Wall clock time and date at job start Mon Mar 30 2020 02:22:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86800 * 120.00197 * 2 1 4 4 H 1.48507 * 109.47094 * 239.99981 * 3 2 1 5 5 H 1.48498 * 109.47251 * 119.99837 * 3 2 1 6 6 H 1.48503 * 109.47024 * 359.97438 * 3 2 1 7 7 C 1.37881 * 120.00018 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00247 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99949 * 0.02562 * 7 2 1 10 10 N 1.46898 * 109.46951 * 180.02562 * 9 7 2 11 11 C 1.48560 * 111.00038 * 280.03191 * 10 9 7 12 12 C 1.54378 * 104.59798 * 200.96147 * 11 10 9 13 13 C 1.54257 * 105.05666 * 23.85380 * 12 11 10 14 14 C 1.48566 * 110.99868 * 164.61715 * 10 9 7 15 15 H 1.09003 * 110.41204 * 40.25993 * 14 10 9 16 16 C 1.52997 * 110.41050 * 277.81624 * 14 10 9 17 17 C 1.53002 * 109.46872 * 174.57136 * 16 14 10 18 18 Cl 1.80310 * 109.46946 * 185.04659 * 17 16 14 19 19 H 0.97006 * 120.00309 * 179.97438 * 1 2 3 20 20 H 1.09003 * 109.46963 * 299.99736 * 9 7 2 21 21 H 1.08991 * 109.47031 * 59.99562 * 9 7 2 22 22 H 1.08996 * 110.41298 * 319.74457 * 11 10 9 23 23 H 1.09009 * 110.40700 * 82.18329 * 11 10 9 24 24 H 1.09005 * 110.32455 * 264.96172 * 12 11 10 25 25 H 1.08994 * 110.40811 * 142.79450 * 12 11 10 26 26 H 1.09001 * 110.32480 * 241.10132 * 13 12 11 27 27 H 1.08997 * 110.41118 * 118.94175 * 13 12 11 28 28 H 1.08995 * 109.47510 * 294.57351 * 16 14 10 29 29 H 1.09006 * 109.47187 * 54.57218 * 16 14 10 30 30 H 1.08994 * 109.47097 * 305.04145 * 17 16 14 31 31 H 1.08996 * 109.47297 * 65.04695 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 3.1028 1.6964 1.2125 6 1 1.2841 2.7465 -0.0006 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2056 -3.6157 0.0018 11 6 2.7362 -3.8640 -1.3634 12 6 3.2551 -5.3173 -1.3208 13 6 2.4647 -5.9918 -0.1807 14 6 1.5348 -4.8892 0.3697 15 1 0.5528 -4.9510 -0.0993 16 6 1.4097 -5.0065 1.8901 17 6 0.5987 -6.2557 2.2402 18 17 0.3247 -6.3148 4.0213 19 1 -0.4851 -0.8401 -0.0004 20 1 0.6240 -2.5567 0.8903 21 1 0.6246 -2.5571 -0.8896 22 1 1.9423 -3.7653 -2.1037 23 1 3.5518 -3.1755 -1.5852 24 1 4.3227 -5.3319 -1.1016 25 1 3.0568 -5.8196 -2.2676 26 1 3.1444 -6.3375 0.5982 27 1 1.8771 -6.8248 -0.5664 28 1 2.4033 -5.0829 2.3316 29 1 0.9047 -4.1237 2.2823 30 1 -0.3617 -6.2213 1.7259 31 1 1.1468 -7.1444 1.9272 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238576216.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:09 Heat of formation + Delta-G solvation = -28.228655 kcal Electronic energy + Delta-G solvation = -12971.095874 eV Core-core repulsion = 10698.260218 eV Total energy + Delta-G solvation = -2272.835655 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 217.093 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.68702 -35.95366 -33.57111 -32.63632 -30.89983 -27.21935 -25.90333 -23.06178 -22.34170 -20.30942 -19.60699 -16.85551 -15.45401 -15.31912 -14.63398 -14.07171 -13.70759 -13.55642 -13.08145 -12.68550 -12.40180 -12.16965 -11.50174 -11.15502 -11.02271 -10.84927 -10.68434 -10.46301 -10.36784 -10.27734 -10.17759 -10.11178 -10.04019 -8.70945 -8.36435 -7.54909 -6.36456 -4.05152 2.35409 3.45073 3.47654 3.66132 4.49004 4.62774 4.86653 5.06198 5.09515 5.15935 5.33910 5.39767 5.50268 5.62578 5.72543 5.84813 5.99649 6.06421 6.22133 6.34515 6.47829 6.50800 6.54930 6.89996 6.96401 7.68529 7.89144 8.24934 8.58948 8.86970 9.65317 11.02505 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.026692 B = 0.008005 C = 0.006529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.737739 B = 3497.024226 C = 4287.395162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.013 3.987 3 Si 1.072 2.928 4 H -0.288 1.288 5 H -0.287 1.287 6 H -0.283 1.283 7 C -0.585 4.585 8 H 0.056 0.944 9 C 0.172 3.828 10 N -0.494 5.494 11 C 0.045 3.955 12 C -0.125 4.125 13 C -0.120 4.120 14 C 0.058 3.942 15 H 0.043 0.957 16 C -0.112 4.112 17 C -0.025 4.025 18 Cl -0.196 7.196 19 H 0.265 0.735 20 H 0.020 0.980 21 H -0.016 1.016 22 H 0.034 0.966 23 H 0.078 0.922 24 H 0.066 0.934 25 H 0.059 0.941 26 H 0.069 0.931 27 H 0.059 0.941 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.905 -12.865 0.755 13.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.190 4.190 3 Si 0.901 3.099 4 H -0.215 1.215 5 H -0.213 1.213 6 H -0.208 1.208 7 C -0.623 4.623 8 H 0.075 0.925 9 C 0.046 3.954 10 N -0.218 5.218 11 C -0.083 4.083 12 C -0.163 4.163 13 C -0.159 4.159 14 C -0.052 4.052 15 H 0.061 0.939 16 C -0.150 4.150 17 C -0.088 4.088 18 Cl -0.170 7.170 19 H 0.076 0.924 20 H 0.038 0.962 21 H 0.001 0.999 22 H 0.052 0.948 23 H 0.097 0.903 24 H 0.085 0.915 25 H 0.078 0.922 26 H 0.087 0.913 27 H 0.078 0.922 28 H 0.097 0.903 29 H 0.098 0.902 30 H 0.107 0.893 31 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 3.105 -11.053 1.265 11.551 hybrid contribution -0.578 -1.864 -0.547 2.026 sum 2.527 -12.917 0.718 13.181 Atomic orbital electron populations 1.70804 1.06885 1.30287 1.47148 1.25864 0.96486 1.02736 0.93955 0.83490 0.74797 0.75098 0.76560 1.21499 1.21348 1.20841 1.21935 0.94866 0.90800 1.54734 0.92534 1.20016 0.90828 0.89632 0.94931 1.65346 1.32882 1.01835 1.21762 1.22934 0.99430 0.94962 0.90989 1.22321 1.00141 0.96167 0.97716 1.22392 0.98149 0.97026 0.98286 1.22572 0.96156 0.92186 0.94255 0.93928 1.21779 1.00958 0.96429 0.95869 1.24396 1.02800 1.01473 0.80115 1.98706 1.97435 1.99140 1.21694 0.92440 0.96219 0.99879 0.94761 0.90317 0.91491 0.92177 0.91265 0.92187 0.90262 0.90186 0.89317 0.89196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.05 13.65 55.43 0.76 -27.29 16 2 C 0.01 0.37 5.46 -17.82 -0.10 0.28 16 3 Si 1.07 25.58 29.90 -169.99 -5.08 20.49 16 4 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.58 -16.78 9.14 -34.44 -0.31 -17.10 16 8 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 9 C 0.17 4.44 3.89 -4.98 -0.02 4.42 16 10 N -0.49 -10.57 4.97 -223.57 -1.11 -11.68 16 11 C 0.05 0.86 6.27 -2.18 -0.01 0.84 16 12 C -0.13 -1.82 7.00 -25.35 -0.18 -1.99 16 13 C -0.12 -1.65 5.96 -25.35 -0.15 -1.80 16 14 C 0.06 0.98 2.25 -66.07 -0.15 0.83 16 15 H 0.04 0.74 8.00 -51.93 -0.42 0.33 16 16 C -0.11 -1.76 4.99 -26.73 -0.13 -1.89 16 17 C -0.02 -0.30 6.47 37.16 0.24 -0.06 16 18 Cl -0.20 -2.67 29.15 -51.86 -1.51 -4.18 16 19 H 0.27 8.11 7.22 -40.82 -0.29 7.81 16 20 H 0.02 0.54 6.89 -51.93 -0.36 0.18 16 21 H -0.02 -0.45 7.51 -51.93 -0.39 -0.84 16 22 H 0.03 0.67 7.68 -51.93 -0.40 0.27 16 23 H 0.08 1.56 8.14 -51.92 -0.42 1.14 16 24 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 26 H 0.07 0.88 7.73 -51.93 -0.40 0.48 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.08 1.25 7.96 -51.93 -0.41 0.84 16 29 H 0.08 1.47 7.18 -51.93 -0.37 1.10 16 30 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 31 H 0.09 0.92 7.77 -51.93 -0.40 0.52 16 LS Contribution 266.86 15.07 4.02 4.02 Total: -1.00 -30.51 266.86 -8.51 -39.02 By element: Atomic # 1 Polarization: 0.86 SS G_CDS: -4.77 Total: -3.91 kcal Atomic # 6 Polarization: -15.65 SS G_CDS: -0.81 Total: -16.47 kcal Atomic # 7 Polarization: -38.62 SS G_CDS: -0.36 Total: -38.98 kcal Atomic # 14 Polarization: 25.58 SS G_CDS: -5.08 Total: 20.49 kcal Atomic # 17 Polarization: -2.67 SS G_CDS: -1.51 Total: -4.18 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -30.51 -8.51 -39.02 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238576216.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.790 kcal (2) G-P(sol) polarization free energy of solvation -30.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds