Wall clock time and date at job start Mon Mar 30 2020 02:29:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99569 * 2 1 4 4 H 1.48504 * 109.47046 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47351 * 299.99897 * 3 2 1 6 6 H 1.48504 * 109.47243 * 60.00306 * 3 2 1 7 7 C 1.37873 * 120.00218 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00373 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00048 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.46694 * 299.99829 * 9 7 2 11 11 N 1.46900 * 109.47128 * 59.99669 * 9 7 2 12 12 C 1.50694 * 109.47008 * 179.97438 * 9 7 2 13 13 C 1.38676 * 120.16493 * 280.01830 * 12 9 7 14 14 N 1.31530 * 121.27828 * 179.97438 * 13 12 9 15 15 C 1.32997 * 121.40292 * 0.02562 * 14 13 12 16 16 C 1.46428 * 133.75896 * 180.02562 * 15 14 13 17 17 C 1.34354 * 107.07994 * 179.97438 * 16 15 14 18 18 N 1.36638 * 109.94591 * 359.77240 * 17 16 15 19 19 H 0.96998 * 125.09711 * 180.29501 * 18 17 16 20 20 C 1.37624 * 109.80699 * 0.38419 * 18 17 16 21 21 C 1.38306 * 120.16290 * 100.00073 * 12 9 7 22 22 H 0.97000 * 120.00075 * 359.97438 * 1 2 3 23 23 H 1.00903 * 110.99989 * 296.04278 * 11 9 7 24 24 H 1.00892 * 111.00163 * 60.00059 * 11 9 7 25 25 H 1.07999 * 119.36187 * 0.02562 * 13 12 9 26 26 H 1.08001 * 126.45751 * 359.94489 * 16 15 14 27 27 H 1.08000 * 125.03035 * 180.02562 * 17 16 15 28 28 H 1.07997 * 120.85899 * 0.03938 * 21 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6242 -2.5567 0.8903 11 7 0.4070 -2.5772 -1.1992 12 6 2.2305 -3.6445 0.0005 13 6 2.8419 -4.0385 -1.1802 14 7 3.7002 -5.0348 -1.2052 15 6 4.0166 -5.7050 -0.1008 16 6 4.9129 -6.8282 0.1804 17 6 4.8250 -7.0831 1.4966 18 7 3.9500 -6.2124 2.0827 19 1 3.7252 -6.1982 3.0261 20 6 3.4341 -5.3601 1.1333 21 6 2.5243 -4.3076 1.1782 22 1 -0.4850 0.8400 0.0004 23 1 -0.3004 -1.8578 -1.1910 24 1 0.9652 -2.5260 -2.0380 25 1 2.6093 -3.5168 -2.0967 26 1 5.5282 -7.3531 -0.5353 27 1 5.3688 -7.8586 2.0156 28 1 2.0591 -4.0170 2.1084 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089221493.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:33 Heat of formation + Delta-G solvation = 39.922937 kcal Electronic energy + Delta-G solvation = -13829.166773 eV Core-core repulsion = 11458.178898 eV Total energy + Delta-G solvation = -2370.987875 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.30652 -39.09952 -36.52113 -33.92485 -32.71984 -30.81459 -29.79518 -27.86733 -24.69079 -24.53974 -21.86768 -21.45931 -18.94510 -18.42140 -17.49490 -17.33975 -16.51489 -15.74345 -15.60908 -15.15121 -14.80521 -14.21197 -13.74352 -13.61721 -13.51817 -13.11031 -13.05491 -12.84293 -12.64746 -11.99386 -11.92822 -11.01102 -10.72724 -10.16379 -9.28308 -9.16009 -8.85205 -8.12508 -6.39451 0.19621 0.54129 1.36006 1.39819 1.50630 1.82616 2.21962 2.36877 3.02869 3.11115 3.46515 3.87725 4.09710 4.24092 4.30135 4.60150 4.63256 4.81442 4.85601 5.11612 5.17682 5.54983 5.62560 5.67527 5.77708 6.00657 6.14804 6.60858 6.72682 6.89972 7.09895 7.21508 7.37653 8.81090 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.046258 B = 0.007518 C = 0.007286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.150629 B = 3723.358438 C = 3841.811757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.027 3.973 3 Si 0.959 3.041 4 H -0.276 1.276 5 H -0.276 1.276 6 H -0.278 1.278 7 C -0.559 4.559 8 H 0.043 0.957 9 C 0.254 3.746 10 H 0.020 0.980 11 N -0.843 5.843 12 C -0.083 4.083 13 C 0.093 3.907 14 N -0.479 5.479 15 C 0.039 3.961 16 C -0.227 4.227 17 C 0.095 3.905 18 N -0.581 5.581 19 H 0.432 0.568 20 C 0.038 3.962 21 C -0.103 4.103 22 H 0.269 0.731 23 H 0.348 0.652 24 H 0.319 0.681 25 H 0.151 0.849 26 H 0.164 0.836 27 H 0.232 0.768 28 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.596 -10.939 4.954 14.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.174 4.174 3 Si 0.785 3.215 4 H -0.201 1.201 5 H -0.202 1.202 6 H -0.203 1.203 7 C -0.598 4.598 8 H 0.061 0.939 9 C 0.143 3.857 10 H 0.038 0.962 11 N -0.372 5.372 12 C -0.087 4.087 13 C -0.074 4.074 14 N -0.188 5.188 15 C -0.094 4.094 16 C -0.253 4.253 17 C -0.033 4.033 18 N -0.187 5.187 19 H 0.272 0.728 20 C -0.071 4.071 21 C -0.133 4.133 22 H 0.078 0.922 23 H 0.163 0.837 24 H 0.130 0.870 25 H 0.168 0.832 26 H 0.182 0.818 27 H 0.248 0.752 28 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 7.633 -11.865 4.587 14.836 hybrid contribution -0.067 2.515 0.847 2.655 sum 7.566 -9.350 5.434 13.198 Atomic orbital electron populations 1.69835 1.06799 1.28054 1.50511 1.25683 0.95731 1.02132 0.93851 0.85502 0.78641 0.79508 0.77898 1.20083 1.20161 1.20346 1.21987 0.93153 0.92259 1.52427 0.93864 1.17675 0.88622 0.88315 0.91052 0.96237 1.59473 1.18211 1.55499 1.04041 1.20939 0.97894 0.96381 0.93439 1.22327 0.93337 0.93698 0.98007 1.67079 1.14101 1.07099 1.30498 1.20796 1.00869 0.99603 0.88129 1.21792 1.06116 1.00311 0.97041 1.22645 0.93081 0.95007 0.92595 1.41653 1.38625 1.28411 1.09991 0.72760 1.19048 1.00169 0.96228 0.91703 1.20417 0.98797 0.94930 0.99112 0.92153 0.83684 0.87021 0.83201 0.81820 0.75184 0.84760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.87 11.54 21.45 0.25 -49.62 15 2 C 0.03 1.43 5.38 84.65 0.46 1.88 15 3 Si 0.96 42.82 29.54 68.60 2.03 44.84 15 4 H -0.28 -12.39 7.11 99.48 0.71 -11.68 15 5 H -0.28 -12.00 7.11 99.48 0.71 -11.29 15 6 H -0.28 -12.12 7.11 99.48 0.71 -11.41 15 7 C -0.56 -30.36 8.71 25.60 0.22 -30.14 15 8 H 0.04 2.42 7.74 -2.91 -0.02 2.40 15 9 C 0.25 12.94 2.96 43.42 0.13 13.07 15 10 H 0.02 1.09 8.03 -2.39 -0.02 1.07 15 11 N -0.84 -40.98 9.02 -174.96 -1.58 -42.56 15 12 C -0.08 -3.79 4.91 -19.75 -0.10 -3.88 15 13 C 0.09 4.12 10.44 84.84 0.89 5.01 15 14 N -0.48 -20.63 10.42 -185.11 -1.93 -22.56 15 15 C 0.04 1.48 7.52 41.72 0.31 1.80 15 16 C -0.23 -6.14 11.08 23.52 0.26 -5.88 15 17 C 0.10 1.78 11.81 83.06 0.98 2.76 15 18 N -0.58 -13.36 6.06 -187.59 -1.14 -14.49 15 19 H 0.43 6.71 8.96 -92.71 -0.83 5.88 15 20 C 0.04 1.33 7.29 39.08 0.28 1.61 15 21 C -0.10 -4.14 9.82 22.52 0.22 -3.92 15 22 H 0.27 13.91 8.31 -92.71 -0.77 13.14 15 23 H 0.35 17.94 7.08 -89.69 -0.63 17.30 15 24 H 0.32 14.71 7.34 -89.70 -0.66 14.05 15 25 H 0.15 6.46 6.64 -2.91 -0.02 6.44 15 26 H 0.16 3.71 8.06 -2.91 -0.02 3.69 15 27 H 0.23 1.49 8.06 -2.91 -0.02 1.46 15 28 H 0.13 4.93 8.06 -2.91 -0.02 4.91 15 Total: -1.00 -66.50 246.06 0.38 -66.12 By element: Atomic # 1 Polarization: 36.86 SS G_CDS: -0.90 Total: 35.95 kcal Atomic # 6 Polarization: -21.35 SS G_CDS: 3.66 Total: -17.69 kcal Atomic # 7 Polarization: -124.83 SS G_CDS: -4.40 Total: -129.22 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.84 kcal Total: -66.50 0.38 -66.12 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089221493.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.040 kcal (2) G-P(sol) polarization free energy of solvation -66.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds