Wall clock time and date at job start Mon Mar 30 2020 02:22:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86800 * 120.00197 * 2 1 4 4 H 1.48507 * 109.47094 * 239.99981 * 3 2 1 5 5 H 1.48498 * 109.47251 * 119.99837 * 3 2 1 6 6 H 1.48503 * 109.47024 * 359.97438 * 3 2 1 7 7 C 1.37881 * 120.00018 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00247 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99949 * 0.02562 * 7 2 1 10 10 N 1.46898 * 109.46951 * 180.02562 * 9 7 2 11 11 C 1.48560 * 111.00038 * 280.03191 * 10 9 7 12 12 C 1.54378 * 104.59798 * 200.96147 * 11 10 9 13 13 C 1.54257 * 105.05666 * 23.85380 * 12 11 10 14 14 C 1.48566 * 110.99868 * 164.61715 * 10 9 7 15 15 H 1.09003 * 110.41204 * 40.25993 * 14 10 9 16 16 C 1.52997 * 110.41050 * 277.81624 * 14 10 9 17 17 C 1.53002 * 109.46872 * 174.57136 * 16 14 10 18 18 Cl 1.80310 * 109.46946 * 185.04659 * 17 16 14 19 19 H 0.97006 * 120.00309 * 179.97438 * 1 2 3 20 20 H 1.09003 * 109.46963 * 299.99736 * 9 7 2 21 21 H 1.08991 * 109.47031 * 59.99562 * 9 7 2 22 22 H 1.08996 * 110.41298 * 319.74457 * 11 10 9 23 23 H 1.09009 * 110.40700 * 82.18329 * 11 10 9 24 24 H 1.09005 * 110.32455 * 264.96172 * 12 11 10 25 25 H 1.08994 * 110.40811 * 142.79450 * 12 11 10 26 26 H 1.09001 * 110.32480 * 241.10132 * 13 12 11 27 27 H 1.08997 * 110.41118 * 118.94175 * 13 12 11 28 28 H 1.08995 * 109.47510 * 294.57351 * 16 14 10 29 29 H 1.09006 * 109.47187 * 54.57218 * 16 14 10 30 30 H 1.08994 * 109.47097 * 305.04145 * 17 16 14 31 31 H 1.08996 * 109.47297 * 65.04695 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 3.1028 1.6964 1.2125 6 1 1.2841 2.7465 -0.0006 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2056 -3.6157 0.0018 11 6 2.7362 -3.8640 -1.3634 12 6 3.2551 -5.3173 -1.3208 13 6 2.4647 -5.9918 -0.1807 14 6 1.5348 -4.8892 0.3697 15 1 0.5528 -4.9510 -0.0993 16 6 1.4097 -5.0065 1.8901 17 6 0.5987 -6.2557 2.2402 18 17 0.3247 -6.3148 4.0213 19 1 -0.4851 -0.8401 -0.0004 20 1 0.6240 -2.5567 0.8903 21 1 0.6246 -2.5571 -0.8896 22 1 1.9423 -3.7653 -2.1037 23 1 3.5518 -3.1755 -1.5852 24 1 4.3227 -5.3319 -1.1016 25 1 3.0568 -5.8196 -2.2676 26 1 3.1444 -6.3375 0.5982 27 1 1.8771 -6.8248 -0.5664 28 1 2.4033 -5.0829 2.3316 29 1 0.9047 -4.1237 2.2823 30 1 -0.3617 -6.2213 1.7259 31 1 1.1468 -7.1444 1.9272 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238576216.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:09 Heat of formation + Delta-G solvation = -47.838444 kcal Electronic energy + Delta-G solvation = -12971.946218 eV Core-core repulsion = 10698.260218 eV Total energy + Delta-G solvation = -2273.686000 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 217.093 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.14994 -37.04052 -35.60971 -33.96844 -32.57644 -28.49333 -27.88731 -24.76629 -23.88379 -21.81889 -20.94697 -18.97488 -16.93412 -16.70722 -15.82708 -15.68476 -15.52660 -14.98774 -14.65580 -14.30772 -13.75753 -13.54887 -13.21376 -12.82522 -12.55346 -12.47311 -12.19380 -12.06843 -11.92783 -11.70340 -11.43387 -11.32776 -11.26466 -10.81895 -10.59229 -9.31538 -8.70680 -6.41468 1.31989 1.51107 1.59784 1.79612 2.53796 3.10416 3.17302 3.62395 3.81248 3.92738 4.01669 4.15749 4.30794 4.35145 4.46104 4.59227 4.69219 4.78126 4.81457 4.91227 5.01013 5.09207 5.19013 5.23751 5.33305 5.77364 5.96778 6.21469 6.37551 6.59246 7.38808 8.67674 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.026692 B = 0.008005 C = 0.006529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.737739 B = 3497.024226 C = 4287.395162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.038 4.038 3 Si 1.120 2.880 4 H -0.268 1.268 5 H -0.271 1.271 6 H -0.282 1.282 7 C -0.599 4.599 8 H 0.050 0.950 9 C 0.187 3.813 10 N -0.511 5.511 11 C 0.038 3.962 12 C -0.114 4.114 13 C -0.111 4.111 14 C 0.052 3.948 15 H 0.036 0.964 16 C -0.105 4.105 17 C -0.015 4.015 18 Cl -0.206 7.206 19 H 0.252 0.748 20 H -0.002 1.002 21 H -0.042 1.042 22 H 0.020 0.980 23 H 0.062 0.938 24 H 0.079 0.921 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.093 0.907 28 H 0.079 0.921 29 H 0.041 0.959 30 H 0.097 0.903 31 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.214 -14.430 0.512 15.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.235 4.235 3 Si 0.941 3.059 4 H -0.193 1.193 5 H -0.196 1.196 6 H -0.207 1.207 7 C -0.637 4.637 8 H 0.069 0.931 9 C 0.060 3.940 10 N -0.235 5.235 11 C -0.090 4.090 12 C -0.152 4.152 13 C -0.149 4.149 14 C -0.057 4.057 15 H 0.054 0.946 16 C -0.143 4.143 17 C -0.077 4.077 18 Cl -0.180 7.180 19 H 0.061 0.939 20 H 0.016 0.984 21 H -0.024 1.024 22 H 0.038 0.962 23 H 0.080 0.920 24 H 0.097 0.903 25 H 0.105 0.895 26 H 0.104 0.896 27 H 0.112 0.888 28 H 0.097 0.903 29 H 0.060 0.940 30 H 0.116 0.884 31 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 4.424 -12.660 1.020 13.449 hybrid contribution -0.990 -1.411 -0.483 1.790 sum 3.434 -14.071 0.538 14.494 Atomic orbital electron populations 1.70935 1.07883 1.29522 1.49109 1.27442 0.96542 1.06739 0.92807 0.82895 0.74070 0.70915 0.78007 1.19349 1.19589 1.20723 1.22282 0.94775 0.92372 1.54291 0.93122 1.19656 0.90817 0.90967 0.92575 1.65242 1.32116 1.02715 1.23437 1.23003 0.98458 0.98227 0.89340 1.22296 1.00748 0.92641 0.99555 1.22411 0.97814 0.96333 0.98294 1.22728 0.96533 0.91289 0.95101 0.94640 1.21670 1.01086 0.96668 0.94923 1.24398 1.03170 1.00812 0.79368 1.98711 1.97462 1.99100 1.22716 0.93876 0.98420 1.02399 0.96164 0.91952 0.90263 0.89500 0.89584 0.88829 0.90281 0.94021 0.88449 0.85875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.07 13.65 21.45 0.29 -58.78 16 2 C -0.04 -2.26 5.46 84.66 0.46 -1.80 16 3 Si 1.12 51.46 29.90 68.60 2.05 53.51 16 4 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 5 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 6 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 7 C -0.60 -35.33 9.14 25.60 0.23 -35.10 16 8 H 0.05 2.98 7.81 -2.91 -0.02 2.96 16 9 C 0.19 10.09 3.89 85.56 0.33 10.43 16 10 N -0.51 -22.13 4.97 -861.23 -4.28 -26.42 16 11 C 0.04 1.43 6.27 86.45 0.54 1.97 16 12 C -0.11 -2.96 7.00 31.49 0.22 -2.74 16 13 C -0.11 -2.61 5.96 31.49 0.19 -2.42 16 14 C 0.05 1.72 2.25 45.06 0.10 1.82 16 15 H 0.04 1.22 8.00 -2.39 -0.02 1.20 16 16 C -0.11 -3.22 4.99 30.59 0.15 -3.07 16 17 C -0.01 -0.33 6.47 71.98 0.47 0.14 16 18 Cl -0.21 -5.33 29.15 -2.72 -0.08 -5.41 16 19 H 0.25 16.12 7.22 -92.70 -0.67 15.45 16 20 H 0.00 -0.12 6.89 -2.39 -0.02 -0.14 16 21 H -0.04 -2.40 7.51 -2.39 -0.02 -2.42 16 22 H 0.02 0.80 7.68 -2.39 -0.02 0.79 16 23 H 0.06 2.50 8.14 -2.38 -0.02 2.48 16 24 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 25 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 26 H 0.09 1.79 7.73 -2.39 -0.02 1.78 16 27 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.08 2.40 7.96 -2.39 -0.02 2.38 16 29 H 0.04 1.58 7.18 -2.38 -0.02 1.56 16 30 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.12 2.01 7.77 -2.39 -0.02 1.99 16 Total: -1.00 -68.10 266.86 1.87 -66.23 By element: Atomic # 1 Polarization: 0.44 SS G_CDS: 1.19 Total: 1.62 kcal Atomic # 6 Polarization: -33.46 SS G_CDS: 2.70 Total: -30.76 kcal Atomic # 7 Polarization: -81.20 SS G_CDS: -3.99 Total: -85.19 kcal Atomic # 14 Polarization: 51.46 SS G_CDS: 2.05 Total: 53.51 kcal Atomic # 17 Polarization: -5.33 SS G_CDS: -0.08 Total: -5.41 kcal Total: -68.10 1.87 -66.23 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238576216.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.396 kcal (2) G-P(sol) polarization free energy of solvation -68.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds