Wall clock time and date at job start Mon Mar 30 2020 03:25:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86800 * 120.00258 * 2 1 4 4 H 1.48497 * 109.47080 * 240.00040 * 3 2 1 5 5 H 1.48492 * 109.47149 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46943 * 120.00301 * 3 2 1 7 7 C 1.39956 * 119.99548 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99933 * 162.95953 * 7 2 1 9 9 C 1.41413 * 119.99911 * 342.95763 * 7 2 1 10 10 C 1.40565 * 120.55455 * 334.73780 * 9 7 2 11 11 N 1.31474 * 120.18502 * 179.61956 * 10 9 7 12 12 C 1.31847 * 121.83928 * 359.52735 * 11 10 9 13 13 C 1.39298 * 121.63219 * 0.16566 * 12 11 10 14 14 C 1.36866 * 119.19447 * 1.04783 * 13 12 11 15 15 C 1.50614 * 123.87059 * 177.94865 * 14 13 12 16 16 C 1.52896 * 111.26914 * 29.91198 * 15 14 13 17 17 C 1.53003 * 108.51428 * 268.77556 * 16 15 14 18 18 C 1.52593 * 109.77005 * 60.79890 * 17 16 15 19 19 C 1.50498 * 118.02625 * 182.41219 * 13 12 11 20 20 H 0.97006 * 119.99685 * 359.97438 * 1 2 3 21 21 H 1.08004 * 119.91190 * 359.59864 * 10 9 7 22 22 H 1.07998 * 119.18589 * 180.16248 * 12 11 10 23 23 H 1.08993 * 109.11863 * 150.37557 * 15 14 13 24 24 H 1.08997 * 109.11635 * 269.45107 * 15 14 13 25 25 H 1.08994 * 109.63173 * 28.48489 * 16 15 14 26 26 H 1.09000 * 109.62435 * 149.06846 * 16 15 14 27 27 H 1.08998 * 109.42323 * 300.70343 * 17 16 15 28 28 H 1.09007 * 109.41599 * 180.88691 * 17 16 15 29 29 H 1.08992 * 109.75908 * 273.43654 * 18 17 16 30 30 H 1.09000 * 109.75669 * 152.67774 * 18 17 16 31 31 H 1.08998 * 109.21242 * 349.85107 * 19 13 12 32 32 H 1.08998 * 109.21186 * 109.18086 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0960 1.6963 -1.2125 5 1 1.2774 2.7464 0.0006 6 1 3.0961 1.6962 1.2125 7 6 2.0079 -1.2121 -0.0005 8 1 3.0523 -1.2326 -0.2746 9 6 1.3473 -2.4100 0.3579 10 6 0.2174 -2.3804 1.1935 11 7 -0.3956 -3.4979 1.5161 12 6 0.0123 -4.6692 1.0688 13 6 1.1193 -4.7862 0.2314 14 6 1.8134 -3.6598 -0.1190 15 6 3.0491 -3.6692 -0.9801 16 6 3.0259 -4.8335 -1.9708 17 6 3.7174 -6.0355 -1.3242 18 6 2.9696 -6.4413 -0.0575 19 6 1.4807 -6.1563 -0.2757 20 1 -0.4850 0.8401 0.0004 21 1 -0.1480 -1.4372 1.5720 22 1 -0.5250 -5.5599 1.3590 23 1 3.1064 -2.7314 -1.5325 24 1 3.9281 -3.7607 -0.3421 25 1 1.9940 -5.0899 -2.2104 26 1 3.5566 -4.5511 -2.8800 27 1 4.7435 -5.7698 -1.0700 28 1 3.7231 -6.8704 -2.0250 29 1 3.3359 -5.8603 0.7887 30 1 3.1172 -7.5043 0.1329 31 1 0.8909 -6.9027 0.2562 32 1 1.2564 -6.2152 -1.3408 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214458469.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:21 Heat of formation + Delta-G solvation = 1.916584 kcal Electronic energy + Delta-G solvation = -14609.622072 eV Core-core repulsion = 12340.526462 eV Total energy + Delta-G solvation = -2269.095610 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.19458 -36.39264 -34.09259 -31.80160 -30.85279 -28.97569 -25.57190 -24.78399 -23.97277 -20.97629 -19.72050 -19.12459 -17.02823 -15.85474 -15.12761 -14.87598 -14.40017 -13.70877 -13.50229 -13.06070 -12.54526 -12.07345 -11.90881 -11.65436 -11.62440 -11.39080 -11.21163 -10.72586 -10.70014 -10.43276 -10.20442 -10.11012 -9.88984 -9.61339 -9.32542 -7.92880 -7.69223 -7.35625 -6.87520 -4.44494 2.70592 2.89753 3.02884 3.04901 3.19905 3.86301 4.62562 5.28572 5.31976 5.38724 5.61554 5.69827 5.89696 6.08830 6.11255 6.16974 6.18921 6.20572 6.28777 6.49471 6.61443 6.66578 6.76223 6.80335 6.93961 7.02004 7.15187 7.18105 7.39508 7.72454 7.88838 8.13585 8.35019 8.73524 8.79176 9.82156 10.09590 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.034536 B = 0.010298 C = 0.008322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.556253 B = 2718.423736 C = 3363.930588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.075 3.925 3 Si 0.911 3.089 4 H -0.265 1.265 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.450 4.450 8 H 0.082 0.918 9 C 0.064 3.936 10 C 0.031 3.969 11 N -0.479 5.479 12 C -0.045 4.045 13 C -0.100 4.100 14 C -0.152 4.152 15 C -0.056 4.056 16 C -0.124 4.124 17 C -0.116 4.116 18 C -0.113 4.113 19 C -0.072 4.072 20 H 0.284 0.716 21 H 0.146 0.854 22 H 0.114 0.886 23 H 0.070 0.930 24 H 0.051 0.949 25 H 0.071 0.929 26 H 0.052 0.948 27 H 0.055 0.945 28 H 0.051 0.949 29 H 0.064 0.936 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.433 -5.015 -2.538 7.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.144 4.144 3 Si 0.735 3.265 4 H -0.189 1.189 5 H -0.202 1.202 6 H -0.187 1.187 7 C -0.480 4.480 8 H 0.100 0.900 9 C 0.060 3.940 10 C -0.131 4.131 11 N -0.186 5.186 12 C -0.200 4.200 13 C -0.102 4.102 14 C -0.160 4.160 15 C -0.093 4.093 16 C -0.161 4.161 17 C -0.154 4.154 18 C -0.151 4.151 19 C -0.110 4.110 20 H 0.096 0.904 21 H 0.163 0.837 22 H 0.132 0.868 23 H 0.089 0.911 24 H 0.069 0.931 25 H 0.089 0.911 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.487 -4.849 -2.011 6.906 hybrid contribution 0.991 0.797 -0.577 1.397 sum 5.478 -4.052 -2.588 7.289 Atomic orbital electron populations 1.69783 1.07631 1.29768 1.34123 1.25973 0.94766 1.01486 0.92167 0.86320 0.80128 0.80027 0.80049 1.18931 1.20210 1.18710 1.19498 0.97914 0.90742 1.39826 0.89977 1.18582 0.93001 0.92238 0.90177 1.22851 0.96500 0.94782 0.99008 1.67060 1.30253 0.98963 1.22339 1.21823 0.98752 0.94693 1.04759 1.19820 0.97233 0.93732 0.99398 1.19596 1.00011 0.92751 1.03618 1.20174 0.95378 0.97889 0.95853 1.21772 1.01012 0.95459 0.97864 1.21598 0.98967 0.97828 0.97013 1.21516 0.95587 0.99747 0.98219 1.20512 0.95468 0.94418 1.00589 0.90447 0.83658 0.86833 0.91108 0.93054 0.91085 0.92901 0.92639 0.93033 0.91741 0.92708 0.92639 0.91321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.14 10.99 55.55 0.61 -19.53 16 2 C 0.07 1.83 5.16 -17.34 -0.09 1.74 16 3 Si 0.91 18.19 29.59 -169.99 -5.03 13.16 16 4 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 5 H -0.28 -5.41 7.11 56.52 0.40 -5.01 16 6 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 7 C -0.45 -11.50 8.08 -37.73 -0.30 -11.81 16 8 H 0.08 1.99 6.68 -52.49 -0.35 1.64 16 9 C 0.06 1.70 5.59 -106.51 -0.60 1.11 16 10 C 0.03 0.86 9.87 -16.83 -0.17 0.69 16 11 N -0.48 -12.74 10.34 -12.46 -0.13 -12.87 16 12 C -0.04 -1.08 10.74 -17.15 -0.18 -1.26 16 13 C -0.10 -2.22 5.13 -104.82 -0.54 -2.76 16 14 C -0.15 -3.61 5.56 -103.86 -0.58 -4.18 16 15 C -0.06 -1.12 4.71 -27.98 -0.13 -1.25 16 16 C -0.12 -2.06 5.62 -26.78 -0.15 -2.21 16 17 C -0.12 -1.68 5.64 -26.94 -0.15 -1.84 16 18 C -0.11 -1.75 5.74 -26.86 -0.15 -1.91 16 19 C -0.07 -1.26 5.20 -27.90 -0.15 -1.41 16 20 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 21 H 0.15 4.07 6.22 -52.48 -0.33 3.75 16 22 H 0.11 2.43 7.82 -52.49 -0.41 2.02 16 23 H 0.07 1.49 6.46 -51.93 -0.34 1.15 16 24 H 0.05 0.99 7.71 -51.93 -0.40 0.59 16 25 H 0.07 1.26 5.42 -51.93 -0.28 0.97 16 26 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.05 0.76 8.05 -51.93 -0.42 0.34 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.06 1.10 7.80 -51.93 -0.40 0.70 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.05 0.89 7.74 -51.93 -0.40 0.49 16 32 H 0.07 1.16 5.81 -51.93 -0.30 0.86 16 LS Contribution 251.69 15.07 3.79 3.79 Total: -1.00 -27.51 251.69 -7.98 -35.49 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -4.03 Total: 5.06 kcal Atomic # 6 Polarization: -21.90 SS G_CDS: -3.19 Total: -25.09 kcal Atomic # 7 Polarization: -32.88 SS G_CDS: 0.48 Total: -32.40 kcal Atomic # 14 Polarization: 18.19 SS G_CDS: -5.03 Total: 13.16 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -27.51 -7.98 -35.49 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214458469.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.404 kcal (2) G-P(sol) polarization free energy of solvation -27.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds