Wall clock time and date at job start Mon Mar 30 2020 03:32:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30820 * 1 3 3 Si 1.86805 * 119.99659 * 2 1 4 4 H 1.48500 * 109.46904 * 270.00211 * 3 2 1 5 5 H 1.48495 * 109.47084 * 30.00074 * 3 2 1 6 6 H 1.48495 * 109.47166 * 150.00525 * 3 2 1 7 7 C 1.39948 * 120.00452 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00089 * 162.43557 * 7 2 1 9 9 C 1.41387 * 119.99542 * 342.71359 * 7 2 1 10 10 C 1.40739 * 120.24794 * 335.14531 * 9 7 2 11 11 C 1.37595 * 119.74594 * 179.74413 * 10 9 7 12 12 C 1.38657 * 120.24787 * 0.50971 * 11 10 9 13 13 C 1.38607 * 120.50094 * 359.76723 * 12 11 10 14 14 C 1.50704 * 119.87332 * 179.97438 * 13 12 11 15 15 N 1.46903 * 112.84859 * 198.78051 * 14 13 12 16 16 C 1.53779 * 113.61327 * 67.47803 * 14 13 12 17 17 C 1.53784 * 87.08187 * 220.01582 * 16 14 13 18 18 C 1.53777 * 113.61803 * 329.97629 * 14 13 12 19 19 C 1.37636 * 120.25393 * 359.97118 * 13 12 11 20 20 H 0.97000 * 120.00750 * 359.97438 * 1 2 3 21 21 H 1.08004 * 120.12294 * 359.97438 * 10 9 7 22 22 H 1.08002 * 119.87506 * 180.25803 * 11 10 9 23 23 H 1.08007 * 119.74875 * 179.73730 * 12 11 10 24 24 H 1.00899 * 111.00393 * 309.66669 * 15 14 13 25 25 H 1.00894 * 111.00299 * 73.62364 * 15 14 13 26 26 H 1.09003 * 113.61519 * 334.56111 * 16 14 13 27 27 H 1.09004 * 113.61873 * 105.47215 * 16 14 13 28 28 H 1.09004 * 113.61731 * 270.88546 * 17 16 14 29 29 H 1.09005 * 113.61601 * 139.97850 * 17 16 14 30 30 H 1.08996 * 113.61710 * 254.53411 * 18 14 13 31 31 H 1.09003 * 113.60962 * 25.43503 * 18 14 13 32 32 H 1.08001 * 120.13308 * 179.97438 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 2.4895 2.0465 -1.4001 5 1 1.4395 2.6527 0.7000 6 1 3.5397 1.4403 0.6999 7 6 2.0080 -1.2119 -0.0005 8 1 3.0502 -1.2335 -0.2828 9 6 1.3490 -2.4089 0.3628 10 6 0.2162 -2.3694 1.1971 11 6 -0.4203 -3.5401 1.5399 12 6 0.0565 -4.7564 1.0752 13 6 1.1747 -4.8077 0.2578 14 6 1.6812 -6.1374 -0.2387 15 7 3.0733 -6.0798 -0.7043 16 6 0.7275 -6.8300 -1.2264 17 6 1.0755 -8.1487 -0.5159 18 6 1.4020 -7.3021 0.7258 19 6 1.8242 -3.6489 -0.1024 20 1 -0.4851 0.8400 0.0004 21 1 -0.1542 -1.4234 1.5637 22 1 -1.2922 -3.5119 2.1766 23 1 -0.4469 -5.6707 1.3528 24 1 3.2066 -5.3182 -1.3526 25 1 3.7121 -6.0086 0.0734 26 1 -0.3145 -6.5325 -1.1088 27 1 1.0661 -6.7894 -2.2617 28 1 1.9425 -8.6567 -0.9382 29 1 0.2202 -8.8107 -0.3804 30 1 2.2850 -7.6425 1.2666 31 1 0.5444 -7.1335 1.3771 32 1 2.6955 -3.6912 -0.7391 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238567591.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:17 Heat of formation + Delta-G solvation = 30.843201 kcal Electronic energy + Delta-G solvation = -14243.933503 eV Core-core repulsion = 11976.092245 eV Total energy + Delta-G solvation = -2267.841258 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.36258 -36.76377 -33.57882 -31.69684 -29.80776 -28.88412 -25.52341 -25.07065 -23.65751 -20.77896 -20.29061 -18.37728 -17.17114 -15.72384 -15.14647 -15.03357 -14.57697 -14.17676 -13.43915 -13.21192 -12.66720 -12.33600 -12.05602 -11.81457 -11.42192 -11.21071 -10.98363 -10.69428 -10.48904 -10.46703 -10.26726 -9.87047 -9.59392 -9.37914 -9.15500 -8.23487 -7.48743 -7.25322 -6.77294 -4.38343 2.77090 2.93607 3.05176 3.09085 3.20481 3.91345 4.57483 4.85354 5.13901 5.18464 5.34326 5.54930 5.76536 5.97138 6.09483 6.15930 6.23189 6.29387 6.40375 6.49373 6.71497 6.72680 6.87775 7.03828 7.23303 7.31706 7.51594 7.68008 7.84991 7.91552 8.02515 8.11609 8.26541 8.61687 8.87406 8.95977 10.17435 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.050699 B = 0.007549 C = 0.006930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.149158 B = 3708.160823 C = 4039.468069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.077 3.923 3 Si 0.906 3.094 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.466 4.466 8 H 0.076 0.924 9 C 0.112 3.888 10 C -0.165 4.165 11 C -0.106 4.106 12 C -0.231 4.231 13 C -0.079 4.079 14 C 0.135 3.865 15 N -0.824 5.824 16 C -0.120 4.120 17 C -0.131 4.131 18 C -0.128 4.128 19 C -0.225 4.225 20 H 0.280 0.720 21 H 0.116 0.884 22 H 0.087 0.913 23 H 0.089 0.911 24 H 0.345 0.655 25 H 0.339 0.661 26 H 0.081 0.919 27 H 0.064 0.936 28 H 0.079 0.921 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.087 0.913 32 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.621 -6.689 0.306 6.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.195 1.195 5 H -0.201 1.201 6 H -0.185 1.185 7 C -0.496 4.496 8 H 0.094 0.906 9 C 0.110 3.890 10 C -0.184 4.184 11 C -0.124 4.124 12 C -0.251 4.251 13 C -0.081 4.081 14 C 0.042 3.958 15 N -0.353 5.353 16 C -0.158 4.158 17 C -0.169 4.169 18 C -0.166 4.166 19 C -0.245 4.245 20 H 0.091 0.909 21 H 0.134 0.866 22 H 0.105 0.895 23 H 0.107 0.893 24 H 0.159 0.841 25 H 0.151 0.849 26 H 0.099 0.901 27 H 0.083 0.917 28 H 0.098 0.902 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.105 0.895 32 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 1.296 -7.258 -0.029 7.372 hybrid contribution 0.268 1.908 0.398 1.968 sum 1.564 -5.349 0.369 5.585 Atomic orbital electron populations 1.69822 1.07588 1.29169 1.35450 1.25895 0.94701 1.01280 0.92222 0.86345 0.80653 0.80702 0.79220 1.19495 1.20086 1.18498 1.19541 0.97901 0.91249 1.40872 0.90623 1.17563 0.91141 0.91872 0.88433 1.21338 0.99276 0.96765 1.01033 1.20690 0.98497 0.93405 0.99848 1.20181 1.00928 0.96023 1.07969 1.19793 0.96462 0.93711 0.98172 1.20640 0.88556 0.91378 0.95241 1.58921 1.03598 1.52446 1.20364 1.22928 0.98956 0.95496 0.98378 1.22719 1.00631 0.96128 0.97397 1.23096 1.01482 0.95791 0.96243 1.20722 1.03840 0.92549 1.07391 0.90907 0.86570 0.89524 0.89325 0.84109 0.84910 0.90071 0.91723 0.90205 0.92542 0.91996 0.89472 0.89344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.72 10.95 55.55 0.61 -20.11 16 2 C 0.08 1.93 5.15 -17.34 -0.09 1.84 16 3 Si 0.91 18.71 29.59 -169.99 -5.03 13.68 16 4 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 5 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 6 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 7 C -0.47 -12.40 9.05 -37.74 -0.34 -12.75 16 8 H 0.08 1.93 7.90 -52.49 -0.41 1.52 16 9 C 0.11 3.00 5.57 -106.82 -0.60 2.40 16 10 C -0.16 -4.33 8.69 -38.87 -0.34 -4.66 16 11 C -0.11 -2.51 10.02 -39.66 -0.40 -2.91 16 12 C -0.23 -5.13 9.00 -39.29 -0.35 -5.48 16 13 C -0.08 -1.73 5.24 -104.70 -0.55 -2.28 16 14 C 0.14 2.41 1.49 -131.94 -0.20 2.21 16 15 N -0.82 -13.44 8.95 0.47 0.00 -13.43 16 16 C -0.12 -1.97 7.38 -25.92 -0.19 -2.17 16 17 C -0.13 -1.87 8.00 -25.92 -0.21 -2.08 16 18 C -0.13 -2.02 7.23 -25.92 -0.19 -2.20 16 19 C -0.23 -5.43 9.08 -38.87 -0.35 -5.78 16 20 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 21 H 0.12 3.15 6.17 -52.48 -0.32 2.83 16 22 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 23 H 0.09 1.76 6.20 -52.48 -0.33 1.43 16 24 H 0.34 5.74 7.12 -39.29 -0.28 5.46 16 25 H 0.34 5.22 9.07 -39.29 -0.36 4.87 16 26 H 0.08 1.38 7.96 -51.93 -0.41 0.97 16 27 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.09 1.38 5.96 -51.93 -0.31 1.07 16 32 H 0.09 1.99 6.26 -52.49 -0.33 1.66 16 LS Contribution 262.29 15.07 3.95 3.95 Total: -1.00 -27.06 262.29 -8.27 -35.33 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: -4.00 Total: 14.44 kcal Atomic # 6 Polarization: -30.05 SS G_CDS: -3.80 Total: -33.85 kcal Atomic # 7 Polarization: -34.16 SS G_CDS: 0.61 Total: -33.54 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -5.03 Total: 13.68 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -27.06 -8.27 -35.33 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238567591.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.171 kcal (2) G-P(sol) polarization free energy of solvation -27.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.327 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds