Wall clock time and date at job start Mon Mar 30 2020 02:20:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39541 * 120.11669 * 342.27761 * 3 2 1 5 5 C 1.38628 * 119.76994 * 180.02562 * 4 3 2 6 6 N 1.39706 * 120.00107 * 180.02562 * 5 4 3 7 7 C 1.39023 * 119.99842 * 359.97438 * 5 4 3 8 8 C 1.38213 * 120.23239 * 359.72784 * 7 5 4 9 9 C 1.38014 * 120.22861 * 0.55050 * 8 7 5 10 10 C 1.50701 * 119.99917 * 179.71971 * 9 8 7 11 11 H 1.09002 * 109.47060 * 144.72809 * 10 9 8 12 12 N 1.46901 * 109.46921 * 24.72628 * 10 9 8 13 13 C 1.50699 * 109.47269 * 264.72662 * 10 9 8 14 14 H 1.08000 * 119.99792 * 0.02562 * 13 10 9 15 15 C 1.37878 * 119.99902 * 179.97438 * 13 10 9 16 16 N 1.31515 * 120.00126 * 0.02562 * 15 13 10 17 17 Si 1.86803 * 119.99745 * 180.02562 * 15 13 10 18 18 H 1.48500 * 109.47256 * 90.00491 * 17 15 13 19 19 H 1.48506 * 109.46930 * 210.00332 * 17 15 13 20 20 H 1.48499 * 109.47104 * 330.00193 * 17 15 13 21 21 H 1.08005 * 120.11759 * 0.02562 * 4 3 2 22 22 H 0.97001 * 119.99915 * 0.02562 * 6 5 4 23 23 H 0.97002 * 120.00191 * 179.97438 * 6 5 4 24 24 H 1.08000 * 119.88629 * 180.02562 * 7 5 4 25 25 H 1.07998 * 119.88277 * 180.28950 * 8 7 5 26 26 H 1.00898 * 111.00245 * 299.99784 * 12 10 9 27 27 H 1.00904 * 111.00313 * 63.95601 * 12 10 9 28 28 H 0.96999 * 120.00073 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2686 -1.1488 0.3674 5 6 4.6549 -1.1400 0.3654 6 7 5.3612 -2.2883 0.7319 7 6 5.3421 0.0111 -0.0024 8 6 4.6482 1.1477 -0.3722 9 6 3.2680 1.1513 -0.3681 10 6 2.5166 2.3955 -0.7663 11 1 1.6060 2.1160 -1.2962 12 7 3.3608 3.2178 -1.6432 13 6 2.1581 3.1824 0.4679 14 1 2.4460 2.8183 1.4431 15 6 1.4635 4.3678 0.3521 16 7 1.1133 4.8115 -0.8354 17 14 1.0197 5.3436 1.8819 18 1 2.1112 6.3015 2.1920 19 1 -0.2416 6.0905 1.6440 20 1 0.8366 4.4145 3.0258 21 1 2.7328 -2.0422 0.6524 22 1 4.8817 -3.0918 0.9874 23 1 6.3312 -2.2823 0.7301 24 1 6.4221 0.0158 -0.0037 25 1 5.1878 2.0374 -0.6614 26 1 4.2119 3.4900 -1.1745 27 1 3.5618 2.7364 -2.5070 28 1 0.6243 5.6452 -0.9169 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238593609.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:53 Heat of formation + Delta-G solvation = 57.302006 kcal Electronic energy + Delta-G solvation = -13805.358741 eV Core-core repulsion = 11435.124480 eV Total energy + Delta-G solvation = -2370.234262 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.32336 -36.03116 -35.22302 -33.12777 -31.39326 -30.69470 -27.99940 -25.81681 -23.42998 -22.74874 -20.13712 -18.36767 -16.75194 -16.39851 -15.51879 -14.93379 -14.47029 -14.18426 -13.98631 -13.46552 -13.24675 -12.51948 -12.31708 -12.27578 -12.03150 -11.69650 -11.24289 -10.86961 -10.63815 -10.58092 -10.21018 -9.70792 -9.09375 -8.52532 -8.40350 -7.21936 -7.02530 -5.84772 -4.00510 1.32844 2.00262 3.36570 3.43122 3.43656 3.46948 3.62074 3.98056 4.44825 4.57262 4.66810 5.22942 5.36613 5.42457 5.72914 5.85107 6.13349 6.18760 6.29677 6.49028 6.85464 6.93487 7.14685 7.46249 7.65425 7.85940 7.92638 8.17177 8.26281 8.62265 8.99688 9.15031 9.68529 11.19091 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.032357 B = 0.009216 C = 0.008518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.135818 B = 3037.495680 C = 3286.226983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C 0.272 3.728 3 C 0.011 3.989 4 C -0.152 4.152 5 C 0.185 3.815 6 N -0.886 5.886 7 C -0.165 4.165 8 C -0.087 4.087 9 C -0.074 4.074 10 C 0.254 3.746 11 H 0.047 0.953 12 N -0.810 5.810 13 C -0.530 4.530 14 H 0.054 0.946 15 C 0.085 3.915 16 N -0.845 5.845 17 Si 0.883 3.117 18 H -0.280 1.280 19 H -0.287 1.287 20 H -0.275 1.275 21 H 0.120 0.880 22 H 0.394 0.606 23 H 0.395 0.605 24 H 0.117 0.883 25 H 0.127 0.873 26 H 0.319 0.681 27 H 0.300 0.700 28 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.310 -11.114 1.291 15.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.105 5.105 2 C -0.044 4.044 3 C 0.007 3.993 4 C -0.178 4.178 5 C 0.083 3.917 6 N -0.427 5.427 7 C -0.188 4.188 8 C -0.106 4.106 9 C -0.081 4.081 10 C 0.144 3.856 11 H 0.065 0.935 12 N -0.336 5.336 13 C -0.569 4.569 14 H 0.072 0.928 15 C -0.122 4.122 16 N -0.479 5.479 17 Si 0.711 3.289 18 H -0.206 1.206 19 H -0.213 1.213 20 H -0.200 1.200 21 H 0.138 0.862 22 H 0.222 0.778 23 H 0.222 0.778 24 H 0.135 0.865 25 H 0.145 0.855 26 H 0.132 0.868 27 H 0.110 0.890 28 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 7.789 -10.364 1.150 13.015 hybrid contribution 1.138 -0.461 1.140 1.676 sum 8.927 -10.824 2.291 14.216 Atomic orbital electron populations 1.81090 1.12275 1.08566 1.08530 1.25481 0.92621 0.92656 0.93594 1.15631 0.84418 0.94703 1.04545 1.20391 0.92078 0.97940 1.07341 1.17374 0.90615 0.87584 0.96160 1.42285 1.08406 1.12452 1.79544 1.20698 0.99148 0.92786 1.06146 1.20703 0.93446 0.97361 0.99048 1.21736 0.94183 0.96538 0.95656 1.18204 0.90787 0.83740 0.92885 0.93494 1.59123 1.21424 1.46861 1.06207 1.20764 1.38118 1.07020 0.90989 0.92759 1.24927 0.94836 0.97162 0.95245 1.70096 1.35998 1.20153 1.21673 0.86765 0.77876 0.80339 0.83968 1.20606 1.21298 1.20014 0.86169 0.77848 0.77773 0.86452 0.85530 0.86782 0.88955 0.93426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -9.81 18.54 41.84 0.78 -9.03 15 2 C 0.27 5.75 13.87 -22.48 -0.31 5.44 15 3 C 0.01 0.22 5.73 -106.97 -0.61 -0.40 15 4 C -0.15 -2.29 9.60 -38.95 -0.37 -2.67 15 5 C 0.18 2.44 6.75 -83.83 -0.57 1.88 15 6 N -0.89 -8.16 9.09 32.38 0.29 -7.87 15 7 C -0.16 -2.25 9.89 -39.30 -0.39 -2.64 15 8 C -0.09 -1.43 9.25 -39.67 -0.37 -1.79 15 9 C -0.07 -1.47 5.02 -104.18 -0.52 -2.00 15 10 C 0.25 6.14 2.36 -70.02 -0.17 5.98 15 11 H 0.05 1.30 7.27 -51.93 -0.38 0.93 15 12 N -0.81 -18.17 8.13 -6.65 -0.05 -18.23 15 13 C -0.53 -14.47 8.71 -34.44 -0.30 -14.77 15 14 H 0.05 1.49 7.74 -52.49 -0.41 1.09 15 15 C 0.09 2.41 5.39 -17.82 -0.10 2.31 15 16 N -0.84 -24.87 12.77 55.43 0.71 -24.16 15 17 Si 0.88 21.78 29.54 -169.99 -5.02 16.76 15 18 H -0.28 -6.77 7.11 56.52 0.40 -6.36 15 19 H -0.29 -7.09 7.11 56.52 0.40 -6.69 15 20 H -0.28 -6.79 7.11 56.52 0.40 -6.38 15 21 H 0.12 1.55 8.06 -52.48 -0.42 1.12 15 22 H 0.39 2.96 8.84 -40.82 -0.36 2.60 15 23 H 0.39 2.82 8.84 -40.82 -0.36 2.46 15 24 H 0.12 1.28 8.06 -52.49 -0.42 0.85 15 25 H 0.13 1.95 6.27 -52.49 -0.33 1.62 15 26 H 0.32 6.62 7.20 -39.29 -0.28 6.34 15 27 H 0.30 5.94 9.06 -39.29 -0.36 5.59 15 28 H 0.26 7.24 8.31 -40.82 -0.34 6.90 15 LS Contribution 255.59 15.07 3.85 3.85 Total: -1.00 -31.67 255.59 -5.60 -37.27 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -2.45 Total: 10.05 kcal Atomic # 6 Polarization: -4.95 SS G_CDS: -3.70 Total: -8.65 kcal Atomic # 7 Polarization: -61.01 SS G_CDS: 1.72 Total: -59.29 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -31.67 -5.60 -37.27 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238593609.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.575 kcal (2) G-P(sol) polarization free energy of solvation -31.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.273 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds