Wall clock time and date at job start Mon Mar 30 2020 02:48:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50699 * 109.47045 * 2 1 4 4 C 1.34911 * 125.68031 * 124.99934 * 3 2 1 5 5 N 1.37264 * 107.02419 * 180.24260 * 4 3 2 6 6 C 1.35960 * 131.90933 * 180.43280 * 5 4 3 7 7 C 1.39662 * 118.70685 * 179.63535 * 6 5 4 8 8 C 1.41365 * 120.96555 * 179.75510 * 7 6 5 9 9 H 1.07999 * 120.00218 * 23.23975 * 8 7 6 10 10 C 1.39786 * 119.99691 * 203.23864 * 8 7 6 11 11 N 1.30944 * 120.00076 * 16.71128 * 10 8 7 12 12 Si 1.86800 * 119.99815 * 196.71535 * 10 8 7 13 13 H 1.48504 * 109.47143 * 59.99720 * 12 10 8 14 14 H 1.48497 * 109.47027 * 180.02562 * 12 10 8 15 15 H 1.48506 * 109.47018 * 299.99992 * 12 10 8 16 16 C 1.46581 * 118.06296 * 359.72853 * 7 6 5 17 17 N 1.30766 * 119.42384 * 0.02562 * 16 7 6 18 18 C 1.34343 * 121.58363 * 359.97438 * 17 16 7 19 19 N 1.32610 * 130.90474 * 179.97438 * 18 17 16 20 20 H 1.08996 * 109.47020 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.46699 * 299.99942 * 1 2 3 22 22 H 1.08998 * 109.47074 * 59.99302 * 1 2 3 23 23 H 1.09001 * 109.46699 * 240.00058 * 2 1 3 24 24 H 1.08997 * 109.47400 * 120.00267 * 2 1 3 25 25 H 1.07993 * 126.48450 * 359.97438 * 4 3 2 26 26 H 1.08000 * 120.64520 * 359.36083 * 6 5 4 27 27 H 0.96996 * 120.00365 * 180.02562 * 11 10 8 28 28 H 1.08005 * 120.28724 * 179.97438 * 16 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.8873 1.9532 0.8977 5 7 3.0790 3.2648 0.5412 6 6 3.8390 4.2520 1.0855 7 6 3.8354 5.5115 0.4819 8 6 4.6038 6.5737 1.0107 9 1 5.4652 6.3625 1.6269 10 6 4.2486 7.8975 0.7359 11 7 3.0523 8.1734 0.2805 12 14 5.4807 9.2729 1.0182 13 1 6.6822 9.0416 0.1767 14 1 4.8631 10.5732 0.6537 15 1 5.8761 9.2972 2.4495 16 6 3.0121 5.6996 -0.7162 17 7 2.3132 4.6961 -1.1794 18 6 2.3305 3.4921 -0.5837 19 7 1.7046 2.3634 -0.8885 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 1.8933 -0.5138 -0.8900 24 1 1.8935 -0.5138 0.8899 25 1 3.3326 1.4449 1.7400 26 1 4.4306 4.0671 1.9700 27 1 2.8059 9.0919 0.0895 28 1 2.9823 6.6589 -1.2115 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214450649.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:27 Heat of formation + Delta-G solvation = 60.030953 kcal Electronic energy + Delta-G solvation = -13761.834828 eV Core-core repulsion = 11391.718903 eV Total energy + Delta-G solvation = -2370.115926 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.26162 -38.78475 -35.93735 -35.19861 -33.81610 -31.53993 -29.43327 -27.26461 -25.39718 -23.67234 -23.48512 -21.00850 -19.83174 -18.46622 -17.66518 -17.06205 -16.75432 -16.06721 -15.14883 -15.01223 -14.76345 -14.46140 -13.87279 -13.36570 -13.33216 -13.20125 -12.83753 -12.71028 -12.29416 -12.19483 -12.01637 -11.80095 -11.19051 -11.02409 -10.37212 -9.61419 -8.98680 -8.74048 -6.59007 0.18516 0.58074 1.42839 1.50646 1.58308 2.03257 2.11029 2.21992 2.59343 3.05662 3.26477 3.90367 4.02836 4.15626 4.38868 4.48690 4.53075 4.73057 4.88249 4.92284 5.03493 5.09320 5.25341 5.36124 5.44949 5.78868 5.81248 6.03919 6.09922 6.47141 6.56911 7.05777 7.39829 8.06272 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.078667 B = 0.006771 C = 0.006423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 355.846474 B = 4134.065763 C = 4358.607773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.029 4.029 3 C 0.033 3.967 4 C -0.140 4.140 5 N -0.336 5.336 6 C -0.169 4.169 7 C 0.027 3.973 8 C -0.442 4.442 9 H 0.104 0.896 10 C 0.039 3.961 11 N -0.812 5.812 12 Si 1.001 2.999 13 H -0.255 1.255 14 H -0.266 1.266 15 H -0.256 1.256 16 C 0.175 3.825 17 N -0.490 5.490 18 C 0.279 3.721 19 N -0.524 5.524 20 H 0.086 0.914 21 H 0.041 0.959 22 H 0.036 0.964 23 H 0.079 0.921 24 H 0.104 0.896 25 H 0.201 0.799 26 H 0.160 0.840 27 H 0.305 0.695 28 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.773 -3.703 3.456 5.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.067 4.067 3 C -0.105 4.105 4 C -0.275 4.275 5 N -0.006 5.006 6 C -0.299 4.299 7 C 0.020 3.980 8 C -0.470 4.470 9 H 0.122 0.878 10 C -0.180 4.180 11 N -0.436 5.436 12 Si 0.820 3.180 13 H -0.179 1.179 14 H -0.190 1.190 15 H -0.180 1.180 16 C -0.017 4.017 17 N -0.201 5.201 18 C -0.066 4.066 19 N -0.249 5.249 20 H 0.105 0.895 21 H 0.061 0.939 22 H 0.055 0.945 23 H 0.098 0.902 24 H 0.123 0.877 25 H 0.218 0.782 26 H 0.178 0.822 27 H 0.116 0.884 28 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 1.497 -3.721 2.035 4.498 hybrid contribution 1.238 0.876 1.358 2.036 sum 2.736 -2.845 3.393 5.205 Atomic orbital electron populations 1.21615 0.94592 1.02318 1.00894 1.19948 0.96269 0.86612 1.03857 1.21367 0.98722 0.97635 0.92809 1.22757 1.12773 0.83418 1.08537 1.43280 1.27724 1.09914 1.19719 1.21970 1.12322 0.89325 1.06273 1.19531 0.93708 0.92615 0.92149 1.19717 1.10503 0.89803 1.26989 0.87807 1.27006 0.97098 1.02670 0.91239 1.69741 1.19216 1.24724 1.29913 0.84924 0.77762 0.74981 0.80297 1.17918 1.19016 1.17966 1.25263 0.89142 0.95158 0.92134 1.67444 1.23315 0.97631 1.31756 1.21722 1.00660 0.94406 0.89860 1.70231 1.27329 0.97913 1.29453 0.89511 0.93940 0.94513 0.90247 0.87739 0.78175 0.82232 0.88357 0.79925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.77 9.88 71.98 0.71 -3.06 15 2 C -0.03 -0.84 6.49 29.85 0.19 -0.64 15 3 C 0.03 1.37 6.33 41.52 0.26 1.64 15 4 C -0.14 -5.80 11.62 83.08 0.97 -4.84 15 5 N -0.34 -16.72 2.93 -354.09 -1.04 -17.76 15 6 C -0.17 -8.20 10.89 84.40 0.92 -7.28 15 7 C 0.03 1.33 5.71 -19.99 -0.11 1.22 15 8 C -0.44 -20.25 9.10 23.41 0.21 -20.04 15 9 H 0.10 4.38 7.90 -2.91 -0.02 4.36 15 10 C 0.04 1.62 5.23 85.20 0.45 2.07 15 11 N -0.81 -36.32 10.86 21.80 0.24 -36.08 15 12 Si 1.00 31.47 29.59 68.60 2.03 33.50 15 13 H -0.26 -7.86 7.11 99.48 0.71 -7.15 15 14 H -0.27 -7.99 7.11 99.48 0.71 -7.28 15 15 H -0.26 -7.80 7.11 99.48 0.71 -7.09 15 16 C 0.17 9.06 10.15 87.03 0.88 9.95 15 17 N -0.49 -27.10 10.43 -191.81 -2.00 -29.10 15 18 C 0.28 15.26 8.88 261.28 2.32 17.58 15 19 N -0.52 -26.89 11.28 -187.56 -2.12 -29.00 15 20 H 0.09 1.74 8.14 -2.39 -0.02 1.72 15 21 H 0.04 1.22 8.14 -2.39 -0.02 1.20 15 22 H 0.04 1.18 8.14 -2.39 -0.02 1.16 15 23 H 0.08 2.16 8.14 -2.39 -0.02 2.14 15 24 H 0.10 2.30 8.10 -2.39 -0.02 2.28 15 25 H 0.20 6.41 8.06 -2.91 -0.02 6.38 15 26 H 0.16 6.82 8.06 -2.91 -0.02 6.79 15 27 H 0.30 12.11 8.30 -92.71 -0.77 11.34 15 28 H 0.18 9.06 6.25 -2.91 -0.02 9.04 15 Total: -1.00 -62.04 249.93 5.08 -56.96 By element: Atomic # 1 Polarization: 23.74 SS G_CDS: 1.17 Total: 24.90 kcal Atomic # 6 Polarization: -10.21 SS G_CDS: 6.80 Total: -3.41 kcal Atomic # 7 Polarization: -107.03 SS G_CDS: -4.92 Total: -111.95 kcal Atomic # 14 Polarization: 31.47 SS G_CDS: 2.03 Total: 33.50 kcal Total: -62.04 5.08 -56.96 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214450649.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.990 kcal (2) G-P(sol) polarization free energy of solvation -62.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.959 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds