Wall clock time and date at job start Mon Mar 30 2020 03:30:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86796 * 119.99858 * 2 1 4 4 H 1.48496 * 109.47005 * 239.99647 * 3 2 1 5 5 H 1.48504 * 109.47341 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47156 * 119.99910 * 3 2 1 7 7 C 1.37879 * 119.99817 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99607 * 185.33653 * 7 2 1 9 9 C 1.50700 * 120.00036 * 5.34017 * 7 2 1 10 10 H 1.09001 * 109.22423 * 25.40563 * 9 7 2 11 11 C 1.52730 * 109.25325 * 265.95438 * 9 7 2 12 12 C 1.53324 * 108.39372 * 290.90436 * 11 9 7 13 13 H 1.09003 * 109.67362 * 49.93148 * 12 11 9 14 14 N 1.46897 * 109.67717 * 170.43073 * 12 11 9 15 15 C 1.52722 * 108.41362 * 290.20261 * 12 11 9 16 16 C 1.50628 * 110.60092 * 51.09586 * 15 12 11 17 17 C 1.38907 * 117.76361 * 162.36790 * 16 15 12 18 18 C 1.37928 * 120.54644 * 179.31970 * 17 16 15 19 19 C 1.38263 * 119.77496 * 0.29825 * 18 17 16 20 20 C 1.37939 * 119.76702 * 359.62867 * 19 18 17 21 21 C 1.37667 * 122.55654 * 342.00698 * 16 15 12 22 22 H 0.96996 * 119.99776 * 359.97438 * 1 2 3 23 23 H 1.08998 * 109.68245 * 50.63312 * 11 9 7 24 24 H 1.08999 * 109.68329 * 171.14786 * 11 9 7 25 25 H 1.00899 * 110.99811 * 180.02562 * 14 12 11 26 26 H 1.00901 * 111.00164 * 303.95563 * 14 12 11 27 27 H 1.09006 * 109.24989 * 290.81095 * 15 12 11 28 28 H 1.09001 * 109.25624 * 171.39025 * 15 12 11 29 29 H 1.08010 * 119.72713 * 359.34792 * 17 16 15 30 30 H 1.08002 * 120.11550 * 180.02562 * 18 17 16 31 31 H 1.08002 * 120.12032 * 179.87982 * 19 18 17 32 32 H 1.08006 * 119.72625 * 180.24613 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0810 -1.1960 0.0875 9 6 1.2559 -2.4964 -0.1203 10 1 0.3099 -2.3203 -0.6323 11 6 0.9777 -3.0489 1.2761 12 6 2.3090 -3.4892 1.8962 13 1 3.0415 -2.6877 1.8002 14 7 2.1110 -3.8107 3.3159 15 6 2.8018 -4.7281 1.1514 16 6 2.7990 -4.4885 -0.3357 17 6 3.5518 -5.3437 -1.1303 18 6 3.5792 -5.1853 -2.5002 19 6 2.8567 -4.1635 -3.0878 20 6 2.1072 -3.3141 -2.3006 21 6 2.0801 -3.4706 -0.9207 22 1 -0.4849 0.8400 0.0004 23 1 0.5235 -2.2740 1.8937 24 1 0.3047 -3.9034 1.2055 25 1 2.9764 -4.1030 3.7445 26 1 1.7086 -3.0290 3.8110 27 1 2.1478 -5.5693 1.3811 28 1 3.8156 -4.9629 1.4757 29 1 4.1201 -6.1395 -0.6716 30 1 4.1666 -5.8546 -3.1114 31 1 2.8757 -4.0332 -4.1598 32 1 1.5399 -2.5185 -2.7607 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000143991433.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:28 Heat of formation + Delta-G solvation = 4.214029 kcal Electronic energy + Delta-G solvation = -14574.322473 eV Core-core repulsion = 12305.326487 eV Total energy + Delta-G solvation = -2268.995986 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.26121 -36.03286 -33.47061 -31.47322 -31.08462 -28.44801 -27.09147 -24.96488 -22.15722 -21.21952 -21.04954 -18.45796 -16.16411 -15.84786 -15.04898 -14.82555 -14.48990 -14.29494 -13.74120 -13.01667 -12.58314 -12.51329 -12.19837 -11.93293 -11.39036 -11.08814 -10.98614 -10.81832 -10.68046 -10.46680 -10.11232 -9.80177 -9.21373 -9.03865 -8.47012 -8.10932 -7.96849 -7.66418 -6.08627 -4.12671 2.10400 2.22234 3.26775 3.32103 3.35327 4.35110 4.58549 5.02353 5.23910 5.48943 5.60475 5.68778 5.74120 5.87866 6.03766 6.20329 6.25789 6.32427 6.53815 6.68653 6.78210 6.85029 7.00622 7.05250 7.14197 7.24167 7.40741 7.59912 7.73664 7.81371 7.85603 7.89116 8.03020 8.32266 8.94297 9.50517 10.98939 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.023908 B = 0.012291 C = 0.009231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.881805 B = 2277.510046 C = 3032.408678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.066 3.934 3 Si 0.890 3.110 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.502 4.502 8 H 0.053 0.947 9 C 0.064 3.936 10 H 0.069 0.931 11 C -0.088 4.088 12 C 0.092 3.908 13 H 0.048 0.952 14 N -0.851 5.851 15 C -0.063 4.063 16 C -0.094 4.094 17 C -0.127 4.127 18 C -0.149 4.149 19 C -0.132 4.132 20 C -0.112 4.112 21 C -0.026 4.026 22 H 0.263 0.737 23 H 0.062 0.938 24 H 0.034 0.966 25 H 0.327 0.673 26 H 0.340 0.660 27 H 0.072 0.928 28 H 0.055 0.945 29 H 0.107 0.893 30 H 0.108 0.892 31 H 0.109 0.891 32 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.744 -6.877 0.039 8.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.137 4.137 3 Si 0.718 3.282 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.203 1.203 7 C -0.540 4.540 8 H 0.071 0.929 9 C 0.045 3.955 10 H 0.087 0.913 11 C -0.127 4.127 12 C -0.018 4.018 13 H 0.066 0.934 14 N -0.380 5.380 15 C -0.101 4.101 16 C -0.094 4.094 17 C -0.146 4.146 18 C -0.167 4.167 19 C -0.150 4.150 20 C -0.131 4.131 21 C -0.026 4.026 22 H 0.073 0.927 23 H 0.080 0.920 24 H 0.052 0.948 25 H 0.138 0.862 26 H 0.152 0.848 27 H 0.090 0.910 28 H 0.073 0.927 29 H 0.125 0.875 30 H 0.126 0.874 31 H 0.127 0.873 32 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 4.077 -7.305 -0.231 8.369 hybrid contribution 1.270 1.740 0.080 2.156 sum 5.347 -5.565 -0.151 7.719 Atomic orbital electron populations 1.69927 1.05868 1.26907 1.49982 1.24962 0.94835 0.99042 0.94820 0.86686 0.79659 0.83139 0.78724 1.20155 1.21238 1.20328 1.20879 0.93057 0.89573 1.50516 0.92870 1.17979 0.95914 0.90952 0.90642 0.91333 1.21576 0.93861 0.98257 0.98955 1.21344 0.99080 0.95021 0.86388 0.93389 1.58860 1.31794 1.43396 1.03931 1.20332 1.00067 0.98632 0.91053 1.19580 0.98544 0.96270 0.95021 1.20967 1.00296 0.99482 0.93812 1.20765 1.01741 0.99474 0.94708 1.20972 0.98642 0.96426 0.98985 1.21215 0.99350 0.98639 0.93848 1.20449 0.95017 0.93084 0.94056 0.92729 0.91971 0.94751 0.86239 0.84799 0.90997 0.92660 0.87501 0.87426 0.87284 0.86379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.88 12.84 55.43 0.71 -24.16 16 2 C 0.07 1.76 5.45 -17.82 -0.10 1.67 16 3 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.50 -13.28 7.21 -34.44 -0.25 -13.53 16 8 H 0.05 1.44 7.64 -52.49 -0.40 1.03 16 9 C 0.06 1.56 2.22 -93.10 -0.21 1.36 16 10 H 0.07 1.86 7.36 -51.93 -0.38 1.47 16 11 C -0.09 -1.98 4.97 -26.70 -0.13 -2.11 16 12 C 0.09 1.80 3.22 -67.69 -0.22 1.58 16 13 H 0.05 1.04 7.07 -51.93 -0.37 0.67 16 14 N -0.85 -14.03 9.26 -4.65 -0.04 -14.07 16 15 C -0.06 -1.15 5.27 -28.06 -0.15 -1.29 16 16 C -0.09 -1.85 5.74 -104.62 -0.60 -2.45 16 17 C -0.13 -2.23 9.61 -39.45 -0.38 -2.61 16 18 C -0.15 -2.49 10.05 -39.69 -0.40 -2.89 16 19 C -0.13 -2.36 10.05 -39.68 -0.40 -2.76 16 20 C -0.11 -2.34 9.52 -39.44 -0.38 -2.72 16 21 C -0.03 -0.57 5.00 -104.62 -0.52 -1.09 16 22 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 23 H 0.06 1.50 8.10 -51.93 -0.42 1.08 16 24 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 25 H 0.33 4.58 9.05 -39.29 -0.36 4.22 16 26 H 0.34 5.43 8.99 -39.29 -0.35 5.07 16 27 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 28 H 0.05 0.89 8.12 -51.93 -0.42 0.47 16 29 H 0.11 1.59 8.05 -52.48 -0.42 1.17 16 30 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 31 H 0.11 1.65 8.06 -52.49 -0.42 1.22 16 32 H 0.12 2.49 8.05 -52.48 -0.42 2.07 16 LS Contribution 264.37 15.07 3.98 3.98 Total: -1.00 -27.73 264.37 -8.46 -36.19 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -4.37 Total: 9.00 kcal Atomic # 6 Polarization: -23.13 SS G_CDS: -3.73 Total: -26.85 kcal Atomic # 7 Polarization: -38.91 SS G_CDS: 0.67 Total: -38.24 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -27.73 -8.46 -36.19 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000143991433.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.407 kcal (2) G-P(sol) polarization free energy of solvation -27.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds