Wall clock time and date at job start Mon Mar 30 2020 02:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30053 * 124.91915 * 2 1 4 4 C 1.35840 * 109.42981 * 180.02562 * 3 2 1 5 5 C 1.39242 * 133.64990 * 180.40314 * 4 3 2 6 6 C 1.40762 * 117.97437 * 180.11660 * 5 4 3 7 7 C 1.41375 * 120.49161 * 179.74051 * 6 5 4 8 8 H 1.08001 * 120.00637 * 26.25159 * 7 6 5 9 9 C 1.39884 * 119.99581 * 206.25358 * 7 6 5 10 10 N 1.30878 * 119.99985 * 25.12364 * 9 7 6 11 11 Si 1.86805 * 120.00066 * 205.11966 * 9 7 6 12 12 H 1.48501 * 109.47095 * 180.02562 * 11 9 7 13 13 H 1.48504 * 109.46862 * 300.00001 * 11 9 7 14 14 H 1.48494 * 109.47181 * 60.00006 * 11 9 7 15 15 C 1.41060 * 119.01046 * 359.46489 * 6 5 4 16 16 N 1.31186 * 121.00673 * 0.25055 * 15 6 5 17 17 C 1.32710 * 121.94071 * 0.02562 * 16 15 6 18 18 N 1.36183 * 124.92257 * 180.02562 * 2 1 3 19 19 C 1.46496 * 126.22681 * 0.02562 * 18 2 1 20 20 H 1.09005 * 109.46959 * 90.02325 * 1 2 3 21 21 H 1.09005 * 109.47181 * 210.01631 * 1 2 3 22 22 H 1.08994 * 109.47424 * 330.02342 * 1 2 3 23 23 H 1.07998 * 121.01351 * 359.88345 * 5 4 3 24 24 H 0.96993 * 120.00038 * 5.82917 * 10 9 7 25 25 H 1.07999 * 119.49861 * 180.27386 * 15 6 5 26 26 H 1.09003 * 109.47134 * 269.97368 * 19 18 2 27 27 H 1.09000 * 109.47475 * 29.97090 * 19 18 2 28 28 H 1.08993 * 109.47445 * 149.97873 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2514 1.0664 0.0000 4 6 3.5605 0.7036 -0.0006 5 6 4.7558 1.4178 0.0063 6 6 5.9602 0.6894 0.0004 7 6 7.2045 1.3606 0.0014 8 1 7.2824 2.3532 0.4198 9 6 8.3348 0.7390 -0.5397 10 7 8.1975 -0.1881 -1.4532 11 14 10.0402 1.2323 0.0416 12 1 11.0605 0.4316 -0.6817 13 1 10.2585 2.6754 -0.2327 14 1 10.1574 0.9825 1.5006 15 6 5.9072 -0.7202 -0.0005 16 7 4.7582 -1.3533 -0.0009 17 6 3.5998 -0.7057 -0.0010 18 7 2.2866 -1.1166 -0.0005 19 6 1.8133 -2.5030 -0.0016 20 1 -0.3633 -0.0004 -1.0277 21 1 -0.3634 -0.8899 0.5141 22 1 -0.3634 0.8901 0.5134 23 1 4.7586 2.4978 0.0120 24 1 7.3199 -0.3851 -1.8162 25 1 6.8266 -1.2869 -0.0004 26 1 1.6959 -2.8477 1.0258 27 1 0.8535 -2.5589 -0.5154 28 1 2.5380 -3.1340 -0.5159 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214450335.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:14 Heat of formation + Delta-G solvation = 45.262919 kcal Electronic energy + Delta-G solvation = -13937.451414 eV Core-core repulsion = 11566.695099 eV Total energy + Delta-G solvation = -2370.756316 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.91102 -39.28027 -35.93709 -35.19025 -32.42795 -32.09262 -28.78562 -28.11921 -26.68693 -23.42172 -23.22862 -20.91709 -20.01655 -18.54779 -17.69243 -16.99969 -16.60080 -15.73274 -15.37770 -14.51919 -14.43103 -14.17297 -14.05811 -13.79715 -13.58769 -13.37233 -13.10998 -12.87371 -12.55110 -12.04320 -11.87073 -11.54539 -11.41428 -10.88455 -9.96286 -9.56960 -9.31553 -9.16087 -6.52963 0.11636 0.69277 1.55454 1.65462 1.67409 1.85920 1.96010 2.33914 2.60800 3.33835 3.38569 3.56418 3.85000 4.21717 4.38087 4.40019 4.45799 4.61037 4.64640 4.73220 4.79689 5.03381 5.27187 5.34852 5.48431 5.66849 5.84489 5.89635 6.35619 6.48759 6.69610 7.01565 7.23654 7.93674 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.064575 B = 0.007551 C = 0.006952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 433.503257 B = 3706.990702 C = 4026.733954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.286 3.714 3 N -0.552 5.552 4 C 0.035 3.965 5 C -0.210 4.210 6 C 0.028 3.972 7 C -0.534 4.534 8 H 0.081 0.919 9 C 0.008 3.992 10 N -0.810 5.810 11 Si 1.123 2.877 12 H -0.269 1.269 13 H -0.258 1.258 14 H -0.260 1.260 15 C 0.049 3.951 16 N -0.474 5.474 17 C 0.105 3.895 18 N -0.487 5.487 19 C 0.082 3.918 20 H 0.107 0.893 21 H 0.111 0.889 22 H 0.100 0.900 23 H 0.105 0.895 24 H 0.280 0.720 25 H 0.146 0.854 26 H 0.081 0.919 27 H 0.124 0.876 28 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.513 -3.514 2.195 10.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.021 3.979 3 N -0.277 5.277 4 C -0.083 4.083 5 C -0.240 4.240 6 C 0.021 3.979 7 C -0.564 4.564 8 H 0.099 0.901 9 C -0.208 4.208 10 N -0.432 5.432 11 Si 0.939 3.061 12 H -0.193 1.193 13 H -0.182 1.182 14 H -0.185 1.185 15 C -0.122 4.122 16 N -0.186 5.186 17 C -0.125 4.125 18 N -0.184 5.184 19 C -0.058 4.058 20 H 0.125 0.875 21 H 0.130 0.870 22 H 0.119 0.881 23 H 0.123 0.877 24 H 0.092 0.908 25 H 0.163 0.837 26 H 0.100 0.900 27 H 0.142 0.858 28 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.352 -4.174 1.976 9.544 hybrid contribution -1.139 0.487 -0.003 1.239 sum -9.491 -3.686 1.973 10.371 Atomic orbital electron populations 1.20607 0.79689 1.06253 1.05766 1.24715 0.97519 0.79804 0.95879 1.70349 1.00737 1.29324 1.27304 1.19711 0.92621 0.92585 1.03365 1.20419 0.89213 0.98093 1.16279 1.18568 0.93939 0.93027 0.92330 1.20624 0.93623 1.04811 1.37308 0.90134 1.28617 1.09377 0.91283 0.91548 1.70643 1.29156 1.25339 1.18100 0.82933 0.68198 0.77644 0.77341 1.19307 1.18189 1.18478 1.22705 0.92852 0.92173 1.04439 1.65876 0.96616 1.41815 1.14249 1.18883 0.86666 0.91128 1.15812 1.44727 1.02150 1.08977 1.62527 1.22131 1.02120 0.77424 1.04175 0.87464 0.87048 0.88094 0.87679 0.90828 0.83684 0.90039 0.85785 0.91182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.25 9.95 71.24 0.71 -0.54 15 2 C 0.29 10.24 7.85 137.89 1.08 11.32 15 3 N -0.55 -25.69 11.29 -179.86 -2.03 -27.72 15 4 C 0.04 1.88 7.22 39.44 0.28 2.17 15 5 C -0.21 -11.82 9.98 23.13 0.23 -11.59 15 6 C 0.03 1.57 5.28 -21.20 -0.11 1.46 15 7 C -0.53 -29.02 9.00 23.44 0.21 -28.81 15 8 H 0.08 4.25 7.96 -2.91 -0.02 4.22 15 9 C 0.01 0.40 4.94 85.23 0.42 0.82 15 10 N -0.81 -43.14 12.35 21.82 0.27 -42.87 15 11 Si 1.12 41.80 30.00 68.60 2.06 43.86 15 12 H -0.27 -9.76 7.11 99.48 0.71 -9.05 15 13 H -0.26 -8.85 7.11 99.48 0.71 -8.14 15 14 H -0.26 -9.12 7.11 99.48 0.71 -8.41 15 15 C 0.05 2.69 9.13 85.48 0.78 3.47 15 16 N -0.47 -25.08 10.35 -190.72 -1.97 -27.06 15 17 C 0.10 5.26 8.00 133.90 1.07 6.33 15 18 N -0.49 -18.59 3.19 -534.17 -1.71 -20.30 15 19 C 0.08 2.06 10.76 127.77 1.37 3.43 15 20 H 0.11 1.62 8.14 -2.38 -0.02 1.60 15 21 H 0.11 1.35 7.64 -2.38 -0.02 1.33 15 22 H 0.10 1.82 8.14 -2.39 -0.02 1.80 15 23 H 0.11 5.76 8.06 -2.91 -0.02 5.74 15 24 H 0.28 15.77 6.72 -92.71 -0.62 15.15 15 25 H 0.15 7.93 6.55 -2.91 -0.02 7.91 15 26 H 0.08 1.76 8.14 -2.39 -0.02 1.74 15 27 H 0.12 1.90 7.60 -2.39 -0.02 1.88 15 28 H 0.07 1.94 8.14 -2.39 -0.02 1.92 15 Total: -1.00 -72.33 247.71 3.99 -68.34 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: 1.32 Total: 17.69 kcal Atomic # 6 Polarization: -18.00 SS G_CDS: 6.05 Total: -11.95 kcal Atomic # 7 Polarization: -112.50 SS G_CDS: -5.44 Total: -117.95 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 2.06 Total: 43.86 kcal Total: -72.33 3.99 -68.34 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214450335.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.607 kcal (2) G-P(sol) polarization free energy of solvation -72.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds