Wall clock time and date at job start Mon Mar 30 2020 03:25:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86800 * 120.00258 * 2 1 4 4 H 1.48497 * 109.47080 * 240.00040 * 3 2 1 5 5 H 1.48492 * 109.47149 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46943 * 120.00301 * 3 2 1 7 7 C 1.39956 * 119.99548 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99933 * 162.95953 * 7 2 1 9 9 C 1.41413 * 119.99911 * 342.95763 * 7 2 1 10 10 C 1.40565 * 120.55455 * 334.73780 * 9 7 2 11 11 N 1.31474 * 120.18502 * 179.61956 * 10 9 7 12 12 C 1.31847 * 121.83928 * 359.52735 * 11 10 9 13 13 C 1.39298 * 121.63219 * 0.16566 * 12 11 10 14 14 C 1.36866 * 119.19447 * 1.04783 * 13 12 11 15 15 C 1.50614 * 123.87059 * 177.94865 * 14 13 12 16 16 C 1.52896 * 111.26914 * 29.91198 * 15 14 13 17 17 C 1.53003 * 108.51428 * 268.77556 * 16 15 14 18 18 C 1.52593 * 109.77005 * 60.79890 * 17 16 15 19 19 C 1.50498 * 118.02625 * 182.41219 * 13 12 11 20 20 H 0.97006 * 119.99685 * 359.97438 * 1 2 3 21 21 H 1.08004 * 119.91190 * 359.59864 * 10 9 7 22 22 H 1.07998 * 119.18589 * 180.16248 * 12 11 10 23 23 H 1.08993 * 109.11863 * 150.37557 * 15 14 13 24 24 H 1.08997 * 109.11635 * 269.45107 * 15 14 13 25 25 H 1.08994 * 109.63173 * 28.48489 * 16 15 14 26 26 H 1.09000 * 109.62435 * 149.06846 * 16 15 14 27 27 H 1.08998 * 109.42323 * 300.70343 * 17 16 15 28 28 H 1.09007 * 109.41599 * 180.88691 * 17 16 15 29 29 H 1.08992 * 109.75908 * 273.43654 * 18 17 16 30 30 H 1.09000 * 109.75669 * 152.67774 * 18 17 16 31 31 H 1.08998 * 109.21242 * 349.85107 * 19 13 12 32 32 H 1.08998 * 109.21186 * 109.18086 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0960 1.6963 -1.2125 5 1 1.2774 2.7464 0.0006 6 1 3.0961 1.6962 1.2125 7 6 2.0079 -1.2121 -0.0005 8 1 3.0523 -1.2326 -0.2746 9 6 1.3473 -2.4100 0.3579 10 6 0.2174 -2.3804 1.1935 11 7 -0.3956 -3.4979 1.5161 12 6 0.0123 -4.6692 1.0688 13 6 1.1193 -4.7862 0.2314 14 6 1.8134 -3.6598 -0.1190 15 6 3.0491 -3.6692 -0.9801 16 6 3.0259 -4.8335 -1.9708 17 6 3.7174 -6.0355 -1.3242 18 6 2.9696 -6.4413 -0.0575 19 6 1.4807 -6.1563 -0.2757 20 1 -0.4850 0.8401 0.0004 21 1 -0.1480 -1.4372 1.5720 22 1 -0.5250 -5.5599 1.3590 23 1 3.1064 -2.7314 -1.5325 24 1 3.9281 -3.7607 -0.3421 25 1 1.9940 -5.0899 -2.2104 26 1 3.5566 -4.5511 -2.8800 27 1 4.7435 -5.7698 -1.0700 28 1 3.7231 -6.8704 -2.0250 29 1 3.3359 -5.8603 0.7887 30 1 3.1172 -7.5043 0.1329 31 1 0.8909 -6.9027 0.2562 32 1 1.2564 -6.2152 -1.3408 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214458469.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:20 Heat of formation + Delta-G solvation = -12.976611 kcal Electronic energy + Delta-G solvation = -14610.267890 eV Core-core repulsion = 12340.526462 eV Total energy + Delta-G solvation = -2269.741428 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.92645 -37.96025 -35.97084 -33.49401 -32.47914 -30.67692 -27.46875 -26.29080 -25.51468 -22.82581 -21.48309 -20.44593 -18.88051 -17.59859 -16.76082 -16.55659 -16.03101 -15.28557 -15.09987 -14.59976 -14.13846 -13.69193 -13.55081 -13.31144 -13.15650 -13.07074 -12.88655 -12.55561 -12.25853 -11.90610 -11.59180 -11.52009 -11.31236 -11.15105 -11.07327 -9.84566 -9.56855 -9.25866 -8.72734 -6.40977 0.85750 1.02864 1.37555 1.49710 1.54051 2.17491 2.74262 3.69761 4.00962 4.03792 4.15537 4.27618 4.28821 4.50732 4.61122 4.70690 4.73435 4.81603 4.99532 5.03455 5.14908 5.19649 5.25821 5.29562 5.34331 5.49596 5.52186 5.55198 5.63828 5.85215 6.04697 6.21188 6.42139 6.81297 6.87025 7.84841 8.26883 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.034536 B = 0.010298 C = 0.008322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.556253 B = 2718.423736 C = 3363.930588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.033 3.967 3 Si 0.986 3.014 4 H -0.254 1.254 5 H -0.269 1.269 6 H -0.260 1.260 7 C -0.474 4.474 8 H 0.089 0.911 9 C 0.035 3.965 10 C -0.008 4.008 11 N -0.500 5.500 12 C -0.059 4.059 13 C -0.098 4.098 14 C -0.161 4.161 15 C -0.052 4.052 16 C -0.119 4.119 17 C -0.112 4.112 18 C -0.110 4.110 19 C -0.071 4.071 20 H 0.291 0.709 21 H 0.125 0.875 22 H 0.140 0.860 23 H 0.054 0.946 24 H 0.058 0.942 25 H 0.060 0.940 26 H 0.073 0.927 27 H 0.065 0.935 28 H 0.080 0.920 29 H 0.042 0.958 30 H 0.087 0.913 31 H 0.072 0.928 32 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.211 -6.384 -3.697 10.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.183 4.183 3 Si 0.806 3.194 4 H -0.178 1.178 5 H -0.194 1.194 6 H -0.184 1.184 7 C -0.504 4.504 8 H 0.107 0.893 9 C 0.031 3.969 10 C -0.169 4.169 11 N -0.208 5.208 12 C -0.216 4.216 13 C -0.099 4.099 14 C -0.169 4.169 15 C -0.090 4.090 16 C -0.157 4.157 17 C -0.149 4.149 18 C -0.147 4.147 19 C -0.108 4.108 20 H 0.102 0.898 21 H 0.143 0.857 22 H 0.157 0.843 23 H 0.073 0.927 24 H 0.076 0.924 25 H 0.079 0.921 26 H 0.091 0.909 27 H 0.084 0.916 28 H 0.099 0.901 29 H 0.061 0.939 30 H 0.105 0.895 31 H 0.091 0.909 32 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 6.266 -6.214 -3.171 9.377 hybrid contribution 0.387 1.117 -0.212 1.201 sum 6.653 -5.097 -3.383 9.038 Atomic orbital electron populations 1.69862 1.09330 1.31049 1.34597 1.26907 0.95440 1.04922 0.91030 0.85192 0.78722 0.75225 0.80291 1.17810 1.19367 1.18414 1.19775 0.98314 0.91482 1.40800 0.89335 1.18967 0.93261 0.94130 0.90575 1.22613 0.98386 0.94495 1.01378 1.66979 1.30988 0.99707 1.23163 1.22417 0.99632 0.94609 1.04959 1.20323 0.95797 0.95979 0.97850 1.20130 1.01111 0.92233 1.03384 1.20182 0.93743 0.98985 0.96043 1.21745 1.01130 0.95012 0.97781 1.21582 0.98887 0.97582 0.96843 1.21511 0.93739 1.01435 0.98031 1.20595 0.97487 0.91485 1.01243 0.89844 0.85734 0.84279 0.92718 0.92386 0.92139 0.90876 0.91581 0.90102 0.93902 0.89488 0.90896 0.90082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.69 10.99 21.83 0.24 -43.45 16 2 C 0.03 1.64 5.16 85.26 0.44 2.08 16 3 Si 0.99 37.54 29.59 68.60 2.03 39.57 16 4 H -0.25 -9.19 7.11 99.48 0.71 -8.48 16 5 H -0.27 -9.81 7.11 99.48 0.71 -9.10 16 6 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 7 C -0.47 -24.98 8.08 23.47 0.19 -24.79 16 8 H 0.09 4.38 6.68 -2.91 -0.02 4.36 16 9 C 0.03 1.92 5.59 -21.09 -0.12 1.80 16 10 C -0.01 -0.46 9.87 85.31 0.84 0.38 16 11 N -0.50 -27.57 10.34 -193.35 -2.00 -29.57 16 12 C -0.06 -2.85 10.74 84.95 0.91 -1.94 16 13 C -0.10 -4.27 5.13 -19.99 -0.10 -4.38 16 14 C -0.16 -7.66 5.56 -19.37 -0.11 -7.77 16 15 C -0.05 -2.05 4.71 29.79 0.14 -1.91 16 16 C -0.12 -3.63 5.62 30.56 0.17 -3.46 16 17 C -0.11 -2.73 5.64 30.46 0.17 -2.56 16 18 C -0.11 -2.98 5.74 30.51 0.18 -2.80 16 19 C -0.07 -2.26 5.20 29.84 0.16 -2.11 16 20 H 0.29 13.99 8.30 -92.70 -0.77 13.22 16 21 H 0.13 7.50 6.22 -2.91 -0.02 7.49 16 22 H 0.14 5.79 7.82 -2.91 -0.02 5.76 16 23 H 0.05 2.29 6.46 -2.39 -0.02 2.27 16 24 H 0.06 2.17 7.71 -2.39 -0.02 2.15 16 25 H 0.06 1.97 5.42 -2.39 -0.01 1.96 16 26 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 27 H 0.07 1.52 8.05 -2.39 -0.02 1.50 16 28 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 29 H 0.04 1.35 7.80 -2.39 -0.02 1.33 16 30 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.07 2.08 7.74 -2.39 -0.02 2.06 16 32 H 0.08 2.45 5.81 -2.39 -0.01 2.44 16 Total: -1.00 -61.91 251.69 4.26 -57.65 By element: Atomic # 1 Polarization: 22.15 SS G_CDS: 1.12 Total: 23.26 kcal Atomic # 6 Polarization: -50.33 SS G_CDS: 2.87 Total: -47.46 kcal Atomic # 7 Polarization: -71.27 SS G_CDS: -1.76 Total: -73.03 kcal Atomic # 14 Polarization: 37.54 SS G_CDS: 2.03 Total: 39.57 kcal Total: -61.91 4.26 -57.65 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214458469.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.678 kcal (2) G-P(sol) polarization free energy of solvation -61.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds