Wall clock time and date at job start Mon Mar 30 2020 02:32:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31653 * 118.71158 * 2 1 4 4 C 1.32933 * 120.56534 * 179.97438 * 3 2 1 5 5 N 1.37261 * 133.78722 * 180.02562 * 4 3 2 6 6 H 0.97003 * 124.60823 * 359.97438 * 5 4 3 7 7 C 1.35891 * 110.77124 * 180.02562 * 5 4 3 8 8 C 1.38941 * 109.27173 * 0.02562 * 7 5 4 9 9 C 1.40881 * 126.99801 * 180.02562 * 8 7 5 10 10 H 1.08006 * 119.99535 * 179.97438 * 9 8 7 11 11 C 1.39771 * 120.00441 * 359.97438 * 9 8 7 12 12 N 1.31025 * 119.99766 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 120.00349 * 179.97438 * 11 9 8 14 14 H 1.48505 * 109.46852 * 359.97438 * 13 11 9 15 15 H 1.48505 * 109.46947 * 119.99610 * 13 11 9 16 16 H 1.48497 * 109.47269 * 239.99645 * 13 11 9 17 17 C 1.40880 * 118.36424 * 0.02562 * 4 3 2 18 18 C 1.38902 * 118.91792 * 359.97438 * 17 4 3 19 19 C 1.50706 * 120.73832 * 179.97438 * 18 17 4 20 20 N 1.32017 * 118.70920 * 180.25684 * 2 1 3 21 21 H 1.08995 * 109.47411 * 89.99752 * 1 2 3 22 22 H 1.09003 * 109.47340 * 210.00066 * 1 2 3 23 23 H 1.08997 * 109.47069 * 329.99642 * 1 2 3 24 24 H 1.07993 * 125.36017 * 179.97438 * 7 5 4 25 25 H 0.97001 * 120.00418 * 180.02562 * 12 11 9 26 26 H 1.09001 * 109.46953 * 90.00074 * 19 18 17 27 27 H 1.09000 * 109.47318 * 209.99672 * 19 18 17 28 28 H 1.09000 * 109.47161 * 330.00303 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1394 1.1547 0.0000 4 6 3.4681 1.1977 0.0005 5 7 4.3853 2.2188 0.0011 6 1 4.1596 3.1622 0.0009 7 6 5.6526 1.7282 0.0009 8 6 5.6068 0.3395 -0.0004 9 6 6.7033 -0.5449 -0.0005 10 1 6.5364 -1.6120 -0.0012 11 6 8.0073 -0.0416 0.0002 12 7 8.2098 1.2529 0.0006 13 14 9.4613 -1.2144 0.0008 14 1 8.9675 -2.6149 0.0009 15 1 10.2866 -0.9801 -1.2113 16 1 10.2855 -0.9804 1.2137 17 6 4.1771 -0.0197 0.0005 18 6 3.4645 -1.2120 0.0005 19 6 4.1813 -2.5377 -0.0001 20 7 2.1411 -1.1579 -0.0052 21 1 -0.3634 0.0000 -1.0276 22 1 -0.3634 -0.8900 0.5139 23 1 -0.3633 0.8899 0.5139 24 1 6.5534 2.3239 0.0009 25 1 9.1147 1.6023 0.0007 26 1 4.3544 -2.8576 1.0274 27 1 3.5710 -3.2805 -0.5138 28 1 5.1368 -2.4340 -0.5142 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214450961.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:19 Heat of formation + Delta-G solvation = 44.147461 kcal Electronic energy + Delta-G solvation = -14052.901352 eV Core-core repulsion = 11682.096666 eV Total energy + Delta-G solvation = -2370.804685 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.25753 -39.22402 -35.88157 -34.89402 -32.51880 -31.34602 -29.73125 -28.13812 -26.48058 -23.47998 -22.63182 -21.45025 -19.64298 -18.07259 -17.22983 -16.77566 -16.34266 -15.88465 -15.01130 -14.41448 -14.32003 -14.17948 -14.03273 -13.49158 -13.22673 -13.04316 -12.96332 -12.84707 -12.50362 -12.21115 -11.66455 -11.49008 -11.20419 -10.83788 -9.93974 -9.64743 -8.73228 -8.47641 -6.10949 0.17852 0.61701 1.41596 1.47967 1.61545 2.20924 2.21449 2.33600 3.02685 3.35379 3.51377 3.66797 4.12119 4.29312 4.56483 4.74009 4.78882 4.85480 4.86368 4.90994 5.02755 5.21972 5.35139 5.59502 5.65127 5.93367 6.25530 6.29513 6.61216 6.97545 7.07025 7.14731 7.56017 8.50995 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.044555 B = 0.009345 C = 0.007768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.281205 B = 2995.682135 C = 3603.516754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.298 3.702 3 N -0.565 5.565 4 C 0.269 3.731 5 N -0.547 5.547 6 H 0.414 0.586 7 C -0.118 4.118 8 C 0.017 3.983 9 C -0.445 4.445 10 H 0.091 0.909 11 C 0.017 3.983 12 N -0.848 5.848 13 Si 0.989 3.011 14 H -0.254 1.254 15 H -0.272 1.272 16 H -0.273 1.273 17 C -0.262 4.262 18 C 0.213 3.787 19 C -0.096 4.096 20 N -0.574 5.574 21 H 0.092 0.908 22 H 0.094 0.906 23 H 0.086 0.914 24 H 0.195 0.805 25 H 0.284 0.716 26 H 0.088 0.912 27 H 0.090 0.910 28 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.457 -2.985 0.016 5.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.028 3.972 3 N -0.289 5.289 4 C 0.026 3.974 5 N -0.154 5.154 6 H 0.251 0.749 7 C -0.242 4.242 8 C 0.010 3.990 9 C -0.477 4.477 10 H 0.109 0.891 11 C -0.193 4.193 12 N -0.478 5.478 13 Si 0.811 3.189 14 H -0.178 1.178 15 H -0.198 1.198 16 H -0.198 1.198 17 C -0.274 4.274 18 C 0.065 3.935 19 C -0.153 4.153 20 N -0.295 5.295 21 H 0.110 0.890 22 H 0.113 0.887 23 H 0.105 0.895 24 H 0.211 0.789 25 H 0.094 0.906 26 H 0.106 0.894 27 H 0.108 0.892 28 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -5.149 -2.620 0.010 5.777 hybrid contribution 1.575 0.611 0.006 1.690 sum -3.574 -2.009 0.016 4.100 Atomic orbital electron populations 1.20483 0.83122 1.04345 1.04274 1.23552 0.98950 0.82268 0.92435 1.67081 1.06552 1.31880 1.23436 1.18770 0.88421 0.88843 1.01318 1.41234 1.04328 1.06747 1.63045 0.74932 1.23410 0.84400 0.95367 1.21040 1.18349 0.88682 0.92405 0.99546 1.19313 0.89745 0.94647 1.43957 0.89144 1.26613 1.02600 0.97146 0.92909 1.69461 1.23856 1.14264 1.40189 0.85006 0.76647 0.78976 0.78254 1.17753 1.19762 1.19774 1.20893 0.97219 0.94620 1.14661 1.21481 0.89038 0.95320 0.87664 1.20820 0.99910 0.90771 1.03823 1.68170 1.08777 1.29609 1.22933 0.88997 0.88705 0.89490 0.78850 0.90568 0.89357 0.89157 0.89937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.79 10.30 71.24 0.73 -1.05 15 2 C 0.30 12.16 7.63 138.72 1.06 13.22 15 3 N -0.57 -25.56 10.36 -185.36 -1.92 -27.48 15 4 C 0.27 13.19 8.45 133.92 1.13 14.32 15 5 N -0.55 -25.20 5.95 -189.45 -1.13 -26.32 15 6 H 0.41 15.91 8.96 -92.71 -0.83 15.08 15 7 C -0.12 -6.03 10.89 84.23 0.92 -5.11 15 8 C 0.02 0.91 6.10 -20.05 -0.12 0.79 15 9 C -0.44 -22.81 8.92 23.29 0.21 -22.60 15 10 H 0.09 4.32 5.35 -2.91 -0.02 4.31 15 11 C 0.02 0.81 5.49 85.18 0.47 1.28 15 12 N -0.85 -42.11 10.34 21.81 0.23 -41.88 15 13 Si 0.99 37.08 29.56 68.60 2.03 39.11 15 14 H -0.25 -9.11 7.11 99.48 0.71 -8.41 15 15 H -0.27 -9.97 7.11 99.48 0.71 -9.27 15 16 H -0.27 -9.98 7.11 99.48 0.71 -9.28 15 17 C -0.26 -13.32 6.18 -20.06 -0.12 -13.44 15 18 C 0.21 9.64 6.85 42.63 0.29 9.93 15 19 C -0.10 -3.52 9.80 71.24 0.70 -2.82 15 20 N -0.57 -24.51 10.27 -175.67 -1.80 -26.31 15 21 H 0.09 2.24 8.14 -2.39 -0.02 2.22 15 22 H 0.09 2.31 8.14 -2.39 -0.02 2.29 15 23 H 0.09 2.20 8.14 -2.39 -0.02 2.18 15 24 H 0.20 10.03 5.69 -2.91 -0.02 10.01 15 25 H 0.28 12.81 8.30 -92.71 -0.77 12.04 15 26 H 0.09 2.97 8.14 -2.39 -0.02 2.95 15 27 H 0.09 2.82 8.14 -2.39 -0.02 2.80 15 28 H 0.08 3.16 5.52 -2.39 -0.01 3.14 15 Total: -1.00 -61.36 242.94 3.04 -58.32 By element: Atomic # 1 Polarization: 29.68 SS G_CDS: 0.38 Total: 30.06 kcal Atomic # 6 Polarization: -10.75 SS G_CDS: 5.26 Total: -5.49 kcal Atomic # 7 Polarization: -117.37 SS G_CDS: -4.63 Total: -122.00 kcal Atomic # 14 Polarization: 37.08 SS G_CDS: 2.03 Total: 39.11 kcal Total: -61.36 3.04 -58.32 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214450961.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.467 kcal (2) G-P(sol) polarization free energy of solvation -61.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds