Wall clock time and date at job start Mon Mar 30 2020 02:32:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.32319 * 120.61124 * 2 1 4 4 C 1.32031 * 121.44381 * 180.02562 * 3 2 1 5 5 N 1.31693 * 122.15187 * 359.97438 * 4 3 2 6 6 C 1.32783 * 120.29983 * 0.02562 * 5 4 3 7 7 C 1.47342 * 134.76542 * 180.02562 * 6 5 4 8 8 C 1.41000 * 126.89939 * 0.02562 * 7 6 5 9 9 H 1.07993 * 119.99792 * 359.97438 * 8 7 6 10 10 C 1.39775 * 119.99496 * 179.97438 * 8 7 6 11 11 N 1.31028 * 120.00398 * 0.02562 * 10 8 7 12 12 Si 1.86805 * 119.99363 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47317 * 359.97438 * 12 10 8 14 14 H 1.48500 * 109.46774 * 120.00496 * 12 10 8 15 15 H 1.48508 * 109.46991 * 240.00089 * 12 10 8 16 16 C 1.39009 * 106.19781 * 179.97438 * 7 6 5 17 17 N 1.35521 * 109.33412 * 359.77188 * 16 7 6 18 18 C 1.46498 * 124.71646 * 180.02562 * 17 16 7 19 19 C 1.37888 * 110.56740 * 0.37792 * 17 16 7 20 20 H 1.08998 * 109.46662 * 269.99132 * 1 2 3 21 21 H 1.08999 * 109.46936 * 29.98307 * 1 2 3 22 22 H 1.08995 * 109.47177 * 149.98995 * 1 2 3 23 23 H 1.07996 * 118.92173 * 179.97438 * 4 3 2 24 24 H 0.97001 * 119.99783 * 179.97438 * 11 10 8 25 25 H 1.07993 * 125.32746 * 180.02562 * 16 7 6 26 26 H 1.09002 * 109.47821 * 270.43031 * 18 17 16 27 27 H 1.09004 * 109.46954 * 30.42572 * 18 17 16 28 28 H 1.09000 * 109.47192 * 150.42696 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1809 1.1388 0.0000 4 6 3.5010 1.1580 -0.0005 5 7 4.2180 0.0533 -0.0005 6 6 3.6210 -1.1328 -0.0006 7 6 4.0890 -2.5299 -0.0001 8 6 5.4271 -2.9745 0.0010 9 1 6.2344 -2.2572 0.0012 10 6 5.7085 -4.3436 0.0018 11 7 4.7289 -5.2139 0.0010 12 14 7.4813 -4.9326 0.0040 13 1 8.3925 -3.7601 0.0040 14 1 7.7288 -5.7527 1.2170 15 1 7.7316 -5.7535 -1.2080 16 6 2.9464 -3.3216 0.0002 17 7 1.8493 -2.5260 0.0050 18 6 0.4670 -3.0110 0.0073 19 6 2.2150 -1.1965 -0.0004 20 1 -0.3632 -0.0002 1.0277 21 1 -0.3633 0.8901 -0.5136 22 1 -0.3633 -0.8898 -0.5140 23 1 4.0095 2.1107 -0.0009 24 1 4.9243 -6.1640 0.0012 25 1 2.9349 -4.4014 0.0009 26 1 0.1239 -3.1360 -1.0198 27 1 0.4189 -3.9689 0.5254 28 1 -0.1705 -2.2893 0.5180 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214451125.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:08 Heat of formation + Delta-G solvation = 72.232589 kcal Electronic energy + Delta-G solvation = -14128.071265 eV Core-core repulsion = 11758.484442 eV Total energy + Delta-G solvation = -2369.586823 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.60887 -37.54164 -34.29133 -33.17851 -30.80083 -29.77327 -27.91743 -26.06309 -24.37779 -22.38296 -21.22868 -19.31304 -17.34095 -16.27276 -15.86810 -14.93332 -14.87510 -14.51192 -13.64489 -13.46963 -12.99158 -12.56874 -12.54062 -12.20831 -11.52468 -11.39397 -11.35613 -11.06134 -10.96543 -10.23747 -10.19501 -9.85915 -9.78053 -9.26373 -8.07499 -7.41879 -7.06243 -6.63457 -4.12586 1.91369 2.29857 3.03893 3.14410 3.22322 3.84556 3.98101 4.05602 4.79937 4.92209 5.25719 5.33922 5.36902 5.45905 5.63180 5.66442 5.80583 5.89561 6.00027 6.12127 6.33656 6.79261 7.08952 7.17361 7.56122 7.67240 8.03216 8.18353 8.38064 8.72897 8.94613 8.97890 9.32931 10.34402 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.039515 B = 0.009806 C = 0.007902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.420692 B = 2854.582326 C = 3542.554990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.140 3.860 3 N -0.521 5.521 4 C 0.205 3.795 5 N -0.471 5.471 6 C 0.096 3.904 7 C 0.031 3.969 8 C -0.401 4.401 9 H 0.081 0.919 10 C 0.053 3.947 11 N -0.831 5.831 12 Si 0.923 3.077 13 H -0.262 1.262 14 H -0.276 1.276 15 H -0.276 1.276 16 C -0.072 4.072 17 N -0.457 5.457 18 C 0.079 3.921 19 C -0.014 4.014 20 H 0.069 0.931 21 H 0.073 0.927 22 H 0.069 0.931 23 H 0.177 0.823 24 H 0.276 0.724 25 H 0.201 0.799 26 H 0.057 0.943 27 H 0.076 0.924 28 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.761 1.371 0.086 6.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.016 4.016 3 N -0.237 5.237 4 C -0.085 4.085 5 N -0.184 5.184 6 C -0.048 4.048 7 C 0.025 3.975 8 C -0.433 4.433 9 H 0.099 0.901 10 C -0.157 4.157 11 N -0.461 5.461 12 Si 0.748 3.252 13 H -0.186 1.186 14 H -0.202 1.202 15 H -0.202 1.202 16 C -0.199 4.199 17 N -0.140 5.140 18 C -0.064 4.064 19 C -0.130 4.130 20 H 0.088 0.912 21 H 0.092 0.908 22 H 0.088 0.912 23 H 0.194 0.806 24 H 0.087 0.913 25 H 0.217 0.783 26 H 0.076 0.924 27 H 0.095 0.905 28 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -6.459 1.788 0.091 6.703 hybrid contribution 0.317 -1.069 -0.007 1.115 sum -6.142 0.719 0.085 6.185 Atomic orbital electron populations 1.20733 0.89916 1.02778 1.02185 1.20348 0.95643 0.86126 0.99476 1.67847 1.10999 1.28225 1.16661 1.24045 0.86164 0.96122 1.02159 1.67528 1.41522 0.97817 1.11523 1.20644 0.88839 0.93062 1.02304 1.17987 0.93689 0.84456 1.01335 1.18931 0.91516 0.91627 1.41262 0.90070 1.25726 0.99516 0.96413 0.94039 1.69392 1.32726 1.02875 1.41114 0.85994 0.81923 0.79101 0.78152 1.18591 1.20203 1.20207 1.23555 0.81984 0.97291 1.17099 1.43294 1.06162 1.02968 1.61558 1.21940 0.82017 1.00616 1.01808 1.19557 0.96976 0.86392 1.10116 0.91189 0.90835 0.91203 0.80631 0.91313 0.78257 0.92447 0.90491 0.90789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.48 9.04 36.01 0.33 -1.15 15 2 C 0.14 2.89 6.85 -82.09 -0.56 2.33 15 3 N -0.52 -11.07 10.35 -10.67 -0.11 -11.18 15 4 C 0.20 4.45 12.27 -92.04 -1.13 3.32 15 5 N -0.47 -11.86 10.49 -11.17 -0.12 -11.97 15 6 C 0.10 2.52 7.54 -82.81 -0.62 1.90 15 7 C 0.03 0.86 6.10 -104.86 -0.64 0.22 15 8 C -0.40 -11.04 9.43 -37.96 -0.36 -11.40 15 9 H 0.08 2.25 7.84 -52.49 -0.41 1.84 15 10 C 0.05 1.36 5.49 -17.32 -0.10 1.26 15 11 N -0.83 -20.92 10.33 55.54 0.57 -20.34 15 12 Si 0.92 19.41 29.56 -169.99 -5.02 14.38 15 13 H -0.26 -5.54 7.11 56.52 0.40 -5.14 15 14 H -0.28 -5.69 7.11 56.52 0.40 -5.29 15 15 H -0.28 -5.70 7.11 56.52 0.40 -5.30 15 16 C -0.07 -1.79 10.31 -15.64 -0.16 -1.95 15 17 N -0.46 -9.88 3.14 -120.74 -0.38 -10.26 15 18 C 0.08 1.21 9.79 59.85 0.59 1.79 15 19 C -0.01 -0.33 6.74 -83.90 -0.57 -0.89 15 20 H 0.07 0.94 8.14 -51.93 -0.42 0.51 15 21 H 0.07 1.01 8.14 -51.93 -0.42 0.58 15 22 H 0.07 0.93 5.62 -51.93 -0.29 0.64 15 23 H 0.18 3.12 8.06 -52.49 -0.42 2.70 15 24 H 0.28 6.34 8.30 -40.82 -0.34 6.00 15 25 H 0.20 5.00 5.67 -52.49 -0.30 4.70 15 26 H 0.06 0.79 8.14 -51.93 -0.42 0.36 15 27 H 0.08 1.07 8.13 -51.93 -0.42 0.64 15 28 H 0.07 0.97 5.72 -51.93 -0.30 0.67 15 LS Contribution 242.52 15.07 3.65 3.65 Total: -1.00 -30.21 242.52 -7.17 -37.39 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -2.55 Total: 2.91 kcal Atomic # 6 Polarization: -1.36 SS G_CDS: -3.22 Total: -4.58 kcal Atomic # 7 Polarization: -53.72 SS G_CDS: -0.03 Total: -53.75 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -5.02 Total: 14.38 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -30.21 -7.17 -37.39 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214451125.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.620 kcal (2) G-P(sol) polarization free energy of solvation -30.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds