Wall clock time and date at job start Mon Mar 30 2020 03:30:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86796 * 119.99858 * 2 1 4 4 H 1.48496 * 109.47005 * 239.99647 * 3 2 1 5 5 H 1.48504 * 109.47341 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47156 * 119.99910 * 3 2 1 7 7 C 1.37879 * 119.99817 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99607 * 185.33653 * 7 2 1 9 9 C 1.50700 * 120.00036 * 5.34017 * 7 2 1 10 10 H 1.09001 * 109.22423 * 25.40563 * 9 7 2 11 11 C 1.52730 * 109.25325 * 265.95438 * 9 7 2 12 12 C 1.53324 * 108.39372 * 290.90436 * 11 9 7 13 13 H 1.09003 * 109.67362 * 49.93148 * 12 11 9 14 14 N 1.46897 * 109.67717 * 170.43073 * 12 11 9 15 15 C 1.52722 * 108.41362 * 290.20261 * 12 11 9 16 16 C 1.50628 * 110.60092 * 51.09586 * 15 12 11 17 17 C 1.38907 * 117.76361 * 162.36790 * 16 15 12 18 18 C 1.37928 * 120.54644 * 179.31970 * 17 16 15 19 19 C 1.38263 * 119.77496 * 0.29825 * 18 17 16 20 20 C 1.37939 * 119.76702 * 359.62867 * 19 18 17 21 21 C 1.37667 * 122.55654 * 342.00698 * 16 15 12 22 22 H 0.96996 * 119.99776 * 359.97438 * 1 2 3 23 23 H 1.08998 * 109.68245 * 50.63312 * 11 9 7 24 24 H 1.08999 * 109.68329 * 171.14786 * 11 9 7 25 25 H 1.00899 * 110.99811 * 180.02562 * 14 12 11 26 26 H 1.00901 * 111.00164 * 303.95563 * 14 12 11 27 27 H 1.09006 * 109.24989 * 290.81095 * 15 12 11 28 28 H 1.09001 * 109.25624 * 171.39025 * 15 12 11 29 29 H 1.08010 * 119.72713 * 359.34792 * 17 16 15 30 30 H 1.08002 * 120.11550 * 180.02562 * 18 17 16 31 31 H 1.08002 * 120.12032 * 179.87982 * 19 18 17 32 32 H 1.08006 * 119.72625 * 180.24613 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0810 -1.1960 0.0875 9 6 1.2559 -2.4964 -0.1203 10 1 0.3099 -2.3203 -0.6323 11 6 0.9777 -3.0489 1.2761 12 6 2.3090 -3.4892 1.8962 13 1 3.0415 -2.6877 1.8002 14 7 2.1110 -3.8107 3.3159 15 6 2.8018 -4.7281 1.1514 16 6 2.7990 -4.4885 -0.3357 17 6 3.5518 -5.3437 -1.1303 18 6 3.5792 -5.1853 -2.5002 19 6 2.8567 -4.1635 -3.0878 20 6 2.1072 -3.3141 -2.3006 21 6 2.0801 -3.4706 -0.9207 22 1 -0.4849 0.8400 0.0004 23 1 0.5235 -2.2740 1.8937 24 1 0.3047 -3.9034 1.2055 25 1 2.9764 -4.1030 3.7445 26 1 1.7086 -3.0290 3.8110 27 1 2.1478 -5.5693 1.3811 28 1 3.8156 -4.9629 1.4757 29 1 4.1201 -6.1395 -0.6716 30 1 4.1666 -5.8546 -3.1114 31 1 2.8757 -4.0332 -4.1598 32 1 1.5399 -2.5185 -2.7607 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000143991433.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:27 Heat of formation + Delta-G solvation = -12.611621 kcal Electronic energy + Delta-G solvation = -14575.052088 eV Core-core repulsion = 12305.326487 eV Total energy + Delta-G solvation = -2269.725601 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.80567 -37.57679 -35.31935 -33.14216 -32.65433 -30.06801 -28.58491 -26.92960 -23.81311 -22.71320 -22.65836 -20.15933 -18.11608 -17.34449 -16.69535 -16.41662 -16.17602 -15.74141 -15.27693 -14.63173 -14.38972 -14.03781 -13.78667 -13.54193 -13.04840 -12.92212 -12.71528 -12.54089 -12.35559 -12.01134 -11.93347 -11.46053 -11.12536 -10.81095 -10.50564 -9.54924 -9.43952 -9.23427 -8.14408 -6.25239 0.64303 0.74226 1.37285 1.38663 1.46402 2.39016 3.06238 3.15853 3.63934 4.01840 4.13976 4.31592 4.34253 4.41279 4.50191 4.68351 4.74762 4.83405 4.96349 5.12820 5.17877 5.29136 5.35690 5.39699 5.52482 5.58995 5.73180 5.75479 5.91358 6.17125 6.25858 6.33813 6.39399 6.72958 6.87200 7.40264 8.92046 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.023908 B = 0.012291 C = 0.009231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.881805 B = 2277.510046 C = 3032.408678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.016 3.984 3 Si 0.950 3.050 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.271 1.271 7 C -0.505 4.505 8 H 0.044 0.956 9 C 0.066 3.934 10 H 0.024 0.976 11 C -0.080 4.080 12 C 0.103 3.897 13 H 0.024 0.976 14 N -0.844 5.844 15 C -0.058 4.058 16 C -0.106 4.106 17 C -0.123 4.123 18 C -0.137 4.137 19 C -0.130 4.130 20 C -0.139 4.139 21 C -0.060 4.060 22 H 0.262 0.738 23 H 0.032 0.968 24 H 0.033 0.967 25 H 0.346 0.654 26 H 0.342 0.658 27 H 0.080 0.920 28 H 0.084 0.916 29 H 0.144 0.856 30 H 0.150 0.850 31 H 0.137 0.863 32 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.131 -8.696 -0.083 11.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.183 4.183 3 Si 0.775 3.225 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.196 1.196 7 C -0.543 4.543 8 H 0.062 0.938 9 C 0.047 3.953 10 H 0.043 0.957 11 C -0.119 4.119 12 C -0.008 4.008 13 H 0.042 0.958 14 N -0.374 5.374 15 C -0.095 4.095 16 C -0.107 4.107 17 C -0.141 4.141 18 C -0.155 4.155 19 C -0.147 4.147 20 C -0.157 4.157 21 C -0.060 4.060 22 H 0.071 0.929 23 H 0.051 0.949 24 H 0.051 0.949 25 H 0.159 0.841 26 H 0.155 0.845 27 H 0.099 0.901 28 H 0.102 0.898 29 H 0.162 0.838 30 H 0.168 0.832 31 H 0.155 0.845 32 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 6.481 -9.137 -0.342 11.207 hybrid contribution 0.536 2.217 0.074 2.282 sum 7.017 -6.920 -0.268 9.859 Atomic orbital electron populations 1.70055 1.07224 1.27468 1.51430 1.25688 0.95560 1.02202 0.94813 0.85742 0.78501 0.79388 0.78855 1.19836 1.20846 1.19565 1.21067 0.92596 0.90908 1.49776 0.93761 1.17787 0.94308 0.91569 0.91681 0.95732 1.21389 0.95637 0.97098 0.97748 1.21077 0.96211 0.95337 0.88182 0.95846 1.58773 1.32933 1.43269 1.02418 1.20326 1.01757 0.97602 0.89848 1.19829 0.98536 0.96019 0.96300 1.21368 0.99280 0.99338 0.94142 1.21268 1.00471 0.98803 0.94975 1.21280 0.97482 0.95769 1.00215 1.21209 1.00910 0.99602 0.93992 1.20286 0.96812 0.94490 0.94460 0.92859 0.94890 0.94872 0.84077 0.84533 0.90145 0.89796 0.83836 0.83214 0.84506 0.88627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.16 12.84 21.45 0.28 -53.88 16 2 C 0.02 0.90 5.45 84.65 0.46 1.36 16 3 Si 0.95 43.95 29.54 68.60 2.03 45.97 16 4 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 5 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 6 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 7 C -0.51 -27.87 7.21 25.60 0.18 -27.68 16 8 H 0.04 2.46 7.64 -2.91 -0.02 2.44 16 9 C 0.07 3.38 2.22 -12.40 -0.03 3.35 16 10 H 0.02 1.44 7.36 -2.39 -0.02 1.42 16 11 C -0.08 -3.74 4.97 30.61 0.15 -3.59 16 12 C 0.10 3.99 3.22 44.93 0.14 4.13 16 13 H 0.02 1.03 7.07 -2.39 -0.02 1.01 16 14 N -0.84 -26.65 9.26 -168.61 -1.56 -28.21 16 15 C -0.06 -1.96 5.27 29.73 0.16 -1.81 16 16 C -0.11 -4.03 5.74 -19.86 -0.11 -4.14 16 17 C -0.12 -3.81 9.61 22.36 0.21 -3.59 16 18 C -0.14 -4.00 10.05 22.20 0.22 -3.78 16 19 C -0.13 -4.34 10.05 22.20 0.22 -4.12 16 20 C -0.14 -5.89 9.52 22.36 0.21 -5.68 16 21 C -0.06 -2.71 5.00 -19.86 -0.10 -2.81 16 22 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 23 H 0.03 1.67 8.10 -2.39 -0.02 1.65 16 24 H 0.03 1.50 8.10 -2.39 -0.02 1.48 16 25 H 0.35 8.82 9.05 -89.69 -0.81 8.01 16 26 H 0.34 10.72 8.99 -89.69 -0.81 9.92 16 27 H 0.08 2.61 8.14 -2.38 -0.02 2.59 16 28 H 0.08 2.37 8.12 -2.39 -0.02 2.35 16 29 H 0.14 3.39 8.05 -2.91 -0.02 3.37 16 30 H 0.15 3.15 8.06 -2.91 -0.02 3.13 16 31 H 0.14 3.73 8.06 -2.91 -0.02 3.71 16 32 H 0.10 4.32 8.05 -2.91 -0.02 4.30 16 Total: -1.00 -62.40 264.37 1.98 -60.43 By element: Atomic # 1 Polarization: 24.55 SS G_CDS: -0.50 Total: 24.06 kcal Atomic # 6 Polarization: -50.10 SS G_CDS: 1.73 Total: -48.36 kcal Atomic # 7 Polarization: -80.81 SS G_CDS: -1.29 Total: -82.09 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.97 kcal Total: -62.40 1.98 -60.43 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000143991433.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.814 kcal (2) G-P(sol) polarization free energy of solvation -62.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds