Wall clock time and date at job start Mon Mar 30 2020 02:44:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.32046 * 118.71233 * 2 1 4 4 C 1.32429 * 121.05173 * 179.97438 * 3 2 1 5 5 C 1.38942 * 118.52014 * 0.25476 * 4 3 2 6 6 C 1.47414 * 134.96269 * 180.44808 * 5 4 3 7 7 C 1.40876 * 127.00478 * 359.24981 * 6 5 4 8 8 H 1.07993 * 120.00143 * 0.28574 * 7 6 5 9 9 C 1.39778 * 119.99596 * 180.28679 * 7 6 5 10 10 N 1.31023 * 120.00339 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 119.99784 * 180.02562 * 9 7 6 12 12 H 1.48506 * 109.47331 * 59.99800 * 11 9 7 13 13 H 1.48494 * 109.47424 * 179.97438 * 11 9 7 14 14 H 1.48506 * 109.47102 * 300.00062 * 11 9 7 15 15 C 1.38945 * 105.98742 * 179.46864 * 6 5 4 16 16 N 1.35886 * 109.27174 * 359.77958 * 15 6 5 17 17 C 1.46498 * 124.61849 * 179.97438 * 16 15 6 18 18 C 1.37262 * 110.76260 * 0.02562 * 16 15 6 19 19 N 1.31635 * 118.71030 * 179.97438 * 2 1 3 20 20 H 1.08992 * 109.47163 * 90.00218 * 1 2 3 21 21 H 1.09001 * 109.47272 * 210.00251 * 1 2 3 22 22 H 1.09005 * 109.47106 * 330.00132 * 1 2 3 23 23 H 1.08002 * 120.73590 * 179.97438 * 4 3 2 24 24 H 0.97005 * 119.99693 * 179.97438 * 10 9 7 25 25 H 1.08000 * 125.36303 * 179.78864 * 15 6 5 26 26 H 1.08996 * 109.47166 * 270.02258 * 17 16 15 27 27 H 1.08999 * 109.47487 * 30.02852 * 17 16 15 28 28 H 1.09002 * 109.46834 * 150.02875 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1413 1.1581 0.0000 4 6 3.4645 1.2122 0.0005 5 6 4.1772 0.0195 -0.0044 6 6 5.6069 -0.3398 0.0026 7 6 6.7034 0.5447 0.0027 8 1 6.5365 1.6116 0.0020 9 6 8.0073 0.0411 0.0038 10 7 8.2098 -1.2534 0.0051 11 14 9.4614 1.2139 0.0047 12 1 9.4063 2.0698 1.2170 13 1 10.7256 0.4349 0.0064 14 1 9.4081 2.0694 -1.2080 15 6 5.6525 -1.7285 0.0038 16 7 4.3852 -2.2189 0.0032 17 6 4.0441 -3.6436 0.0036 18 6 3.4682 -1.1975 0.0010 19 7 2.1393 -1.1545 0.0005 20 1 -0.3633 0.0000 -1.0276 21 1 -0.3634 -0.8900 0.5139 22 1 -0.3633 0.8900 0.5138 23 1 3.9781 2.1622 0.0001 24 1 9.1147 -1.6027 0.0055 25 1 6.5533 -2.3243 0.0052 26 1 3.9606 -3.9975 -1.0239 27 1 4.8244 -4.2039 0.5187 28 1 3.0934 -3.7894 0.5165 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214451046.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:31 Heat of formation + Delta-G solvation = 70.936029 kcal Electronic energy + Delta-G solvation = -13973.190697 eV Core-core repulsion = 11603.547651 eV Total energy + Delta-G solvation = -2369.643046 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.49678 -37.65684 -34.01148 -32.53984 -31.45590 -30.11591 -27.17020 -26.36101 -24.33321 -22.60622 -20.74155 -19.51155 -17.49006 -16.11906 -15.50622 -15.30293 -14.83481 -14.24325 -13.65688 -13.20884 -12.82540 -12.40952 -12.13589 -11.95832 -11.93185 -11.63623 -11.32068 -11.29015 -10.80189 -10.63490 -10.01005 -9.89814 -9.50358 -9.14228 -8.17666 -7.69753 -6.89695 -6.65807 -4.20064 1.95230 2.37134 3.04269 3.09629 3.13156 3.70097 3.99346 4.02951 4.77718 4.92818 5.14205 5.40667 5.53730 5.82689 5.89944 5.98490 6.00929 6.04517 6.10154 6.22619 6.43802 6.76156 7.06028 7.23162 7.43230 7.72101 8.05938 8.11738 8.41224 8.73156 8.93983 8.94780 9.26436 10.31100 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.039103 B = 0.009238 C = 0.007513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.890722 B = 3030.347822 C = 3725.791517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.297 3.703 3 N -0.569 5.569 4 C 0.192 3.808 5 C -0.225 4.225 6 C 0.041 3.959 7 C -0.415 4.415 8 H 0.076 0.924 9 C 0.058 3.942 10 N -0.826 5.826 11 Si 0.922 3.078 12 H -0.267 1.267 13 H -0.281 1.281 14 H -0.267 1.267 15 C -0.096 4.096 16 N -0.448 5.448 17 C 0.089 3.911 18 C 0.285 3.715 19 N -0.547 5.547 20 H 0.070 0.930 21 H 0.071 0.929 22 H 0.075 0.925 23 H 0.153 0.847 24 H 0.278 0.722 25 H 0.200 0.800 26 H 0.055 0.945 27 H 0.075 0.925 28 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.394 -1.218 0.099 4.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.027 3.973 3 N -0.289 5.289 4 C 0.025 3.975 5 C -0.237 4.237 6 C 0.035 3.965 7 C -0.447 4.447 8 H 0.094 0.906 9 C -0.153 4.153 10 N -0.455 5.455 11 Si 0.747 3.253 12 H -0.192 1.192 13 H -0.206 1.206 14 H -0.192 1.192 15 C -0.219 4.219 16 N -0.135 5.135 17 C -0.054 4.054 18 C 0.044 3.956 19 N -0.269 5.269 20 H 0.089 0.911 21 H 0.090 0.910 22 H 0.094 0.906 23 H 0.171 0.829 24 H 0.089 0.911 25 H 0.216 0.784 26 H 0.074 0.926 27 H 0.093 0.907 28 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -5.132 -1.800 0.104 5.440 hybrid contribution 1.704 0.286 -0.043 1.728 sum -3.428 -1.514 0.061 3.748 Atomic orbital electron populations 1.20291 0.87276 1.02653 1.02439 1.22363 0.96584 0.83010 0.95327 1.68169 1.09800 1.29204 1.21721 1.22289 0.88536 0.96986 0.89732 1.20820 0.97304 0.93862 1.11712 1.17957 0.87777 0.91561 0.99242 1.18741 0.89135 0.93863 1.42988 0.90597 1.25712 1.00264 0.95572 0.93798 1.69392 1.23021 1.12835 1.40298 0.86128 0.79249 0.80255 0.79644 1.19228 1.20563 1.19226 1.23502 0.83586 0.95074 1.19693 1.43376 1.05108 1.03636 1.61394 1.21695 1.01580 0.80399 1.01726 1.18364 0.87663 0.88025 1.01578 1.66880 1.07472 1.31087 1.21505 0.91105 0.90993 0.90614 0.82925 0.91139 0.78385 0.92608 0.90672 0.91091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.04 10.30 36.00 0.37 -0.67 15 2 C 0.30 6.26 7.63 -157.12 -1.20 5.06 15 3 N -0.57 -12.45 10.32 -10.60 -0.11 -12.56 15 4 C 0.19 4.36 11.36 -17.03 -0.19 4.17 15 5 C -0.22 -5.67 6.39 -104.92 -0.67 -6.34 15 6 C 0.04 1.10 6.10 -104.90 -0.64 0.46 15 7 C -0.41 -10.79 9.42 -38.01 -0.36 -11.15 15 8 H 0.08 1.87 7.84 -52.49 -0.41 1.46 15 9 C 0.06 1.43 5.49 -17.32 -0.10 1.34 15 10 N -0.83 -20.56 10.34 55.54 0.57 -19.98 15 11 Si 0.92 18.66 29.56 -169.99 -5.02 13.63 15 12 H -0.27 -5.37 7.11 56.52 0.40 -4.97 15 13 H -0.28 -5.56 7.11 56.52 0.40 -5.15 15 14 H -0.27 -5.37 7.11 56.52 0.40 -4.97 15 15 C -0.10 -2.44 10.32 -15.49 -0.16 -2.60 15 16 N -0.45 -10.38 3.13 -122.53 -0.38 -10.76 15 17 C 0.09 1.57 11.03 59.85 0.66 2.23 15 18 C 0.28 6.99 7.90 -155.56 -1.23 5.77 15 19 N -0.55 -12.51 10.36 -9.94 -0.10 -12.61 15 20 H 0.07 0.98 8.14 -51.93 -0.42 0.56 15 21 H 0.07 1.01 8.14 -51.93 -0.42 0.59 15 22 H 0.07 1.05 8.14 -51.93 -0.42 0.62 15 23 H 0.15 3.05 8.06 -52.49 -0.42 2.63 15 24 H 0.28 6.36 8.30 -40.82 -0.34 6.02 15 25 H 0.20 5.07 5.69 -52.49 -0.30 4.77 15 26 H 0.06 0.90 8.14 -51.93 -0.42 0.48 15 27 H 0.07 1.17 8.13 -51.93 -0.42 0.74 15 28 H 0.07 1.18 8.13 -51.93 -0.42 0.75 15 LS Contribution 249.69 15.07 3.76 3.76 Total: -1.00 -29.15 249.69 -7.60 -36.75 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: -2.80 Total: 3.52 kcal Atomic # 6 Polarization: 1.77 SS G_CDS: -3.51 Total: -1.74 kcal Atomic # 7 Polarization: -55.90 SS G_CDS: -0.02 Total: -55.92 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -5.02 Total: 13.63 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -29.15 -7.60 -36.75 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214451046.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.686 kcal (2) G-P(sol) polarization free energy of solvation -29.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds