Wall clock time and date at job start Mon Mar 30 2020 02:29:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 H 1.08993 * 109.47304 * 59.99945 * 9 7 2 11 11 N 1.46902 * 109.46927 * 299.99200 * 9 7 2 12 12 C 1.50706 * 109.47294 * 179.97438 * 9 7 2 13 13 C 1.38685 * 120.16447 * 79.99335 * 12 9 7 14 14 N 1.31527 * 121.27387 * 180.02562 * 13 12 9 15 15 C 1.33002 * 121.40645 * 359.97438 * 14 13 12 16 16 C 1.46416 * 133.75875 * 180.02562 * 15 14 13 17 17 C 1.34362 * 107.08060 * 179.97438 * 16 15 14 18 18 N 1.36640 * 109.94326 * 359.97438 * 17 16 15 19 19 H 0.96999 * 125.09682 * 179.97438 * 18 17 16 20 20 C 1.37621 * 109.80713 * 359.97438 * 18 17 16 21 21 C 1.38309 * 120.15931 * 259.72216 * 12 9 7 22 22 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 23 23 H 1.00901 * 111.00140 * 176.04487 * 11 9 7 24 24 H 1.00896 * 111.00210 * 300.00212 * 11 9 7 25 25 H 1.07995 * 119.35847 * 359.97438 * 13 12 9 26 26 H 1.08001 * 126.46139 * 359.96614 * 16 15 14 27 27 H 1.07999 * 125.03013 * 180.02562 * 17 16 15 28 28 H 1.07998 * 120.85705 * 359.97438 * 21 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6248 -2.5571 -0.8896 11 7 0.4062 -2.5767 1.1998 12 6 2.2304 -3.6446 0.0005 13 6 2.8417 -4.0389 1.1813 14 7 3.6999 -5.0352 1.2063 15 6 4.0164 -5.7052 0.1019 16 6 4.9119 -6.8289 -0.1793 17 6 4.8238 -7.0841 -1.4955 18 7 3.9451 -6.2166 -2.0806 19 1 3.7165 -6.2055 -3.0232 20 6 3.4329 -5.3611 -1.1320 21 6 2.5198 -4.3114 -1.1761 22 1 -0.4850 -0.8401 -0.0004 23 1 -0.1577 -3.4134 1.1913 24 1 0.9640 -2.5251 2.0390 25 1 2.6089 -3.5172 2.0979 26 1 5.5274 -7.3538 0.5364 27 1 5.3665 -7.8605 -2.0141 28 1 2.0513 -4.0235 -2.1056 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089221496.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:36 Heat of formation + Delta-G solvation = 64.342184 kcal Electronic energy + Delta-G solvation = -13862.561824 eV Core-core repulsion = 11492.632847 eV Total energy + Delta-G solvation = -2369.928977 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.13617 -37.84271 -34.89766 -32.18335 -31.07825 -29.65895 -28.41901 -25.52712 -23.29909 -22.74798 -20.60404 -20.35394 -17.77954 -16.81156 -16.09594 -15.74151 -14.57656 -14.37394 -14.27058 -13.65723 -13.26552 -12.97184 -12.46739 -12.23153 -12.21338 -11.85535 -11.26396 -10.73309 -10.52628 -10.06130 -9.82607 -8.91631 -8.74083 -8.34529 -7.93994 -7.70062 -7.47160 -6.20231 -4.04201 1.45303 1.87055 2.87931 3.23152 3.48346 3.50073 3.68458 4.42228 4.58379 4.61478 5.04634 5.29413 5.38006 5.49722 5.56181 5.68706 6.01473 6.02752 6.15344 6.27553 6.69092 6.74801 6.83516 7.17789 7.38159 7.60438 7.92999 8.25087 8.55312 8.61882 8.72458 9.02693 9.79314 11.19574 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.045676 B = 0.007572 C = 0.007329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.862976 B = 3697.182390 C = 3819.563365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.040 3.960 3 Si 1.064 2.936 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.288 1.288 7 C -0.610 4.610 8 H 0.046 0.954 9 C 0.245 3.755 10 H 0.039 0.961 11 N -0.828 5.828 12 C -0.096 4.096 13 C 0.096 3.904 14 N -0.456 5.456 15 C 0.064 3.936 16 C -0.192 4.192 17 C 0.052 3.948 18 N -0.596 5.596 19 H 0.414 0.586 20 C 0.049 3.951 21 C -0.098 4.098 22 H 0.290 0.710 23 H 0.303 0.697 24 H 0.328 0.672 25 H 0.152 0.848 26 H 0.147 0.853 27 H 0.172 0.828 28 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.420 -11.903 -3.702 14.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.170 4.170 3 Si 0.893 3.107 4 H -0.209 1.209 5 H -0.218 1.218 6 H -0.215 1.215 7 C -0.648 4.648 8 H 0.065 0.935 9 C 0.135 3.865 10 H 0.057 0.943 11 N -0.356 5.356 12 C -0.102 4.102 13 C -0.072 4.072 14 N -0.164 5.164 15 C -0.068 4.068 16 C -0.219 4.219 17 C -0.076 4.076 18 N -0.200 5.200 19 H 0.250 0.750 20 C -0.059 4.059 21 C -0.127 4.127 22 H 0.102 0.898 23 H 0.114 0.886 24 H 0.141 0.859 25 H 0.170 0.830 26 H 0.165 0.835 27 H 0.189 0.811 28 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 6.274 -9.892 -3.298 12.169 hybrid contribution 0.424 -2.329 -1.082 2.603 sum 6.698 -12.221 -4.380 14.608 Atomic orbital electron populations 1.70559 1.06814 1.32796 1.42102 1.25626 0.96570 1.01801 0.93028 0.83637 0.74919 0.75713 0.76422 1.20866 1.21753 1.21502 1.21656 0.93418 0.90282 1.59475 0.93531 1.18299 0.87756 0.90030 0.90422 0.94307 1.59459 1.28462 1.42363 1.05294 1.22228 0.98779 0.96815 0.92340 1.22417 0.93302 0.93229 0.98209 1.67067 1.13391 1.06650 1.29262 1.19979 1.00111 0.98616 0.88082 1.21438 1.05061 1.00361 0.94997 1.21749 0.95912 0.96356 0.93610 1.41566 1.39201 1.29532 1.09678 0.74996 1.19189 1.00254 0.95864 0.90587 1.20388 0.98396 0.94458 0.99494 0.89761 0.88608 0.85872 0.83042 0.83515 0.81128 0.85650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.36 13.50 55.43 0.75 -25.61 15 2 C 0.04 1.12 5.39 -17.82 -0.10 1.02 15 3 Si 1.06 25.10 29.90 -169.99 -5.08 20.02 15 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 15 5 H -0.29 -6.61 7.11 56.52 0.40 -6.21 15 6 H -0.29 -6.59 7.11 56.52 0.40 -6.19 15 7 C -0.61 -16.72 8.71 -34.44 -0.30 -17.02 15 8 H 0.05 1.31 7.74 -52.48 -0.41 0.91 15 9 C 0.24 5.89 2.47 -70.01 -0.17 5.72 15 10 H 0.04 1.00 7.89 -51.93 -0.41 0.59 15 11 N -0.83 -18.50 7.62 -6.65 -0.05 -18.55 15 12 C -0.10 -2.06 4.90 -104.43 -0.51 -2.57 15 13 C 0.10 1.99 10.44 -17.52 -0.18 1.81 15 14 N -0.46 -9.42 10.42 -9.86 -0.10 -9.52 15 15 C 0.06 1.22 7.52 -83.12 -0.62 0.60 15 16 C -0.19 -2.82 11.08 -37.66 -0.42 -3.23 15 17 C 0.05 0.60 11.81 -16.78 -0.20 0.40 15 18 N -0.60 -7.74 6.06 -10.64 -0.06 -7.81 15 19 H 0.41 3.96 8.96 -40.82 -0.37 3.59 15 20 C 0.05 0.88 7.29 -83.96 -0.61 0.26 15 21 C -0.10 -1.90 9.82 -39.20 -0.38 -2.28 15 22 H 0.29 8.55 6.40 -40.82 -0.26 8.29 15 23 H 0.30 5.98 9.06 -39.29 -0.36 5.63 15 24 H 0.33 7.04 7.34 -39.29 -0.29 6.76 15 25 H 0.15 3.00 6.65 -52.49 -0.35 2.65 15 26 H 0.15 1.83 8.06 -52.49 -0.42 1.41 15 27 H 0.17 1.16 8.06 -52.49 -0.42 0.74 15 28 H 0.13 2.24 8.06 -52.49 -0.42 1.82 15 LS Contribution 246.45 15.07 3.71 3.71 Total: -1.00 -32.55 246.45 -6.84 -39.38 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: -2.50 Total: 13.68 kcal Atomic # 6 Polarization: -11.80 SS G_CDS: -3.50 Total: -15.30 kcal Atomic # 7 Polarization: -62.02 SS G_CDS: 0.53 Total: -61.49 kcal Atomic # 14 Polarization: 25.10 SS G_CDS: -5.08 Total: 20.02 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -32.55 -6.84 -39.38 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089221496.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.727 kcal (2) G-P(sol) polarization free energy of solvation -32.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds