Wall clock time and date at job start Mon Mar 30 2020 02:44:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.32046 * 118.71233 * 2 1 4 4 C 1.32429 * 121.05173 * 179.97438 * 3 2 1 5 5 C 1.38942 * 118.52014 * 0.25476 * 4 3 2 6 6 C 1.47414 * 134.96269 * 180.44808 * 5 4 3 7 7 C 1.40876 * 127.00478 * 359.24981 * 6 5 4 8 8 H 1.07993 * 120.00143 * 0.28574 * 7 6 5 9 9 C 1.39778 * 119.99596 * 180.28679 * 7 6 5 10 10 N 1.31023 * 120.00339 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 119.99784 * 180.02562 * 9 7 6 12 12 H 1.48506 * 109.47331 * 59.99800 * 11 9 7 13 13 H 1.48494 * 109.47424 * 179.97438 * 11 9 7 14 14 H 1.48506 * 109.47102 * 300.00062 * 11 9 7 15 15 C 1.38945 * 105.98742 * 179.46864 * 6 5 4 16 16 N 1.35886 * 109.27174 * 359.77958 * 15 6 5 17 17 C 1.46498 * 124.61849 * 179.97438 * 16 15 6 18 18 C 1.37262 * 110.76260 * 0.02562 * 16 15 6 19 19 N 1.31635 * 118.71030 * 179.97438 * 2 1 3 20 20 H 1.08992 * 109.47163 * 90.00218 * 1 2 3 21 21 H 1.09001 * 109.47272 * 210.00251 * 1 2 3 22 22 H 1.09005 * 109.47106 * 330.00132 * 1 2 3 23 23 H 1.08002 * 120.73590 * 179.97438 * 4 3 2 24 24 H 0.97005 * 119.99693 * 179.97438 * 10 9 7 25 25 H 1.08000 * 125.36303 * 179.78864 * 15 6 5 26 26 H 1.08996 * 109.47166 * 270.02258 * 17 16 15 27 27 H 1.08999 * 109.47487 * 30.02852 * 17 16 15 28 28 H 1.09002 * 109.46834 * 150.02875 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1413 1.1581 0.0000 4 6 3.4645 1.2122 0.0005 5 6 4.1772 0.0195 -0.0044 6 6 5.6069 -0.3398 0.0026 7 6 6.7034 0.5447 0.0027 8 1 6.5365 1.6116 0.0020 9 6 8.0073 0.0411 0.0038 10 7 8.2098 -1.2534 0.0051 11 14 9.4614 1.2139 0.0047 12 1 9.4063 2.0698 1.2170 13 1 10.7256 0.4349 0.0064 14 1 9.4081 2.0694 -1.2080 15 6 5.6525 -1.7285 0.0038 16 7 4.3852 -2.2189 0.0032 17 6 4.0441 -3.6436 0.0036 18 6 3.4682 -1.1975 0.0010 19 7 2.1393 -1.1545 0.0005 20 1 -0.3633 0.0000 -1.0276 21 1 -0.3634 -0.8900 0.5139 22 1 -0.3633 0.8900 0.5138 23 1 3.9781 2.1622 0.0001 24 1 9.1147 -1.6027 0.0055 25 1 6.5533 -2.3243 0.0052 26 1 3.9606 -3.9975 -1.0239 27 1 4.8244 -4.2039 0.5187 28 1 3.0934 -3.7894 0.5165 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214451046.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:30 Heat of formation + Delta-G solvation = 54.707334 kcal Electronic energy + Delta-G solvation = -13973.894426 eV Core-core repulsion = 11603.547651 eV Total energy + Delta-G solvation = -2370.346775 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.25410 -39.38382 -35.84241 -34.27686 -33.13224 -31.72028 -28.90591 -27.94619 -26.11899 -24.33042 -22.44344 -21.34372 -19.27202 -17.92044 -17.27451 -17.03242 -16.52161 -15.93014 -15.13563 -14.83964 -14.52757 -14.10152 -13.66909 -13.51309 -13.21558 -13.17257 -12.99020 -12.95881 -12.37842 -12.30390 -11.81571 -11.66359 -11.31326 -10.92967 -9.93743 -9.47566 -8.77689 -8.49602 -6.12816 0.17996 0.59611 1.43167 1.45652 1.56410 2.01594 2.18683 2.30046 3.02838 3.40522 3.50080 3.51218 4.02868 4.28356 4.35807 4.45546 4.60073 4.64172 4.83390 4.85000 4.87248 5.15486 5.19994 5.48049 5.64770 5.88688 6.23834 6.27666 6.57140 6.87898 7.03695 7.06361 7.51729 8.48528 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.039103 B = 0.009238 C = 0.007513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.890722 B = 3030.347822 C = 3725.791517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.293 3.707 3 N -0.571 5.571 4 C 0.194 3.806 5 C -0.264 4.264 6 C 0.012 3.988 7 C -0.449 4.449 8 H 0.078 0.922 9 C 0.019 3.981 10 N -0.847 5.847 11 Si 0.993 3.007 12 H -0.264 1.264 13 H -0.271 1.271 14 H -0.264 1.264 15 C -0.112 4.112 16 N -0.451 5.451 17 C 0.084 3.916 18 C 0.270 3.730 19 N -0.555 5.555 20 H 0.091 0.909 21 H 0.087 0.913 22 H 0.094 0.906 23 H 0.173 0.827 24 H 0.285 0.715 25 H 0.194 0.806 26 H 0.071 0.929 27 H 0.093 0.907 28 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.953 -0.886 0.081 5.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.024 3.976 3 N -0.291 5.291 4 C 0.026 3.974 5 C -0.276 4.276 6 C 0.005 3.995 7 C -0.481 4.481 8 H 0.096 0.904 9 C -0.190 4.190 10 N -0.476 5.476 11 Si 0.814 3.186 12 H -0.188 1.188 13 H -0.196 1.196 14 H -0.188 1.188 15 C -0.235 4.235 16 N -0.138 5.138 17 C -0.057 4.057 18 C 0.028 3.972 19 N -0.279 5.279 20 H 0.110 0.890 21 H 0.106 0.894 22 H 0.113 0.887 23 H 0.190 0.810 24 H 0.096 0.904 25 H 0.210 0.790 26 H 0.089 0.911 27 H 0.112 0.888 28 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -5.715 -1.507 0.085 5.911 hybrid contribution 1.764 0.166 -0.040 1.772 sum -3.951 -1.341 0.045 4.173 Atomic orbital electron populations 1.20484 0.83110 1.04364 1.04270 1.23581 0.99003 0.82358 0.92705 1.68324 1.09175 1.29615 1.21990 1.22651 0.89065 0.97207 0.88466 1.21083 0.97166 0.95321 1.14028 1.18373 0.88807 0.92502 0.99806 1.19041 0.90186 0.94111 1.44746 0.90423 1.26577 1.02452 0.97241 0.92760 1.69447 1.24051 1.14197 1.39937 0.85063 0.75800 0.78060 0.79643 1.18828 1.19554 1.18835 1.23383 0.84397 0.94972 1.20728 1.43575 1.04222 1.05376 1.60649 1.21980 1.02771 0.77805 1.03186 1.18700 0.88509 0.88364 1.01610 1.67063 1.06449 1.31796 1.22554 0.89011 0.89434 0.88745 0.81043 0.90409 0.78984 0.91083 0.88798 0.89996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.76 10.30 71.23 0.73 -1.03 15 2 C 0.29 11.84 7.63 138.72 1.06 12.90 15 3 N -0.57 -24.28 10.32 -187.46 -1.93 -26.22 15 4 C 0.19 8.81 11.36 84.77 0.96 9.77 15 5 C -0.26 -13.53 6.39 -20.06 -0.13 -13.66 15 6 C 0.01 0.65 6.10 -20.05 -0.12 0.53 15 7 C -0.45 -23.86 9.42 23.29 0.22 -23.64 15 8 H 0.08 3.92 7.84 -2.91 -0.02 3.89 15 9 C 0.02 0.95 5.49 85.19 0.47 1.42 15 10 N -0.85 -42.55 10.34 21.81 0.23 -42.32 15 11 Si 0.99 37.94 29.56 68.60 2.03 39.97 15 12 H -0.26 -9.86 7.11 99.48 0.71 -9.15 15 13 H -0.27 -9.84 7.11 99.48 0.71 -9.14 15 14 H -0.26 -9.86 7.11 99.48 0.71 -9.15 15 15 C -0.11 -5.81 10.32 84.23 0.87 -4.94 15 16 N -0.45 -21.06 3.13 -541.58 -1.70 -22.76 15 17 C 0.08 2.88 11.03 127.77 1.41 4.29 15 18 C 0.27 13.28 7.90 133.90 1.06 14.33 15 19 N -0.56 -24.85 10.36 -185.37 -1.92 -26.77 15 20 H 0.09 2.20 8.14 -2.39 -0.02 2.18 15 21 H 0.09 2.16 8.14 -2.39 -0.02 2.14 15 22 H 0.09 2.27 8.14 -2.38 -0.02 2.25 15 23 H 0.17 6.84 8.06 -2.91 -0.02 6.82 15 24 H 0.29 13.03 8.30 -92.70 -0.77 12.26 15 25 H 0.19 10.11 5.69 -2.91 -0.02 10.10 15 26 H 0.07 2.21 8.14 -2.39 -0.02 2.19 15 27 H 0.09 2.83 8.13 -2.39 -0.02 2.81 15 28 H 0.08 2.61 8.13 -2.39 -0.02 2.59 15 Total: -1.00 -62.72 249.69 4.40 -58.32 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: 1.17 Total: 19.80 kcal Atomic # 6 Polarization: -6.55 SS G_CDS: 6.53 Total: -0.02 kcal Atomic # 7 Polarization: -112.75 SS G_CDS: -5.33 Total: -118.07 kcal Atomic # 14 Polarization: 37.94 SS G_CDS: 2.03 Total: 39.97 kcal Total: -62.72 4.40 -58.32 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214451046.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.029 kcal (2) G-P(sol) polarization free energy of solvation -62.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds