Wall clock time and date at job start Mon Mar 30 2020 03:32:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30820 * 1 3 3 Si 1.86805 * 119.99659 * 2 1 4 4 H 1.48500 * 109.46904 * 270.00211 * 3 2 1 5 5 H 1.48495 * 109.47084 * 30.00074 * 3 2 1 6 6 H 1.48495 * 109.47166 * 150.00525 * 3 2 1 7 7 C 1.39948 * 120.00452 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00089 * 162.43557 * 7 2 1 9 9 C 1.41387 * 119.99542 * 342.71359 * 7 2 1 10 10 C 1.40739 * 120.24794 * 335.14531 * 9 7 2 11 11 C 1.37595 * 119.74594 * 179.74413 * 10 9 7 12 12 C 1.38657 * 120.24787 * 0.50971 * 11 10 9 13 13 C 1.38607 * 120.50094 * 359.76723 * 12 11 10 14 14 C 1.50704 * 119.87332 * 179.97438 * 13 12 11 15 15 N 1.46903 * 112.84859 * 198.78051 * 14 13 12 16 16 C 1.53779 * 113.61327 * 67.47803 * 14 13 12 17 17 C 1.53784 * 87.08187 * 220.01582 * 16 14 13 18 18 C 1.53777 * 113.61803 * 329.97629 * 14 13 12 19 19 C 1.37636 * 120.25393 * 359.97118 * 13 12 11 20 20 H 0.97000 * 120.00750 * 359.97438 * 1 2 3 21 21 H 1.08004 * 120.12294 * 359.97438 * 10 9 7 22 22 H 1.08002 * 119.87506 * 180.25803 * 11 10 9 23 23 H 1.08007 * 119.74875 * 179.73730 * 12 11 10 24 24 H 1.00899 * 111.00393 * 309.66669 * 15 14 13 25 25 H 1.00894 * 111.00299 * 73.62364 * 15 14 13 26 26 H 1.09003 * 113.61519 * 334.56111 * 16 14 13 27 27 H 1.09004 * 113.61873 * 105.47215 * 16 14 13 28 28 H 1.09004 * 113.61731 * 270.88546 * 17 16 14 29 29 H 1.09005 * 113.61601 * 139.97850 * 17 16 14 30 30 H 1.08996 * 113.61710 * 254.53411 * 18 14 13 31 31 H 1.09003 * 113.60962 * 25.43503 * 18 14 13 32 32 H 1.08001 * 120.13308 * 179.97438 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 2.4895 2.0465 -1.4001 5 1 1.4395 2.6527 0.7000 6 1 3.5397 1.4403 0.6999 7 6 2.0080 -1.2119 -0.0005 8 1 3.0502 -1.2335 -0.2828 9 6 1.3490 -2.4089 0.3628 10 6 0.2162 -2.3694 1.1971 11 6 -0.4203 -3.5401 1.5399 12 6 0.0565 -4.7564 1.0752 13 6 1.1747 -4.8077 0.2578 14 6 1.6812 -6.1374 -0.2387 15 7 3.0733 -6.0798 -0.7043 16 6 0.7275 -6.8300 -1.2264 17 6 1.0755 -8.1487 -0.5159 18 6 1.4020 -7.3021 0.7258 19 6 1.8242 -3.6489 -0.1024 20 1 -0.4851 0.8400 0.0004 21 1 -0.1542 -1.4234 1.5637 22 1 -1.2922 -3.5119 2.1766 23 1 -0.4469 -5.6707 1.3528 24 1 3.2066 -5.3182 -1.3526 25 1 3.7121 -6.0086 0.0734 26 1 -0.3145 -6.5325 -1.1088 27 1 1.0661 -6.7894 -2.2617 28 1 1.9425 -8.6567 -0.9382 29 1 0.2202 -8.8107 -0.3804 30 1 2.2850 -7.6425 1.2666 31 1 0.5444 -7.1335 1.3771 32 1 2.6955 -3.6912 -0.7391 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238567591.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:17 Heat of formation + Delta-G solvation = 15.368970 kcal Electronic energy + Delta-G solvation = -14244.604516 eV Core-core repulsion = 11976.092245 eV Total energy + Delta-G solvation = -2268.512271 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.83286 -38.48979 -35.44684 -33.10792 -31.68619 -30.60515 -27.29391 -26.46455 -25.13601 -22.58758 -22.00130 -19.85628 -18.88678 -17.49939 -16.75986 -16.42495 -16.05390 -15.82709 -15.08659 -14.89011 -14.23398 -14.08226 -13.65757 -13.35988 -12.93026 -12.89145 -12.74682 -12.26469 -12.14345 -11.99402 -11.65100 -11.31355 -11.25772 -11.03241 -10.98585 -9.64654 -9.39506 -9.09994 -8.65379 -6.37397 0.97301 1.06545 1.35343 1.46819 1.52352 2.18295 2.70245 3.53107 3.62985 3.89237 3.98777 4.10880 4.19070 4.45444 4.58532 4.67800 4.89957 4.94679 5.03568 5.10546 5.12669 5.15023 5.25832 5.38891 5.53968 5.55190 5.69177 5.99459 6.07186 6.14509 6.32813 6.41884 6.54963 6.69050 6.92370 7.03557 8.31608 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.050699 B = 0.007549 C = 0.006930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.149158 B = 3708.160823 C = 4039.468069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.035 3.965 3 Si 0.981 3.019 4 H -0.261 1.261 5 H -0.266 1.266 6 H -0.259 1.259 7 C -0.504 4.504 8 H 0.074 0.926 9 C 0.080 3.920 10 C -0.196 4.196 11 C -0.111 4.111 12 C -0.230 4.230 13 C -0.075 4.075 14 C 0.124 3.876 15 N -0.814 5.814 16 C -0.123 4.123 17 C -0.113 4.113 18 C -0.125 4.125 19 C -0.240 4.240 20 H 0.287 0.713 21 H 0.097 0.903 22 H 0.108 0.892 23 H 0.119 0.881 24 H 0.341 0.659 25 H 0.344 0.656 26 H 0.074 0.926 27 H 0.064 0.936 28 H 0.087 0.913 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.955 -8.041 0.300 8.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.180 4.180 3 Si 0.802 3.198 4 H -0.186 1.186 5 H -0.190 1.190 6 H -0.183 1.183 7 C -0.534 4.534 8 H 0.092 0.908 9 C 0.078 3.922 10 C -0.216 4.216 11 C -0.130 4.130 12 C -0.249 4.249 13 C -0.077 4.077 14 C 0.030 3.970 15 N -0.343 5.343 16 C -0.162 4.162 17 C -0.150 4.150 18 C -0.162 4.162 19 C -0.260 4.260 20 H 0.098 0.902 21 H 0.115 0.885 22 H 0.126 0.874 23 H 0.137 0.863 24 H 0.155 0.845 25 H 0.157 0.843 26 H 0.092 0.908 27 H 0.082 0.918 28 H 0.106 0.894 29 H 0.097 0.903 30 H 0.090 0.910 31 H 0.105 0.895 32 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 1.630 -8.633 -0.033 8.786 hybrid contribution 0.129 2.208 0.397 2.247 sum 1.758 -6.425 0.363 6.671 Atomic orbital electron populations 1.69882 1.09058 1.30467 1.36038 1.26762 0.95474 1.04559 0.91195 0.85224 0.79100 0.75963 0.79541 1.18610 1.19042 1.18304 1.19806 0.98129 0.92572 1.42861 0.90827 1.17950 0.91906 0.93151 0.89198 1.21295 1.00500 0.97030 1.02744 1.20998 0.98892 0.93271 0.99817 1.20570 1.00813 0.96518 1.07003 1.20309 0.95623 0.95100 0.96706 1.20876 0.89376 0.89812 0.96917 1.58954 1.02988 1.51986 1.20340 1.22950 0.98110 0.96848 0.98246 1.22634 1.01705 0.95177 0.95473 1.23092 1.01944 0.94656 0.96532 1.20939 1.04522 0.92706 1.07800 0.90223 0.88493 0.87421 0.86338 0.84497 0.84340 0.90763 0.91751 0.89414 0.90341 0.90950 0.89474 0.88601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.46 10.95 21.83 0.24 -44.22 16 2 C 0.03 1.78 5.15 85.26 0.44 2.22 16 3 Si 0.98 38.88 29.59 68.60 2.03 40.91 16 4 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 5 H -0.27 -10.01 7.11 99.48 0.71 -9.30 16 6 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 7 C -0.50 -27.78 9.05 23.46 0.21 -27.57 16 8 H 0.07 3.90 7.90 -2.91 -0.02 3.88 16 9 C 0.08 4.42 5.57 -21.29 -0.12 4.30 16 10 C -0.20 -10.64 8.69 22.73 0.20 -10.44 16 11 C -0.11 -5.28 10.02 22.22 0.22 -5.06 16 12 C -0.23 -9.86 9.00 22.46 0.20 -9.66 16 13 C -0.08 -3.22 5.24 -19.92 -0.10 -3.32 16 14 C 0.12 4.15 1.49 3.31 0.00 4.15 16 15 N -0.81 -25.05 8.95 -152.43 -1.36 -26.42 16 16 C -0.12 -3.76 7.38 31.12 0.23 -3.53 16 17 C -0.11 -2.77 8.00 31.12 0.25 -2.52 16 18 C -0.12 -3.49 7.23 31.12 0.22 -3.26 16 19 C -0.24 -11.70 9.08 22.73 0.21 -11.50 16 20 H 0.29 13.92 8.30 -92.71 -0.77 13.15 16 21 H 0.10 5.52 6.17 -2.91 -0.02 5.50 16 22 H 0.11 4.50 8.06 -2.91 -0.02 4.48 16 23 H 0.12 4.34 6.20 -2.91 -0.02 4.33 16 24 H 0.34 11.02 7.12 -89.69 -0.64 10.38 16 25 H 0.34 9.98 9.07 -89.70 -0.81 9.16 16 26 H 0.07 2.36 7.96 -2.39 -0.02 2.34 16 27 H 0.06 1.95 8.14 -2.38 -0.02 1.93 16 28 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 29 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 30 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.09 2.45 5.96 -2.39 -0.01 2.43 16 32 H 0.10 4.39 6.26 -2.91 -0.02 4.37 16 Total: -1.00 -58.90 262.29 2.56 -56.34 By element: Atomic # 1 Polarization: 39.89 SS G_CDS: -0.31 Total: 39.58 kcal Atomic # 6 Polarization: -68.16 SS G_CDS: 1.97 Total: -66.19 kcal Atomic # 7 Polarization: -69.52 SS G_CDS: -1.12 Total: -70.64 kcal Atomic # 14 Polarization: 38.88 SS G_CDS: 2.03 Total: 40.91 kcal Total: -58.90 2.56 -56.34 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238567591.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.709 kcal (2) G-P(sol) polarization free energy of solvation -58.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds