Wall clock time and date at job start Mon Mar 30 2020 02:48:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50693 * 109.47362 * 2 1 4 4 N 1.32159 * 125.95249 * 90.03170 * 3 2 1 5 5 C 1.33380 * 110.10228 * 179.97438 * 4 3 2 6 6 N 1.33694 * 131.36685 * 180.02562 * 5 4 3 7 7 C 1.31491 * 121.06282 * 179.97438 * 6 5 4 8 8 C 1.39992 * 120.39620 * 0.02562 * 7 6 5 9 9 C 1.35877 * 119.17623 * 359.97438 * 8 7 6 10 10 N 1.36292 * 119.02808 * 0.02562 * 9 8 7 11 11 C 1.38417 * 132.62226 * 180.02562 * 10 9 8 12 12 C 1.39831 * 126.93765 * 359.96152 * 11 10 9 13 13 H 1.08004 * 119.99813 * 141.25427 * 12 11 10 14 14 C 1.39910 * 120.00366 * 321.25764 * 12 11 10 15 15 N 1.31008 * 120.00672 * 156.52707 * 14 12 11 16 16 Si 1.86805 * 119.99845 * 336.52717 * 14 12 11 17 17 H 1.48498 * 109.46876 * 95.39535 * 16 14 12 18 18 H 1.48489 * 109.47456 * 215.40206 * 16 14 12 19 19 H 1.48502 * 109.47082 * 335.40376 * 16 14 12 20 20 H 1.09000 * 109.47092 * 59.99425 * 1 2 3 21 21 H 1.08995 * 109.47420 * 179.97438 * 1 2 3 22 22 H 1.09005 * 109.46693 * 299.99889 * 1 2 3 23 23 H 1.09005 * 109.46693 * 240.00111 * 2 1 3 24 24 H 1.09000 * 109.47092 * 120.00575 * 2 1 3 25 25 H 1.07992 * 119.80072 * 180.26879 * 7 6 5 26 26 H 1.07999 * 120.41153 * 180.02562 * 8 7 6 27 27 H 1.08000 * 120.48408 * 179.97438 * 9 8 7 28 28 H 0.96997 * 120.00526 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2916 2.1521 1.0698 5 6 2.7197 3.3616 0.7055 6 7 3.0954 4.4210 1.4294 7 6 3.4895 5.5335 0.8498 8 6 3.5231 5.6315 -0.5463 9 6 3.1440 4.5626 -1.2946 10 7 2.7406 3.4236 -0.6641 11 6 2.3059 2.1961 -1.1335 12 6 2.1678 1.8085 -2.4699 13 1 2.4339 0.8062 -2.7717 14 6 1.6852 2.7190 -3.4162 15 7 1.9702 2.5584 -4.6848 16 14 0.6342 4.1638 -2.8709 17 1 1.4938 5.3614 -2.6915 18 1 -0.3961 4.4440 -3.9029 19 1 -0.0306 3.8347 -1.5844 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8901 23 1 1.8933 -0.5138 -0.8901 24 1 1.8933 -0.5139 0.8899 25 1 3.7927 6.3754 1.4544 26 1 3.8472 6.5450 -1.0226 27 1 3.1614 4.6151 -2.3732 28 1 1.6359 3.1899 -5.3408 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214450480.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:24 Heat of formation + Delta-G solvation = 70.710373 kcal Electronic energy + Delta-G solvation = -14467.149783 eV Core-core repulsion = 12097.496952 eV Total energy + Delta-G solvation = -2369.652831 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.32227 -38.92925 -36.02545 -34.97718 -34.05384 -31.50354 -30.68823 -27.16889 -25.63622 -23.96133 -23.32285 -20.92012 -20.14944 -18.54195 -17.94252 -17.21193 -16.64509 -16.48039 -15.32085 -15.15327 -14.70976 -14.62388 -14.07066 -13.67167 -13.56730 -13.39653 -12.81426 -12.72686 -12.38876 -12.20938 -12.01859 -11.83956 -11.31734 -10.98322 -10.49822 -9.70823 -9.01110 -8.95241 -6.42491 -0.14116 0.38273 0.98139 1.12914 1.24684 1.77537 1.92318 1.96688 2.83727 2.90779 3.01358 3.62744 3.90480 4.13474 4.35663 4.38393 4.62571 4.65166 4.75570 4.89183 4.98963 5.07434 5.12841 5.28552 5.44466 5.61488 5.69991 6.07174 6.15044 6.34215 6.62456 7.03075 7.37448 8.09089 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.021143 B = 0.018967 C = 0.011539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.983962 B = 1475.912011 C = 2426.000478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.016 4.016 3 C -0.046 4.046 4 N -0.482 5.482 5 C 0.258 3.742 6 N -0.464 5.464 7 C 0.132 3.868 8 C -0.207 4.207 9 C 0.076 3.924 10 N -0.431 5.431 11 C 0.124 3.876 12 C -0.464 4.464 13 H 0.088 0.912 14 C 0.069 3.931 15 N -0.828 5.828 16 Si 0.903 3.097 17 H -0.219 1.219 18 H -0.258 1.258 19 H -0.293 1.293 20 H 0.038 0.962 21 H 0.084 0.916 22 H 0.040 0.960 23 H 0.075 0.925 24 H 0.073 0.927 25 H 0.220 0.780 26 H 0.201 0.799 27 H 0.163 0.837 28 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.305 6.431 1.903 6.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.054 4.054 3 C -0.182 4.182 4 N -0.204 5.204 5 C -0.084 4.084 6 N -0.176 5.176 7 C -0.055 4.055 8 C -0.230 4.230 9 C -0.054 4.054 10 N -0.115 5.115 11 C 0.012 3.988 12 C -0.499 4.499 13 H 0.106 0.894 14 C -0.148 4.148 15 N -0.455 5.455 16 Si 0.726 3.274 17 H -0.143 1.143 18 H -0.182 1.182 19 H -0.219 1.219 20 H 0.057 0.943 21 H 0.103 0.897 22 H 0.059 0.941 23 H 0.093 0.907 24 H 0.092 0.908 25 H 0.236 0.764 26 H 0.218 0.782 27 H 0.180 0.820 28 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 0.106 5.890 3.363 6.783 hybrid contribution -0.385 0.692 -1.797 1.964 sum -0.279 6.581 1.565 6.771 Atomic orbital electron populations 1.21601 0.94504 1.02211 1.00552 1.19619 0.96096 0.87661 1.02041 1.21762 1.10448 0.99407 0.86566 1.69590 1.18879 1.00480 1.31491 1.21439 1.13520 0.95505 0.77889 1.67502 1.13191 0.99018 1.37894 1.23778 0.93969 0.94511 0.93193 1.22119 1.05827 0.99781 0.95289 1.22577 0.96600 0.85623 1.00622 1.44224 1.44679 1.12569 1.10071 1.18958 1.01306 0.82944 0.95547 1.18074 1.42378 1.00927 0.88494 0.89438 1.26277 0.94891 0.99293 0.94365 1.69777 1.35928 1.36840 1.02999 0.86651 0.81053 0.81090 0.78645 1.14284 1.18233 1.21927 0.94292 0.89692 0.94094 0.90678 0.90828 0.76359 0.78191 0.81999 0.89249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.80 9.89 71.98 0.71 -4.08 15 2 C -0.02 -0.65 6.30 29.85 0.19 -0.46 15 3 C -0.05 -2.34 6.46 42.94 0.28 -2.06 15 4 N -0.48 -25.56 11.23 -184.56 -2.07 -27.63 15 5 C 0.26 13.05 8.90 261.18 2.32 15.37 15 6 N -0.46 -20.07 10.47 -196.93 -2.06 -22.13 15 7 C 0.13 4.11 11.26 85.17 0.96 5.07 15 8 C -0.21 -6.17 10.07 22.15 0.22 -5.94 15 9 C 0.08 3.02 7.53 83.45 0.63 3.65 15 10 N -0.43 -21.06 2.48 -349.12 -0.87 -21.92 15 11 C 0.12 6.44 5.46 38.92 0.21 6.65 15 12 C -0.46 -24.51 9.37 23.06 0.22 -24.29 15 13 H 0.09 4.87 7.92 -2.91 -0.02 4.85 15 14 C 0.07 3.41 4.93 85.22 0.42 3.83 15 15 N -0.83 -41.25 13.94 21.83 0.30 -40.95 15 16 Si 0.90 38.83 24.45 68.60 1.68 40.50 15 17 H -0.22 -8.08 5.52 99.48 0.55 -7.53 15 18 H -0.26 -10.35 7.11 99.48 0.71 -9.64 15 19 H -0.29 -14.59 7.11 99.48 0.71 -13.89 15 20 H 0.04 1.54 8.14 -2.39 -0.02 1.52 15 21 H 0.08 2.44 8.14 -2.39 -0.02 2.42 15 22 H 0.04 1.52 8.14 -2.38 -0.02 1.50 15 23 H 0.07 2.99 7.84 -2.38 -0.02 2.97 15 24 H 0.07 2.77 8.14 -2.39 -0.02 2.75 15 25 H 0.22 4.14 8.06 -2.91 -0.02 4.11 15 26 H 0.20 3.68 8.06 -2.91 -0.02 3.66 15 27 H 0.16 6.26 5.58 -2.91 -0.02 6.24 15 28 H 0.30 13.18 8.30 -92.71 -0.77 12.41 15 Total: -1.00 -67.17 240.79 4.15 -63.02 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: 1.01 Total: 11.39 kcal Atomic # 6 Polarization: -8.43 SS G_CDS: 6.16 Total: -2.27 kcal Atomic # 7 Polarization: -107.95 SS G_CDS: -4.69 Total: -112.64 kcal Atomic # 14 Polarization: 38.83 SS G_CDS: 1.68 Total: 40.50 kcal Total: -67.17 4.15 -63.02 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214450480.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.730 kcal (2) G-P(sol) polarization free energy of solvation -67.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds