Wall clock time and date at job start Mon Mar 30 2020 02:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30053 * 124.91915 * 2 1 4 4 C 1.35840 * 109.42981 * 180.02562 * 3 2 1 5 5 C 1.39242 * 133.64990 * 180.40314 * 4 3 2 6 6 C 1.40762 * 117.97437 * 180.11660 * 5 4 3 7 7 C 1.41375 * 120.49161 * 179.74051 * 6 5 4 8 8 H 1.08001 * 120.00637 * 26.25159 * 7 6 5 9 9 C 1.39884 * 119.99581 * 206.25358 * 7 6 5 10 10 N 1.30878 * 119.99985 * 25.12364 * 9 7 6 11 11 Si 1.86805 * 120.00066 * 205.11966 * 9 7 6 12 12 H 1.48501 * 109.47095 * 180.02562 * 11 9 7 13 13 H 1.48504 * 109.46862 * 300.00001 * 11 9 7 14 14 H 1.48494 * 109.47181 * 60.00006 * 11 9 7 15 15 C 1.41060 * 119.01046 * 359.46489 * 6 5 4 16 16 N 1.31186 * 121.00673 * 0.25055 * 15 6 5 17 17 C 1.32710 * 121.94071 * 0.02562 * 16 15 6 18 18 N 1.36183 * 124.92257 * 180.02562 * 2 1 3 19 19 C 1.46496 * 126.22681 * 0.02562 * 18 2 1 20 20 H 1.09005 * 109.46959 * 90.02325 * 1 2 3 21 21 H 1.09005 * 109.47181 * 210.01631 * 1 2 3 22 22 H 1.08994 * 109.47424 * 330.02342 * 1 2 3 23 23 H 1.07998 * 121.01351 * 359.88345 * 5 4 3 24 24 H 0.96993 * 120.00038 * 5.82917 * 10 9 7 25 25 H 1.07999 * 119.49861 * 180.27386 * 15 6 5 26 26 H 1.09003 * 109.47134 * 269.97368 * 19 18 2 27 27 H 1.09000 * 109.47475 * 29.97090 * 19 18 2 28 28 H 1.08993 * 109.47445 * 149.97873 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2514 1.0664 0.0000 4 6 3.5605 0.7036 -0.0006 5 6 4.7558 1.4178 0.0063 6 6 5.9602 0.6894 0.0004 7 6 7.2045 1.3606 0.0014 8 1 7.2824 2.3532 0.4198 9 6 8.3348 0.7390 -0.5397 10 7 8.1975 -0.1881 -1.4532 11 14 10.0402 1.2323 0.0416 12 1 11.0605 0.4316 -0.6817 13 1 10.2585 2.6754 -0.2327 14 1 10.1574 0.9825 1.5006 15 6 5.9072 -0.7202 -0.0005 16 7 4.7582 -1.3533 -0.0009 17 6 3.5998 -0.7057 -0.0010 18 7 2.2866 -1.1166 -0.0005 19 6 1.8133 -2.5030 -0.0016 20 1 -0.3633 -0.0004 -1.0277 21 1 -0.3634 -0.8899 0.5141 22 1 -0.3634 0.8901 0.5134 23 1 4.7586 2.4978 0.0120 24 1 7.3199 -0.3851 -1.8162 25 1 6.8266 -1.2869 -0.0004 26 1 1.6959 -2.8477 1.0258 27 1 0.8535 -2.5589 -0.5154 28 1 2.5380 -3.1340 -0.5159 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214450335.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:14 Heat of formation + Delta-G solvation = 65.034734 kcal Electronic energy + Delta-G solvation = -13936.594044 eV Core-core repulsion = 11566.695099 eV Total energy + Delta-G solvation = -2369.898945 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.17486 -37.38562 -34.01578 -33.56701 -30.76703 -30.45699 -27.07140 -26.66208 -24.84090 -21.60688 -21.33945 -19.28584 -18.16429 -16.75688 -15.94423 -15.43939 -14.72687 -14.10669 -13.64287 -13.14564 -13.00163 -12.76770 -12.64296 -12.09488 -12.05544 -11.84828 -11.46574 -11.23165 -10.90951 -10.42711 -10.18441 -9.77812 -9.63142 -9.06021 -8.01023 -7.65984 -7.39291 -7.23645 -4.49600 1.95424 2.64049 3.14839 3.21061 3.24140 3.35566 3.69460 3.97933 4.50912 4.75197 5.05420 5.18009 5.34637 5.47433 5.49460 5.62113 5.70901 5.86565 6.11009 6.33017 6.43839 6.67883 7.05306 7.34754 7.48172 7.60489 7.86157 7.88355 7.97342 8.49146 8.63939 8.78190 9.21628 9.95812 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.064575 B = 0.007551 C = 0.006952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 433.503257 B = 3706.990702 C = 4026.733954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.260 3.740 3 N -0.509 5.509 4 C 0.054 3.946 5 C -0.183 4.183 6 C 0.044 3.956 7 C -0.510 4.510 8 H 0.081 0.919 9 C 0.038 3.962 10 N -0.797 5.797 11 Si 1.069 2.931 12 H -0.273 1.273 13 H -0.275 1.275 14 H -0.273 1.273 15 C 0.069 3.931 16 N -0.474 5.474 17 C 0.127 3.873 18 N -0.486 5.486 19 C 0.091 3.909 20 H 0.079 0.921 21 H 0.071 0.929 22 H 0.089 0.911 23 H 0.110 0.890 24 H 0.296 0.704 25 H 0.151 0.849 26 H 0.061 0.939 27 H 0.074 0.926 28 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.740 -2.762 1.830 8.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.005 4.005 3 N -0.233 5.233 4 C -0.064 4.064 5 C -0.212 4.212 6 C 0.038 3.962 7 C -0.539 4.539 8 H 0.099 0.901 9 C -0.183 4.183 10 N -0.421 5.421 11 Si 0.892 3.108 12 H -0.198 1.198 13 H -0.200 1.200 14 H -0.199 1.199 15 C -0.102 4.102 16 N -0.185 5.185 17 C -0.100 4.100 18 N -0.184 5.184 19 C -0.052 4.052 20 H 0.098 0.902 21 H 0.090 0.910 22 H 0.108 0.892 23 H 0.128 0.872 24 H 0.109 0.891 25 H 0.168 0.832 26 H 0.080 0.920 27 H 0.093 0.907 28 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -6.539 -3.387 1.614 7.539 hybrid contribution -1.406 0.298 0.122 1.442 sum -7.945 -3.089 1.736 8.699 Atomic orbital electron populations 1.20205 0.85315 1.03720 1.03262 1.23245 0.94944 0.81181 1.01140 1.70316 1.01792 1.27137 1.24029 1.19425 0.91530 0.91695 1.03780 1.20298 0.88239 0.98119 1.14573 1.18336 0.93396 0.92485 0.92015 1.20389 0.92902 1.04387 1.36254 0.90074 1.27115 1.05978 0.92482 0.92745 1.70528 1.30299 1.24259 1.16968 0.83573 0.72991 0.77039 0.77187 1.19780 1.20019 1.19857 1.22835 0.92563 0.92377 1.02415 1.65894 0.96286 1.41775 1.14566 1.18506 0.85046 0.90991 1.15501 1.44296 1.04169 1.06416 1.63496 1.21697 1.00358 0.80869 1.02237 0.90250 0.90981 0.89207 0.87161 0.89053 0.83235 0.92015 0.90717 0.90084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.81 9.95 36.00 0.36 -0.46 15 2 C 0.26 5.01 7.85 -154.74 -1.21 3.80 15 3 N -0.51 -11.96 11.29 -8.20 -0.09 -12.05 15 4 C 0.05 1.40 7.22 -84.68 -0.61 0.78 15 5 C -0.18 -4.89 9.98 -38.26 -0.38 -5.27 15 6 C 0.04 1.19 5.28 -106.68 -0.56 0.63 15 7 C -0.51 -13.33 9.00 -37.77 -0.34 -13.67 15 8 H 0.08 2.06 7.96 -52.49 -0.42 1.64 15 9 C 0.04 0.94 4.94 -17.34 -0.09 0.85 15 10 N -0.80 -20.66 12.35 55.54 0.69 -19.98 15 11 Si 1.07 20.89 30.00 -169.99 -5.10 15.79 15 12 H -0.27 -5.30 7.11 56.52 0.40 -4.90 15 13 H -0.27 -5.12 7.11 56.52 0.40 -4.72 15 14 H -0.27 -5.14 7.11 56.52 0.40 -4.74 15 15 C 0.07 1.83 9.13 -16.76 -0.15 1.67 15 16 N -0.47 -12.22 10.35 -11.63 -0.12 -12.34 15 17 C 0.13 3.18 8.00 -155.39 -1.24 1.93 15 18 N -0.49 -9.82 3.19 -120.19 -0.38 -10.20 15 19 C 0.09 1.32 10.76 59.84 0.64 1.96 15 20 H 0.08 0.84 8.14 -51.93 -0.42 0.41 15 21 H 0.07 0.69 7.64 -51.93 -0.40 0.29 15 22 H 0.09 1.02 8.14 -51.93 -0.42 0.60 15 23 H 0.11 2.84 8.06 -52.49 -0.42 2.41 15 24 H 0.30 7.98 6.72 -40.82 -0.27 7.70 15 25 H 0.15 3.88 6.55 -52.49 -0.34 3.54 15 26 H 0.06 0.79 8.14 -51.93 -0.42 0.37 15 27 H 0.07 0.79 7.60 -51.93 -0.39 0.40 15 28 H 0.08 1.22 8.14 -51.93 -0.42 0.80 15 LS Contribution 247.71 15.07 3.73 3.73 Total: -1.00 -31.41 247.71 -7.60 -39.01 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -2.74 Total: 3.81 kcal Atomic # 6 Polarization: -4.18 SS G_CDS: -3.59 Total: -7.77 kcal Atomic # 7 Polarization: -54.66 SS G_CDS: 0.09 Total: -54.57 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.10 Total: 15.79 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -31.41 -7.60 -39.01 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214450335.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.049 kcal (2) G-P(sol) polarization free energy of solvation -31.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds