Wall clock time and date at job start Mon Mar 30 2020 02:34:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38657 * 125.50165 * 2 1 4 4 C 1.38860 * 107.64692 * 179.97438 * 3 2 1 5 5 N 1.33985 * 132.57743 * 179.97438 * 4 3 2 6 6 C 1.31215 * 120.81589 * 180.02562 * 5 4 3 7 7 C 1.40249 * 120.27557 * 359.92615 * 6 5 4 8 8 C 1.50706 * 120.26904 * 180.02562 * 7 6 5 9 9 C 1.50700 * 109.47169 * 270.02302 * 8 7 6 10 10 H 1.08005 * 119.99992 * 0.02562 * 9 8 7 11 11 C 1.37875 * 120.00235 * 180.02562 * 9 8 7 12 12 N 1.31517 * 119.99963 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 120.00263 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.46953 * 60.00196 * 13 11 9 15 15 H 1.48502 * 109.47068 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.46906 * 299.99921 * 13 11 9 17 17 C 1.35522 * 119.45738 * 0.03728 * 7 6 5 18 18 N 1.36527 * 119.12213 * 0.02562 * 17 7 6 19 19 N 1.31405 * 125.50440 * 179.68949 * 2 1 3 20 20 H 1.09001 * 109.46953 * 89.99960 * 1 2 3 21 21 H 1.09000 * 109.47318 * 209.99558 * 1 2 3 22 22 H 1.09000 * 109.47161 * 330.00189 * 1 2 3 23 23 H 1.08002 * 126.17970 * 0.02562 * 3 2 1 24 24 H 1.07999 * 119.86368 * 179.97438 * 6 5 4 25 25 H 1.08998 * 109.47407 * 30.02312 * 8 7 6 26 26 H 1.08999 * 109.46605 * 150.02370 * 8 7 6 27 27 H 0.96991 * 120.00260 * 179.97438 * 12 11 9 28 28 H 1.08002 * 120.44031 * 180.02562 * 17 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3123 1.1288 0.0000 4 6 3.6340 0.7031 0.0006 5 7 4.7994 1.3642 0.0004 6 6 5.9401 0.7158 0.0006 7 6 5.9562 -0.6866 0.0026 8 6 7.2665 -1.4313 0.0034 9 6 7.7032 -1.6810 -1.4171 10 1 7.0933 -1.3347 -2.2384 11 6 8.8815 -2.3515 -1.6684 12 7 9.6245 -2.7727 -0.6683 13 14 9.4233 -2.6604 -3.4292 14 1 9.5929 -1.3621 -4.1299 15 1 10.7143 -3.3942 -3.4284 16 1 8.3936 -3.4698 -4.1291 17 6 4.7840 -1.3666 0.0035 18 7 3.6108 -0.6684 0.0020 19 7 2.2702 -1.0697 0.0058 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3634 -0.8900 0.5138 22 1 -0.3633 0.8900 0.5138 23 1 1.9728 2.1541 0.0004 24 1 6.8705 1.2642 0.0000 25 1 8.0221 -0.8365 0.5166 26 1 7.1425 -2.3840 0.5182 27 1 10.4532 -3.2447 -0.8450 28 1 4.7779 -2.4466 0.0055 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214451691.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:03 Heat of formation + Delta-G solvation = 99.897197 kcal Electronic energy + Delta-G solvation = -13573.463525 eV Core-core repulsion = 11205.076329 eV Total energy + Delta-G solvation = -2368.387195 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.84178 -37.95084 -34.11038 -33.43387 -31.92695 -29.14192 -28.94347 -26.36379 -24.01045 -23.30973 -21.51922 -19.81771 -17.68139 -16.71120 -16.55664 -15.58433 -15.22331 -14.62022 -13.58490 -13.40568 -13.26600 -12.87201 -12.59556 -12.45505 -12.10833 -11.77999 -11.57181 -11.06000 -10.80760 -10.67976 -10.52936 -10.05043 -9.64090 -9.31383 -8.67386 -8.59298 -7.41415 -6.22154 -4.28705 1.02429 1.44405 2.50962 2.89657 3.22872 3.27876 3.30870 3.91562 4.27803 4.31326 4.48450 5.04657 5.12952 5.21303 5.37489 5.54440 5.57956 5.73917 5.85186 5.96911 6.17243 6.24809 6.55728 6.78689 7.02616 7.25266 7.33783 7.71368 7.84494 8.04740 8.06092 8.75235 9.37406 10.86903 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.051177 B = 0.006514 C = 0.006298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.988447 B = 4297.605814 C = 4444.678438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.099 3.901 3 C -0.287 4.287 4 C 0.257 3.743 5 N -0.482 5.482 6 C 0.195 3.805 7 C -0.133 4.133 8 C 0.066 3.934 9 C -0.526 4.526 10 H 0.057 0.943 11 C 0.064 3.936 12 N -0.889 5.889 13 Si 0.898 3.102 14 H -0.275 1.275 15 H -0.285 1.285 16 H -0.276 1.276 17 C 0.131 3.869 18 N -0.299 5.299 19 N -0.328 5.328 20 H 0.078 0.922 21 H 0.073 0.927 22 H 0.079 0.921 23 H 0.153 0.847 24 H 0.179 0.821 25 H 0.043 0.957 26 H 0.037 0.963 27 H 0.266 0.734 28 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.719 4.787 1.780 11.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.058 4.058 3 C -0.318 4.318 4 C 0.027 3.973 5 N -0.193 5.193 6 C 0.012 3.988 7 C -0.139 4.139 8 C 0.027 3.973 9 C -0.563 4.563 10 H 0.075 0.925 11 C -0.139 4.139 12 N -0.527 5.527 13 Si 0.725 3.275 14 H -0.200 1.200 15 H -0.211 1.211 16 H -0.201 1.201 17 C -0.002 4.002 18 N -0.068 5.068 19 N -0.155 5.155 20 H 0.097 0.903 21 H 0.092 0.908 22 H 0.098 0.902 23 H 0.170 0.830 24 H 0.196 0.804 25 H 0.061 0.939 26 H 0.055 0.945 27 H 0.076 0.924 28 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -10.900 4.319 1.833 11.867 hybrid contribution 0.595 -0.267 -1.029 1.218 sum -10.305 4.052 0.804 11.102 Atomic orbital electron populations 1.20189 0.86238 1.03313 1.03060 1.22100 0.96937 0.90413 0.96357 1.20604 0.87715 0.99667 1.23804 1.20747 0.94829 0.80836 1.00917 1.68249 0.96359 1.37319 1.17376 1.23566 0.95744 0.91990 0.87516 1.21354 0.97418 0.95129 0.99976 1.18232 0.85556 0.95076 0.98392 1.20982 1.06591 1.37730 0.91045 0.92457 1.24976 0.96235 0.95164 0.97498 1.69919 1.13965 1.37896 1.30912 0.86556 0.77966 0.78607 0.84381 1.20004 1.21057 1.20111 1.21970 0.80500 0.99492 0.98286 1.47086 1.06169 1.07321 1.46253 1.77724 0.83110 1.21524 1.33184 0.90338 0.90820 0.90239 0.82967 0.80366 0.93885 0.94500 0.92445 0.80796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.74 10.43 36.01 0.38 -0.36 15 2 C 0.10 1.59 7.16 -82.62 -0.59 1.00 15 3 C -0.29 -4.86 10.83 -39.20 -0.42 -5.28 15 4 C 0.26 5.00 7.92 -155.51 -1.23 3.77 15 5 N -0.48 -9.21 10.48 -12.21 -0.13 -9.34 15 6 C 0.19 3.57 10.96 -17.06 -0.19 3.38 15 7 C -0.13 -2.62 5.05 -104.83 -0.53 -3.15 15 8 C 0.07 1.49 5.12 -29.03 -0.15 1.34 15 9 C -0.53 -13.45 9.09 -34.44 -0.31 -13.76 15 10 H 0.06 1.47 7.74 -52.48 -0.41 1.07 15 11 C 0.06 1.69 5.46 -17.82 -0.10 1.59 15 12 N -0.89 -24.43 13.29 55.43 0.74 -23.69 15 13 Si 0.90 20.43 29.54 -169.99 -5.02 15.41 15 14 H -0.27 -6.19 7.11 56.52 0.40 -5.78 15 15 H -0.29 -6.43 7.11 56.52 0.40 -6.03 15 16 H -0.28 -6.26 7.11 56.52 0.40 -5.85 15 17 C 0.13 2.53 10.95 -16.43 -0.18 2.35 15 18 N -0.30 -5.93 3.90 -12.20 -0.05 -5.98 15 19 N -0.33 -6.19 12.66 33.52 0.42 -5.77 15 20 H 0.08 0.73 8.14 -51.93 -0.42 0.30 15 21 H 0.07 0.73 8.14 -51.93 -0.42 0.31 15 22 H 0.08 0.66 8.14 -51.93 -0.42 0.24 15 23 H 0.15 2.18 8.06 -52.49 -0.42 1.76 15 24 H 0.18 2.78 8.06 -52.49 -0.42 2.36 15 25 H 0.04 0.99 8.10 -51.93 -0.42 0.57 15 26 H 0.04 0.87 8.08 -51.93 -0.42 0.45 15 27 H 0.27 6.96 8.31 -40.82 -0.34 6.62 15 28 H 0.17 3.09 8.06 -52.49 -0.42 2.67 15 LS Contribution 254.98 15.07 3.84 3.84 Total: -1.00 -29.54 254.98 -6.44 -35.98 By element: Atomic # 1 Polarization: 1.60 SS G_CDS: -2.92 Total: -1.32 kcal Atomic # 6 Polarization: -5.81 SS G_CDS: -3.33 Total: -9.14 kcal Atomic # 7 Polarization: -45.76 SS G_CDS: 0.99 Total: -44.77 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -29.54 -6.44 -35.98 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214451691.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.875 kcal (2) G-P(sol) polarization free energy of solvation -29.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds