 -0.41 1.15 15 9 C 0.25 6.02 2.96 -70.02 -0.21 5.82 15 10 H 0.05 1.28 8.03 -51.93 -0.42 0.86 15 11 N -0.85 -19.90 9.02 -6.65 -0.06 -19.96 15 12 C -0.05 -1.13 4.91 -104.44 -0.51 -1.65 15 13 C 0.11 2.30 10.44 -17.52 -0.18 2.12 15 14 N -0.46 -9.77 10.42 -9.86 -0.10 -9.87 15 15 C 0.06 1.23 7.52 -83.11 -0.62 0.60 15 16 C -0.19 -2.91 11.08 -37.66 -0.42 -3.33 15 17 C 0.05 0.58 11.81 -16.78 -0.20 0.39 15 18 N -0.60 -8.04 6.06 -10.65 -0.06 -8.11 15 19 H 0.41 4.13 8.96 -40.82 -0.37 3.76 15 20 C 0.05 0.89 7.29 -83.96 -0.61 0.27 15 21 C -0.10 -2.04 9.82 -39.20 -0.38 -2.42 15 22 H 0.27 6.83 8.31 -40.82 -0.34 6.49 15 23 H 0.36 8.91 7.08 -39.29 -0.28 8.63 15 24 H 0.31 6.92 7.34 -39.30 -0.29 6.63 15 25 H 0.15 3.11 6.64 -52.49 -0.35 2.76 15 26 H 0.15 1.88 8.06 -52.49 -0.42 1.46 15 27 H 0.17 1.23 8.06 -52.49 -0.42 0.81 15 28 H 0.13 2.28 8.06 -52.49 -0.42 1.85 15 LS Contribution 246.06 15.07 3.71 3.71 Total: -1.00 -29.88 246.06 -6.94 -36.83 By element: Atomic # 1 Polarization: 18.84 SS G_CDS: -2.51 Total: 16.33 kcal Atomic # 6 Polarization: -7.68 SS G_CDS: -3.53 Total: -11.22 kcal Atomic # 7 Polarization: -61.74 SS G_CDS: 0.41 Total: -61.32 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -29.88 -6.94 -36.83 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089221493.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.760 kcal (2) G-P(sol) polarization free energy of solvation -29.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds