Wall clock time and date at job start Mon Mar 30 2020 03:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46904 * 111.00183 * 2 1 4 4 C 1.50694 * 109.47256 * 66.04093 * 3 2 1 5 5 H 1.08003 * 119.99944 * 0.02562 * 4 3 2 6 6 C 1.37875 * 120.00073 * 180.02562 * 4 3 2 7 7 N 1.31515 * 120.00022 * 0.02562 * 6 4 3 8 8 Si 1.86801 * 120.00185 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.47025 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.47128 * 120.00166 * 8 6 4 11 11 H 1.48502 * 109.47295 * 240.00008 * 8 6 4 12 12 C 1.39069 * 111.00508 * 236.04183 * 2 1 3 13 13 C 1.39048 * 120.60405 * 64.22443 * 12 2 1 14 14 N 1.31645 * 120.77702 * 180.26717 * 13 12 2 15 15 C 1.31958 * 122.18339 * 359.73940 * 14 13 12 16 16 C 1.37902 * 121.12326 * 359.97438 * 15 14 13 17 17 C 1.40027 * 119.07865 * 0.02562 * 16 15 14 18 18 C 1.43205 * 120.97898 * 179.97438 * 17 16 15 19 19 N 3.57985 * 119.04647 * 151.17661 * 2 1 3 20 20 H 1.08998 * 109.46986 * 183.95352 * 1 2 3 21 21 H 1.08998 * 109.47246 * 303.95998 * 1 2 3 22 22 H 1.09001 * 109.46504 * 63.95906 * 1 2 3 23 23 H 1.08997 * 109.47227 * 186.04541 * 3 2 1 24 24 H 1.09007 * 109.46766 * 306.03928 * 3 2 1 25 25 H 0.97001 * 120.00304 * 180.02562 * 7 6 4 26 26 H 1.08007 * 119.60932 * 359.97438 * 13 12 2 27 27 H 1.07995 * 119.44228 * 180.02562 * 15 14 13 28 28 H 1.07997 * 120.46288 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0472 1.2983 5 1 1.0745 1.5113 2.0487 6 6 2.0268 3.3495 1.5283 7 7 2.7112 4.0022 0.6144 8 14 1.5817 4.1875 3.1374 9 1 0.8145 3.2448 3.9907 10 1 2.8230 4.5951 3.8432 11 1 0.7542 5.3884 2.8578 12 6 1.9675 -0.7252 -1.0769 13 6 1.7354 -0.3046 -2.3817 14 7 2.2012 -0.9914 -3.4037 15 6 2.9065 -2.0954 -3.2458 16 6 3.1915 -2.5854 -1.9886 17 6 2.7203 -1.8941 -0.8658 18 6 2.9918 -2.3668 0.4584 19 7 3.2071 -2.7419 1.5088 20 1 -0.3633 -1.0252 0.0709 21 1 -0.3633 0.5741 0.8524 22 1 -0.3632 0.4512 -0.9234 23 1 3.0797 1.3444 -0.1082 24 1 1.5612 1.9273 -0.8311 25 1 2.9858 4.9183 0.7763 26 1 1.1622 0.5935 -2.5590 27 1 3.2675 -2.6237 -4.1157 28 1 3.7701 -3.4898 -1.8717 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000124994284.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:39 Heat of formation + Delta-G solvation = 75.286132 kcal Electronic energy + Delta-G solvation = -13761.869333 eV Core-core repulsion = 11392.414921 eV Total energy + Delta-G solvation = -2369.454411 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.36085 -36.77508 -36.23297 -32.80877 -32.27986 -30.01509 -27.39957 -25.52098 -24.45802 -23.08593 -20.75963 -19.10362 -16.79462 -16.39766 -15.71559 -15.01389 -14.89948 -14.23380 -14.03895 -13.35050 -13.18226 -12.88324 -12.85096 -12.64082 -12.18654 -11.87719 -11.38422 -11.07580 -10.80886 -10.70366 -10.17765 -9.79378 -9.54212 -9.41247 -8.71571 -8.56364 -7.66233 -6.14650 -4.17292 0.82301 1.15973 2.99144 3.25675 3.29979 3.33697 3.38386 4.00359 4.07218 4.24151 4.42836 4.64715 5.01443 5.09440 5.21671 5.41035 5.65084 5.79389 5.90768 5.98548 6.17233 6.52521 6.60553 7.02755 7.06869 7.63588 7.75218 7.79983 7.94989 8.00806 8.33702 8.88939 9.47706 10.96065 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.034764 B = 0.008312 C = 0.007474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.233826 B = 3367.935977 C = 3745.201200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.517 5.517 3 C 0.198 3.802 4 C -0.513 4.513 5 H 0.066 0.934 6 C 0.059 3.941 7 N -0.895 5.895 8 Si 0.900 3.100 9 H -0.271 1.271 10 H -0.283 1.283 11 H -0.283 1.283 12 C 0.116 3.884 13 C 0.076 3.924 14 N -0.462 5.462 15 C 0.079 3.921 16 C -0.124 4.124 17 C 0.022 3.978 18 C 0.273 3.727 19 N -0.409 5.409 20 H 0.049 0.951 21 H 0.087 0.913 22 H 0.025 0.975 23 H 0.033 0.967 24 H 0.004 0.996 25 H 0.263 0.737 26 H 0.163 0.837 27 H 0.161 0.839 28 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.619 -9.930 -7.214 12.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 N -0.240 5.240 3 C 0.076 3.924 4 C -0.551 4.551 5 H 0.085 0.915 6 C -0.143 4.143 7 N -0.534 5.534 8 Si 0.728 3.272 9 H -0.196 1.196 10 H -0.209 1.209 11 H -0.209 1.209 12 C 0.016 3.984 13 C -0.085 4.085 14 N -0.171 5.171 15 C -0.076 4.076 16 C -0.147 4.147 17 C 0.010 3.990 18 C -0.043 4.043 19 N -0.085 5.085 20 H 0.068 0.932 21 H 0.106 0.894 22 H 0.043 0.957 23 H 0.051 0.949 24 H 0.022 0.978 25 H 0.073 0.927 26 H 0.180 0.820 27 H 0.178 0.822 28 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -1.225 -10.246 -6.013 11.943 hybrid contribution -0.250 0.929 0.603 1.135 sum -1.475 -9.317 -5.410 10.874 Atomic orbital electron populations 1.22302 0.85835 1.00482 1.01867 1.59687 1.08426 1.18987 1.36853 1.19904 0.95640 0.79184 0.97721 1.21103 1.35571 0.96970 1.01495 0.91544 1.24969 0.95014 0.97231 0.97127 1.69956 1.37885 1.11563 1.34002 0.86404 0.78271 0.79302 0.83266 1.19577 1.20914 1.20930 1.20177 0.94027 0.92361 0.91826 1.23551 0.97806 0.99141 0.87993 1.67451 1.07982 1.06202 1.35493 1.22578 0.95913 0.93008 0.96142 1.22131 0.99924 1.00585 0.92061 1.16406 1.00273 0.95485 0.86860 1.25065 0.93785 0.93048 0.92392 1.81140 1.07928 1.09287 1.10134 0.93188 0.89429 0.95653 0.94923 0.97798 0.92726 0.82005 0.82155 0.83986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.74 9.20 60.06 0.55 1.29 15 2 N -0.52 -10.60 4.18 -179.93 -0.75 -11.36 15 3 C 0.20 4.87 4.30 -4.98 -0.02 4.85 15 4 C -0.51 -13.89 8.46 -34.44 -0.29 -14.18 15 5 H 0.07 1.80 7.12 -52.48 -0.37 1.42 15 6 C 0.06 1.62 5.46 -17.82 -0.10 1.52 15 7 N -0.90 -25.80 13.29 55.43 0.74 -25.07 15 8 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 15 9 H -0.27 -6.33 7.11 56.52 0.40 -5.92 15 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 15 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 15 12 C 0.12 2.04 4.68 -83.38 -0.39 1.65 15 13 C 0.08 1.23 9.85 -17.33 -0.17 1.05 15 14 N -0.46 -6.78 10.33 -13.14 -0.14 -6.92 15 15 C 0.08 0.92 11.16 -17.62 -0.20 0.72 15 16 C -0.12 -1.46 9.86 -39.03 -0.38 -1.84 15 17 C 0.02 0.34 5.78 -106.40 -0.62 -0.27 15 18 C 0.27 4.80 14.95 -22.47 -0.34 4.47 15 19 N -0.41 -7.90 18.54 41.83 0.78 -7.12 15 20 H 0.05 0.78 8.14 -51.93 -0.42 0.36 15 21 H 0.09 1.67 6.76 -51.93 -0.35 1.32 15 22 H 0.02 0.41 7.38 -51.93 -0.38 0.03 15 23 H 0.03 0.88 8.06 -51.93 -0.42 0.47 15 24 H 0.00 0.11 7.48 -51.93 -0.39 -0.28 15 25 H 0.26 7.17 8.31 -40.82 -0.34 6.83 15 26 H 0.16 2.59 7.16 -52.48 -0.38 2.21 15 27 H 0.16 1.25 8.06 -52.49 -0.42 0.83 15 28 H 0.14 1.20 8.06 -52.49 -0.42 0.78 15 LS Contribution 257.41 15.07 3.88 3.88 Total: -1.00 -30.35 257.41 -5.16 -35.51 By element: Atomic # 1 Polarization: -1.74 SS G_CDS: -2.69 Total: -4.44 kcal Atomic # 6 Polarization: 1.22 SS G_CDS: -1.95 Total: -0.73 kcal Atomic # 7 Polarization: -51.09 SS G_CDS: 0.62 Total: -50.46 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -30.35 -5.16 -35.51 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124994284.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.797 kcal (2) G-P(sol) polarization free energy of solvation -30.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds