Wall clock time and date at job start Mon Mar 30 2020 02:48:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50693 * 109.47362 * 2 1 4 4 N 1.32159 * 125.95249 * 90.03170 * 3 2 1 5 5 C 1.33380 * 110.10228 * 179.97438 * 4 3 2 6 6 N 1.33694 * 131.36685 * 180.02562 * 5 4 3 7 7 C 1.31491 * 121.06282 * 179.97438 * 6 5 4 8 8 C 1.39992 * 120.39620 * 0.02562 * 7 6 5 9 9 C 1.35877 * 119.17623 * 359.97438 * 8 7 6 10 10 N 1.36292 * 119.02808 * 0.02562 * 9 8 7 11 11 C 1.38417 * 132.62226 * 180.02562 * 10 9 8 12 12 C 1.39831 * 126.93765 * 359.96152 * 11 10 9 13 13 H 1.08004 * 119.99813 * 141.25427 * 12 11 10 14 14 C 1.39910 * 120.00366 * 321.25764 * 12 11 10 15 15 N 1.31008 * 120.00672 * 156.52707 * 14 12 11 16 16 Si 1.86805 * 119.99845 * 336.52717 * 14 12 11 17 17 H 1.48498 * 109.46876 * 95.39535 * 16 14 12 18 18 H 1.48489 * 109.47456 * 215.40206 * 16 14 12 19 19 H 1.48502 * 109.47082 * 335.40376 * 16 14 12 20 20 H 1.09000 * 109.47092 * 59.99425 * 1 2 3 21 21 H 1.08995 * 109.47420 * 179.97438 * 1 2 3 22 22 H 1.09005 * 109.46693 * 299.99889 * 1 2 3 23 23 H 1.09005 * 109.46693 * 240.00111 * 2 1 3 24 24 H 1.09000 * 109.47092 * 120.00575 * 2 1 3 25 25 H 1.07992 * 119.80072 * 180.26879 * 7 6 5 26 26 H 1.07999 * 120.41153 * 180.02562 * 8 7 6 27 27 H 1.08000 * 120.48408 * 179.97438 * 9 8 7 28 28 H 0.96997 * 120.00526 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2916 2.1521 1.0698 5 6 2.7197 3.3616 0.7055 6 7 3.0954 4.4210 1.4294 7 6 3.4895 5.5335 0.8498 8 6 3.5231 5.6315 -0.5463 9 6 3.1440 4.5626 -1.2946 10 7 2.7406 3.4236 -0.6641 11 6 2.3059 2.1961 -1.1335 12 6 2.1678 1.8085 -2.4699 13 1 2.4339 0.8062 -2.7717 14 6 1.6852 2.7190 -3.4162 15 7 1.9702 2.5584 -4.6848 16 14 0.6342 4.1638 -2.8709 17 1 1.4938 5.3614 -2.6915 18 1 -0.3961 4.4440 -3.9029 19 1 -0.0306 3.8347 -1.5844 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8901 23 1 1.8933 -0.5138 -0.8901 24 1 1.8933 -0.5139 0.8899 25 1 3.7927 6.3754 1.4544 26 1 3.8472 6.5450 -1.0226 27 1 3.1614 4.6151 -2.3732 28 1 1.6359 3.1899 -5.3408 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214450480.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:24 Heat of formation + Delta-G solvation = 87.817011 kcal Electronic energy + Delta-G solvation = -14466.407984 eV Core-core repulsion = 12097.496952 eV Total energy + Delta-G solvation = -2368.911032 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.56238 -37.25252 -34.24075 -33.25090 -32.42902 -29.78183 -28.97539 -25.42487 -24.03443 -22.26324 -21.62055 -19.17809 -18.35049 -16.83762 -16.25863 -15.43404 -14.98745 -14.78364 -13.74083 -13.45519 -13.07246 -13.04992 -12.33111 -12.06606 -11.95742 -11.60596 -11.12900 -10.94998 -10.80615 -10.53292 -10.32491 -10.22411 -9.55964 -9.25510 -8.74591 -8.02805 -7.19468 -7.11777 -4.55227 1.48404 2.03734 2.71262 2.89988 3.03168 3.52996 3.66869 3.71400 4.62129 4.63113 4.69912 5.21196 5.46328 5.61331 5.83789 5.90348 6.18656 6.20333 6.32998 6.45780 6.54700 6.63670 6.75753 6.84270 6.96270 7.34008 7.44565 7.73905 8.06583 8.14235 8.47013 8.77299 9.15058 9.85043 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.021143 B = 0.018967 C = 0.011539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.983962 B = 1475.912011 C = 2426.000478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.015 4.015 3 C -0.030 4.030 4 N -0.443 5.443 5 C 0.268 3.732 6 N -0.424 5.424 7 C 0.098 3.902 8 C -0.234 4.234 9 C 0.113 3.887 10 N -0.428 5.428 11 C 0.154 3.846 12 C -0.442 4.442 13 H 0.113 0.887 14 C 0.090 3.910 15 N -0.798 5.798 16 Si 0.860 3.140 17 H -0.253 1.253 18 H -0.271 1.271 19 H -0.253 1.253 20 H 0.057 0.943 21 H 0.047 0.953 22 H 0.047 0.953 23 H 0.073 0.927 24 H 0.061 0.939 25 H 0.160 0.840 26 H 0.142 0.858 27 H 0.158 0.842 28 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.244 3.554 1.360 3.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.053 4.053 3 C -0.167 4.167 4 N -0.163 5.163 5 C -0.073 4.073 6 N -0.134 5.134 7 C -0.089 4.089 8 C -0.259 4.259 9 C -0.017 4.017 10 N -0.113 5.113 11 C 0.043 3.957 12 C -0.476 4.476 13 H 0.130 0.870 14 C -0.130 4.130 15 N -0.423 5.423 16 Si 0.684 3.316 17 H -0.179 1.179 18 H -0.197 1.197 19 H -0.176 1.176 20 H 0.076 0.924 21 H 0.067 0.933 22 H 0.067 0.933 23 H 0.092 0.908 24 H 0.080 0.920 25 H 0.177 0.823 26 H 0.160 0.840 27 H 0.176 0.824 28 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.450 3.023 2.869 4.192 hybrid contribution -0.375 1.351 -1.803 2.284 sum -0.825 4.374 1.065 4.577 Atomic orbital electron populations 1.21683 0.95946 1.00275 1.01937 1.19492 0.94873 0.89492 1.01455 1.21121 1.10746 0.97978 0.86890 1.69608 1.16542 0.99414 1.30756 1.20941 1.14287 0.94853 0.77237 1.67312 1.10421 0.98149 1.37567 1.22542 0.99353 0.94931 0.92033 1.21342 1.09744 0.99259 0.95524 1.22005 0.94779 0.85323 0.99609 1.44114 1.45104 1.12004 1.10052 1.18899 0.99547 0.81781 0.95473 1.18245 1.40229 1.01427 0.87728 0.86968 1.25923 0.94735 0.97819 0.94540 1.69778 1.34694 1.35453 1.02402 0.87271 0.81752 0.81670 0.80877 1.17852 1.19679 1.17604 0.92417 0.93349 0.93340 0.90848 0.92046 0.82283 0.83983 0.82438 0.90257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 9.89 37.16 0.37 -2.16 15 2 C -0.01 -0.29 6.30 -27.89 -0.18 -0.47 15 3 C -0.03 -0.72 6.46 -81.78 -0.53 -1.25 15 4 N -0.44 -11.48 11.23 -9.69 -0.11 -11.59 15 5 C 0.27 6.81 8.90 -321.93 -2.86 3.95 15 6 N -0.42 -9.72 10.47 -13.60 -0.14 -9.86 15 7 C 0.10 1.80 11.26 -17.04 -0.19 1.61 15 8 C -0.23 -4.16 10.07 -39.77 -0.40 -4.56 15 9 C 0.11 2.42 7.53 -16.42 -0.12 2.29 15 10 N -0.43 -10.51 2.48 -61.70 -0.15 -10.66 15 11 C 0.15 3.89 5.46 -83.62 -0.46 3.43 15 12 C -0.44 -11.17 9.37 -38.36 -0.36 -11.53 15 13 H 0.11 2.91 7.92 -52.48 -0.42 2.50 15 14 C 0.09 2.18 4.93 -17.28 -0.09 2.10 15 15 N -0.80 -19.60 13.94 55.55 0.77 -18.83 15 16 Si 0.86 19.00 24.45 -169.99 -4.16 14.84 15 17 H -0.25 -5.15 5.52 56.52 0.31 -4.83 15 18 H -0.27 -5.75 7.11 56.52 0.40 -5.35 15 19 H -0.25 -6.18 7.11 56.52 0.40 -5.78 15 20 H 0.06 1.10 8.14 -51.93 -0.42 0.68 15 21 H 0.05 0.71 8.14 -51.93 -0.42 0.29 15 22 H 0.05 0.89 8.14 -51.93 -0.42 0.47 15 23 H 0.07 1.39 7.84 -51.93 -0.41 0.98 15 24 H 0.06 1.13 8.14 -51.93 -0.42 0.71 15 25 H 0.16 2.15 8.06 -52.49 -0.42 1.73 15 26 H 0.14 1.91 8.06 -52.49 -0.42 1.49 15 27 H 0.16 3.24 5.58 -52.49 -0.29 2.94 15 28 H 0.29 6.39 8.30 -40.82 -0.34 6.05 15 LS Contribution 240.79 15.07 3.63 3.63 Total: -1.00 -29.34 240.79 -7.85 -37.19 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: -2.88 Total: 1.86 kcal Atomic # 6 Polarization: -1.77 SS G_CDS: -4.82 Total: -6.58 kcal Atomic # 7 Polarization: -51.31 SS G_CDS: 0.37 Total: -50.94 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -4.16 Total: 14.84 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -29.34 -7.85 -37.19 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214450480.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.004 kcal (2) G-P(sol) polarization free energy of solvation -29.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds