Wall clock time and date at job start Mon Mar 30 2020 02:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 119.99776 * 2 1 4 4 H 1.48506 * 109.47130 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.47297 * 119.99631 * 3 2 1 6 6 H 1.48505 * 109.47018 * 239.99936 * 3 2 1 7 7 C 1.37870 * 120.00440 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00151 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99753 * 0.02562 * 7 2 1 10 10 N 1.46900 * 109.46912 * 179.97438 * 9 7 2 11 11 C 1.46846 * 111.00027 * 70.54216 * 10 9 7 12 12 C 1.53036 * 109.52531 * 185.83877 * 11 10 9 13 13 C 1.53124 * 109.27558 * 300.81724 * 12 11 10 14 14 C 1.53117 * 109.15850 * 57.65336 * 13 12 11 15 15 C 1.46850 * 110.99787 * 194.74790 * 10 9 7 16 16 H 1.09004 * 109.46213 * 294.17701 * 15 10 9 17 17 C 1.52998 * 109.46140 * 54.14536 * 15 10 9 18 18 Cl 1.80301 * 109.47119 * 54.79573 * 17 15 10 19 19 H 0.97007 * 120.00523 * 0.02562 * 1 2 3 20 20 H 1.09002 * 109.47276 * 299.99582 * 9 7 2 21 21 H 1.09001 * 109.47388 * 60.00148 * 9 7 2 22 22 H 1.09005 * 109.46190 * 305.85014 * 11 10 9 23 23 H 1.08999 * 109.46539 * 65.83093 * 11 10 9 24 24 H 1.09003 * 109.50212 * 60.75882 * 12 11 10 25 25 H 1.08998 * 109.50292 * 180.87986 * 12 11 10 26 26 H 1.09001 * 109.51831 * 177.55884 * 13 12 11 27 27 H 1.08997 * 109.52218 * 297.75039 * 13 12 11 28 28 H 1.09006 * 109.50516 * 62.28775 * 14 13 12 29 29 H 1.09001 * 109.50117 * 182.36131 * 14 13 12 30 30 H 1.09004 * 109.47128 * 174.79214 * 17 15 10 31 31 H 1.08997 * 109.47274 * 294.79459 * 17 15 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1027 1.6966 1.2125 6 1 3.1028 1.6965 -1.2125 7 6 2.0045 -1.1939 0.0005 8 1 3.0845 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2057 -3.6156 0.0005 11 6 2.8948 -3.7188 1.2932 12 6 3.9804 -4.7942 1.2097 13 6 3.3367 -6.1349 0.8449 14 6 2.5851 -5.9872 -0.4809 15 6 1.5400 -4.8772 -0.3485 16 1 0.8278 -5.1404 0.4335 17 6 0.8000 -4.7124 -1.6774 18 17 1.9499 -4.1281 -2.9372 19 1 -0.4851 0.8401 -0.0004 20 1 0.6241 -2.5567 0.8903 21 1 0.6247 -2.5571 -0.8897 22 1 3.3517 -2.7600 1.5387 23 1 2.1763 -3.9876 2.0674 24 1 4.7070 -4.5193 0.4450 25 1 4.4812 -4.8814 2.1739 26 1 4.1114 -6.8947 0.7418 27 1 2.6386 -6.4290 1.6285 28 1 3.2897 -5.7311 -1.2722 29 1 2.0897 -6.9270 -0.7250 30 1 0.3835 -5.6723 -1.9828 31 1 -0.0058 -3.9884 -1.5572 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238506319.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:04 Heat of formation + Delta-G solvation = -21.226003 kcal Electronic energy + Delta-G solvation = -13403.927355 eV Core-core repulsion = 11131.395357 eV Total energy + Delta-G solvation = -2272.531998 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 217.093 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.58212 -35.12764 -33.57837 -32.04082 -31.37911 -27.11543 -26.12734 -23.69620 -21.59133 -20.58642 -19.01118 -16.30052 -15.29610 -14.92426 -14.36358 -14.15500 -13.86856 -13.41129 -12.64501 -12.37757 -12.15770 -11.95025 -11.56675 -11.27619 -10.80678 -10.74347 -10.63787 -10.36285 -10.22562 -10.02903 -9.75167 -9.56544 -9.28630 -9.12451 -8.35082 -7.17230 -5.97179 -3.96595 2.98979 3.37442 3.41080 3.44825 4.46662 4.81319 5.10058 5.15113 5.33606 5.38243 5.57085 5.65696 5.69204 5.84115 6.02090 6.05452 6.16299 6.28180 6.33501 6.39524 6.57868 6.78269 6.80452 7.32165 7.35177 7.87159 8.14996 8.25827 8.60900 9.10022 9.66688 11.13796 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.030254 B = 0.010550 C = 0.008905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.271818 B = 2653.502531 C = 3143.384907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.055 3.945 3 Si 0.896 3.104 4 H -0.289 1.289 5 H -0.278 1.278 6 H -0.276 1.276 7 C -0.497 4.497 8 H 0.062 0.938 9 C 0.189 3.811 10 N -0.520 5.520 11 C 0.066 3.934 12 C -0.117 4.117 13 C -0.116 4.116 14 C -0.113 4.113 15 C 0.074 3.926 16 H 0.041 0.959 17 C -0.025 4.025 18 Cl -0.170 7.170 19 H 0.260 0.740 20 H -0.014 1.014 21 H 0.037 0.963 22 H 0.082 0.918 23 H 0.016 0.984 24 H 0.068 0.932 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.077 0.923 29 H 0.055 0.945 30 H 0.081 0.919 31 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.208 -11.144 -0.180 11.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.146 4.146 3 Si 0.724 3.276 4 H -0.215 1.215 5 H -0.204 1.204 6 H -0.202 1.202 7 C -0.535 4.535 8 H 0.080 0.920 9 C 0.064 3.936 10 N -0.246 5.246 11 C -0.062 4.062 12 C -0.155 4.155 13 C -0.154 4.154 14 C -0.151 4.151 15 C -0.035 4.035 16 H 0.058 0.942 17 C -0.088 4.088 18 Cl -0.144 7.144 19 H 0.070 0.930 20 H 0.004 0.996 21 H 0.055 0.945 22 H 0.101 0.899 23 H 0.034 0.966 24 H 0.086 0.914 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.096 0.904 29 H 0.074 0.926 30 H 0.099 0.901 31 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 3.481 -10.875 -0.632 11.436 hybrid contribution -0.292 0.830 0.610 1.071 sum 3.189 -10.045 -0.023 10.539 Atomic orbital electron populations 1.69936 1.06006 1.26720 1.51526 1.24950 0.94827 0.99157 0.95669 0.86597 0.79454 0.82957 0.78605 1.21486 1.20394 1.20199 1.21069 0.93442 0.89761 1.49274 0.91997 1.19828 0.90238 0.87539 0.96018 1.62097 1.31022 1.02050 1.29402 1.21926 0.95231 0.99016 0.90039 1.21627 0.98553 0.94682 1.00675 1.21530 0.99083 0.97526 0.97246 1.21663 0.98408 0.96603 0.98391 1.21742 0.94792 0.92718 0.94293 0.94162 1.24434 0.93922 1.01051 0.89412 1.98687 1.66678 1.91088 1.57907 0.93016 0.99579 0.94481 0.89920 0.96564 0.91358 0.92631 0.92588 0.92890 0.90392 0.92649 0.90060 0.88571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.78 13.29 55.43 0.74 -26.04 16 2 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 3 Si 0.90 21.96 29.54 -169.99 -5.02 16.94 16 4 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 5 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.50 -13.93 8.49 -34.44 -0.29 -14.22 16 8 H 0.06 1.74 7.44 -52.49 -0.39 1.35 16 9 C 0.19 4.80 4.50 -4.97 -0.02 4.78 16 10 N -0.52 -10.94 3.91 -228.12 -0.89 -11.83 16 11 C 0.07 1.28 5.30 -3.84 -0.02 1.26 16 12 C -0.12 -1.82 6.09 -26.65 -0.16 -1.98 16 13 C -0.12 -1.60 6.00 -26.61 -0.16 -1.76 16 14 C -0.11 -1.66 5.24 -26.65 -0.14 -1.80 16 15 C 0.07 1.29 2.15 -67.72 -0.15 1.14 16 16 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 17 C -0.02 -0.42 5.64 37.16 0.21 -0.21 16 18 Cl -0.17 -3.15 27.57 -51.86 -1.43 -4.58 16 19 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 20 H -0.01 -0.37 8.07 -51.93 -0.42 -0.79 16 21 H 0.04 0.99 5.51 -51.93 -0.29 0.70 16 22 H 0.08 1.74 7.05 -51.93 -0.37 1.38 16 23 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 24 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 25 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.08 1.23 7.27 -51.93 -0.38 0.86 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.10 1.76 6.33 -51.93 -0.33 1.43 16 LS Contribution 259.60 15.07 3.91 3.91 Total: -1.00 -29.37 259.60 -8.21 -37.58 By element: Atomic # 1 Polarization: 0.03 SS G_CDS: -4.69 Total: -4.65 kcal Atomic # 6 Polarization: -10.50 SS G_CDS: -0.83 Total: -11.33 kcal Atomic # 7 Polarization: -37.72 SS G_CDS: -0.16 Total: -37.88 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Atomic # 17 Polarization: -3.15 SS G_CDS: -1.43 Total: -4.58 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -29.37 -8.21 -37.58 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238506319.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.355 kcal (2) G-P(sol) polarization free energy of solvation -29.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds