Wall clock time and date at job start Mon Mar 30 2020 03:14:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36653 * 126.31181 * 2 1 4 4 N 1.37825 * 125.02811 * 0.04666 * 3 2 1 5 5 N 1.30950 * 109.94360 * 179.76693 * 3 2 1 6 6 C 1.36023 * 109.51967 * 0.40897 * 5 3 2 7 7 C 1.39055 * 133.28806 * 179.88743 * 6 5 3 8 8 C 1.40378 * 119.43658 * 179.66917 * 7 6 5 9 9 C 1.41299 * 120.02271 * 179.97438 * 8 7 6 10 10 H 1.08004 * 120.00320 * 154.42531 * 9 8 7 11 11 C 1.39870 * 119.99955 * 334.43257 * 9 8 7 12 12 N 1.30888 * 119.99886 * 343.14253 * 11 9 8 13 13 Si 1.86799 * 120.00172 * 163.15150 * 11 9 8 14 14 H 1.48497 * 109.47675 * 89.99604 * 13 11 9 15 15 H 1.48497 * 109.47040 * 209.99864 * 13 11 9 16 16 H 1.48499 * 109.46928 * 329.99314 * 13 11 9 17 17 C 1.41092 * 119.95617 * 359.97438 * 8 7 6 18 18 C 1.36207 * 120.33966 * 0.02735 * 17 8 7 19 19 C 1.38132 * 126.31291 * 180.02562 * 2 1 3 20 20 H 1.08998 * 109.47001 * 269.97861 * 1 2 3 21 21 H 1.08998 * 109.46801 * 29.98014 * 1 2 3 22 22 H 1.09002 * 109.46651 * 149.98011 * 1 2 3 23 23 H 0.96995 * 119.99759 * 0.02562 * 4 3 2 24 24 H 0.96999 * 119.99903 * 180.02562 * 4 3 2 25 25 H 1.08006 * 120.28185 * 359.66650 * 7 6 5 26 26 H 0.97000 * 119.99896 * 180.02562 * 12 11 9 27 27 H 1.08001 * 119.82793 * 180.02562 * 17 8 7 28 28 H 1.08007 * 119.84844 * 179.97438 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2742 1.1012 0.0000 4 7 1.8332 2.4070 0.0009 5 7 3.5306 0.7321 0.0050 6 6 3.6055 -0.6260 -0.0006 7 6 4.6686 -1.5224 -0.0010 8 6 4.4079 -2.9017 -0.0008 9 6 5.4788 -3.8236 -0.0016 10 1 5.3381 -4.8153 0.4022 11 6 6.7213 -3.4517 -0.5255 12 7 6.8168 -2.4014 -1.3007 13 14 8.2443 -4.4539 -0.1188 14 1 8.4166 -5.5259 -1.1319 15 1 9.4363 -3.5685 -0.1273 16 1 8.0906 -5.0641 1.2263 17 6 3.0760 -3.3671 0.0004 18 6 2.0387 -2.4842 0.0007 19 6 2.2830 -1.1131 -0.0005 20 1 -0.3633 -0.0004 1.0277 21 1 -0.3633 0.8902 -0.5135 22 1 -0.3633 -0.8898 -0.5142 23 1 0.8822 2.5976 0.0020 24 1 2.4740 3.1352 0.0005 25 1 5.6861 -1.1604 -0.0014 26 1 7.6783 -2.1437 -1.6643 27 1 2.8778 -4.4288 0.0009 28 1 1.0222 -2.8492 0.0011 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238537278.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:23 Heat of formation + Delta-G solvation = 52.193375 kcal Electronic energy + Delta-G solvation = -13926.440252 eV Core-core repulsion = 11555.984464 eV Total energy + Delta-G solvation = -2370.455788 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.43024 -38.22999 -35.53202 -34.76905 -34.33727 -30.93730 -29.47695 -27.86472 -26.33437 -23.02395 -22.45476 -20.97010 -19.33987 -18.34713 -17.65921 -16.95571 -16.72313 -16.53494 -15.82234 -14.82690 -14.60446 -14.33529 -13.95195 -13.70045 -13.27660 -13.05305 -12.70923 -12.57885 -12.27418 -11.82494 -11.69484 -11.11856 -10.77632 -10.55674 -10.39402 -8.74937 -8.54768 -8.20534 -6.18177 0.73948 1.07352 1.41812 1.54113 1.59166 1.76742 2.27347 2.33700 2.85171 2.91530 3.81980 3.96818 4.07891 4.44127 4.51417 4.67047 4.77985 5.00498 5.19590 5.27022 5.35006 5.54148 5.86781 5.95477 6.10823 6.22525 6.26400 6.53254 6.80763 6.94964 7.03254 7.11776 7.60129 8.47041 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.052273 B = 0.008071 C = 0.007136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.525046 B = 3468.270072 C = 3922.781441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.517 5.517 3 C 0.524 3.476 4 N -0.813 5.813 5 N -0.612 5.612 6 C 0.073 3.927 7 C -0.185 4.185 8 C 0.076 3.924 9 C -0.499 4.499 10 H 0.083 0.917 11 C 0.029 3.971 12 N -0.835 5.835 13 Si 0.982 3.018 14 H -0.259 1.259 15 H -0.274 1.274 16 H -0.256 1.256 17 C -0.195 4.195 18 C -0.083 4.083 19 C -0.062 4.062 20 H 0.079 0.921 21 H 0.104 0.896 22 H 0.086 0.914 23 H 0.421 0.579 24 H 0.425 0.575 25 H 0.090 0.910 26 H 0.282 0.718 27 H 0.121 0.879 28 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.199 5.007 1.821 12.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.219 5.219 3 C 0.167 3.833 4 N -0.371 5.371 5 N -0.346 5.346 6 C -0.042 4.042 7 C -0.208 4.208 8 C 0.072 3.928 9 C -0.529 4.529 10 H 0.101 0.899 11 C -0.184 4.184 12 N -0.462 5.462 13 Si 0.803 3.197 14 H -0.184 1.184 15 H -0.198 1.198 16 H -0.180 1.180 17 C -0.215 4.215 18 C -0.103 4.103 19 C -0.166 4.166 20 H 0.097 0.903 21 H 0.122 0.878 22 H 0.104 0.896 23 H 0.254 0.746 24 H 0.258 0.742 25 H 0.108 0.892 26 H 0.093 0.907 27 H 0.139 0.861 28 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -10.500 5.543 1.683 11.992 hybrid contribution 0.146 -0.354 -0.073 0.390 sum -10.353 5.189 1.609 11.692 Atomic orbital electron populations 1.22069 0.74675 1.05402 1.03872 1.44573 1.07159 1.03132 1.67068 1.19756 0.85058 0.83837 0.94689 1.40696 1.11331 0.99287 1.85822 1.70510 1.16387 1.12194 1.35535 1.18975 0.93555 0.89192 1.02445 1.20176 0.95474 0.91914 1.13227 1.17665 0.93151 0.91728 0.90248 1.19722 0.95626 1.00167 1.37384 0.89892 1.26793 1.03504 0.96099 0.92002 1.69989 1.27413 1.25146 1.23605 0.85215 0.76081 0.78391 0.80016 1.18401 1.19837 1.17976 1.20890 0.92024 0.98556 1.10031 1.19445 0.99026 0.88229 1.03646 1.18515 0.90085 0.89358 1.18600 0.90281 0.87774 0.89551 0.74584 0.74154 0.89222 0.90747 0.86116 0.85102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.74 10.94 127.77 1.40 3.14 15 2 N -0.52 -18.83 3.22 -540.68 -1.74 -20.58 15 3 C 0.52 20.02 8.94 260.51 2.33 22.35 15 4 N -0.81 -19.34 9.03 -58.53 -0.53 -19.87 15 5 N -0.61 -30.82 11.33 -190.39 -2.16 -32.97 15 6 C 0.07 4.06 7.20 39.35 0.28 4.35 15 7 C -0.18 -11.20 8.73 22.99 0.20 -11.00 15 8 C 0.08 4.39 5.57 -21.31 -0.12 4.27 15 9 C -0.50 -28.28 9.04 23.42 0.21 -28.07 15 10 H 0.08 4.39 7.90 -2.91 -0.02 4.37 15 11 C 0.03 1.59 5.14 85.23 0.44 2.03 15 12 N -0.83 -48.38 10.96 21.82 0.24 -48.14 15 13 Si 0.98 40.87 29.59 68.60 2.03 42.90 15 14 H -0.26 -10.19 7.11 99.48 0.71 -9.48 15 15 H -0.27 -11.06 7.11 99.48 0.71 -10.36 15 16 H -0.26 -10.29 7.11 99.48 0.71 -9.58 15 17 C -0.19 -9.66 9.71 22.50 0.22 -9.44 15 18 C -0.08 -3.65 9.95 22.05 0.22 -3.43 15 19 C -0.06 -2.90 6.88 39.06 0.27 -2.63 15 20 H 0.08 1.43 8.14 -2.39 -0.02 1.41 15 21 H 0.10 1.48 7.44 -2.39 -0.02 1.46 15 22 H 0.09 1.75 8.14 -2.39 -0.02 1.73 15 23 H 0.42 6.25 7.98 -92.71 -0.74 5.51 15 24 H 0.43 9.06 8.95 -92.71 -0.83 8.23 15 25 H 0.09 5.89 6.19 -2.91 -0.02 5.87 15 26 H 0.28 14.95 8.30 -92.71 -0.77 14.18 15 27 H 0.12 5.34 8.06 -2.91 -0.02 5.32 15 28 H 0.13 4.55 8.06 -2.91 -0.02 4.52 15 Total: -1.00 -76.83 246.70 2.93 -73.90 By element: Atomic # 1 Polarization: 23.56 SS G_CDS: -0.36 Total: 23.20 kcal Atomic # 6 Polarization: -23.88 SS G_CDS: 5.45 Total: -18.43 kcal Atomic # 7 Polarization: -117.37 SS G_CDS: -4.19 Total: -121.56 kcal Atomic # 14 Polarization: 40.87 SS G_CDS: 2.03 Total: 42.90 kcal Total: -76.83 2.93 -73.90 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238537278.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.093 kcal (2) G-P(sol) polarization free energy of solvation -76.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds