Wall clock time and date at job start Mon Mar 30 2020 03:27:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86790 * 120.00034 * 2 1 4 4 H 1.48499 * 109.47294 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47473 * 299.99853 * 3 2 1 6 6 H 1.48502 * 109.47060 * 60.00308 * 3 2 1 7 7 C 1.37878 * 119.99780 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99917 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00198 * 359.97438 * 7 2 1 10 10 H 1.08999 * 109.47706 * 300.00204 * 9 7 2 11 11 N 1.46906 * 109.47064 * 60.00000 * 9 7 2 12 12 C 1.50701 * 109.47065 * 180.02562 * 9 7 2 13 13 C 1.38153 * 119.89438 * 264.72522 * 12 9 7 14 14 C 1.38207 * 119.93525 * 179.74947 * 13 12 9 15 15 C 1.38143 * 119.93282 * 0.50312 * 14 13 12 16 16 C 1.38454 * 120.21969 * 359.77424 * 15 14 13 17 17 C 1.38263 * 119.84399 * 359.97388 * 16 15 14 18 18 C 1.51371 * 109.74817 * 179.97438 * 17 16 15 19 19 C 1.54344 * 105.17506 * 17.18822 * 18 17 16 20 20 C 1.51364 * 130.40355 * 179.97438 * 16 15 14 21 21 H 0.97003 * 119.99844 * 0.02562 * 1 2 3 22 22 H 1.00896 * 111.00309 * 296.04459 * 11 9 7 23 23 H 1.00902 * 110.99923 * 60.00622 * 11 9 7 24 24 H 1.08002 * 120.03128 * 359.97438 * 13 12 9 25 25 H 1.07997 * 120.03367 * 180.23381 * 14 13 12 26 26 H 1.08003 * 119.88974 * 179.74957 * 15 14 13 27 27 H 1.09000 * 110.30092 * 136.11305 * 18 17 16 28 28 H 1.08998 * 110.30052 * 258.26128 * 18 17 16 29 29 H 1.09005 * 110.82052 * 91.87165 * 19 18 17 30 30 H 1.08996 * 110.82201 * 215.21952 * 19 18 17 31 31 H 1.09008 * 110.29605 * 43.92210 * 20 16 15 32 32 H 1.09000 * 110.39012 * 281.81783 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6247 -2.5572 0.8896 11 7 0.4060 -2.5767 -1.1997 12 6 2.2303 -3.6446 -0.0005 13 6 2.5941 -4.2395 -1.1932 14 6 3.4961 -5.2866 -1.1946 15 6 4.0242 -5.7432 -0.0026 16 6 3.6565 -5.1521 1.1942 17 6 2.7582 -4.1011 1.1952 18 6 2.5203 -3.6329 2.6148 19 6 3.6923 -4.2142 3.4338 20 6 4.0839 -5.4610 2.6131 21 1 -0.4850 0.8401 -0.0004 22 1 -0.3014 -1.8573 -1.1908 23 1 0.9637 -2.5252 -2.0390 24 1 2.1768 -3.8842 -2.1238 25 1 3.7844 -5.7504 -2.1264 26 1 4.7259 -6.5642 -0.0042 27 1 2.5304 -2.5439 2.6606 28 1 1.5711 -4.0190 2.9864 29 1 4.5201 -3.5066 3.4815 30 1 3.3646 -4.4926 4.4353 31 1 5.1614 -5.6199 2.6573 32 1 3.5571 -6.3396 2.9856 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238602993.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:28 Heat of formation + Delta-G solvation = 8.289846 kcal Electronic energy + Delta-G solvation = -14425.564217 eV Core-core repulsion = 12156.744972 eV Total energy + Delta-G solvation = -2268.819245 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 217.116 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.49686 -35.57490 -34.28926 -31.66260 -29.65067 -28.37336 -26.54142 -25.90548 -22.90732 -21.15036 -20.17690 -18.96404 -16.49240 -15.90576 -15.20857 -14.70653 -14.52604 -13.95998 -13.55895 -12.90057 -12.51856 -12.37064 -11.98206 -11.94653 -11.31243 -11.26019 -10.98924 -10.93369 -10.69195 -10.48214 -10.40469 -10.27398 -9.95710 -9.40111 -8.67056 -7.80280 -7.74874 -7.17499 -6.08292 -4.24903 2.10931 2.21698 3.20460 3.29450 3.34723 4.30369 4.55992 4.96314 5.10152 5.14317 5.37971 5.60453 5.69149 5.80743 5.91445 6.00623 6.14576 6.18278 6.25599 6.41703 6.53061 6.63605 6.68563 6.84546 6.92263 7.17884 7.29217 7.33852 7.75027 7.75852 7.86783 8.12321 8.69023 8.94836 9.12620 9.46711 10.88795 Molecular weight = 217.12amu Principal moments of inertia in cm(-1) A = 0.030151 B = 0.009975 C = 0.008642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.445395 B = 2806.361785 C = 3239.134712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.065 3.935 3 Si 0.895 3.105 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.537 4.537 8 H 0.055 0.945 9 C 0.240 3.760 10 H 0.048 0.952 11 N -0.852 5.852 12 C -0.016 4.016 13 C -0.113 4.113 14 C -0.129 4.129 15 C -0.136 4.136 16 C -0.111 4.111 17 C -0.094 4.094 18 C -0.080 4.080 19 C -0.120 4.120 20 C -0.076 4.076 21 H 0.264 0.736 22 H 0.355 0.645 23 H 0.311 0.689 24 H 0.121 0.879 25 H 0.111 0.889 26 H 0.105 0.895 27 H 0.083 0.917 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.807 -7.652 2.660 9.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.137 4.137 3 Si 0.723 3.277 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.577 4.577 8 H 0.074 0.926 9 C 0.130 3.870 10 H 0.066 0.934 11 N -0.382 5.382 12 C -0.016 4.016 13 C -0.132 4.132 14 C -0.147 4.147 15 C -0.154 4.154 16 C -0.111 4.111 17 C -0.094 4.094 18 C -0.117 4.117 19 C -0.158 4.158 20 C -0.113 4.113 21 H 0.074 0.926 22 H 0.171 0.829 23 H 0.121 0.879 24 H 0.139 0.861 25 H 0.129 0.871 26 H 0.123 0.877 27 H 0.102 0.898 28 H 0.089 0.911 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.424 -8.251 2.951 10.305 hybrid contribution 0.865 1.956 -0.303 2.160 sum 6.289 -6.295 2.648 9.284 Atomic orbital electron populations 1.69758 1.05810 1.27026 1.50710 1.25019 0.94929 0.99244 0.94495 0.86488 0.80211 0.83372 0.77672 1.19739 1.20960 1.20858 1.21818 0.93628 0.90903 1.51372 0.92644 1.17963 0.89076 0.88380 0.91601 0.93432 1.59568 1.18499 1.56016 1.04095 1.20054 0.95631 0.95045 0.90918 1.20872 0.97722 0.96295 0.98291 1.20902 0.98611 0.98199 0.96964 1.20304 1.02267 1.01139 0.91699 1.20458 0.98927 0.97406 0.94272 1.20290 0.97899 0.96498 0.94736 1.20960 0.97707 1.02008 0.90985 1.22280 0.98615 0.96833 0.98045 1.20948 1.00390 0.98275 0.91663 0.92557 0.82907 0.87927 0.86097 0.87089 0.87673 0.89810 0.91082 0.91396 0.91293 0.91686 0.91094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.58 11.54 55.43 0.64 -23.95 16 2 C 0.07 1.76 5.38 -17.82 -0.10 1.66 16 3 Si 0.89 21.01 29.54 -169.99 -5.02 15.99 16 4 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.54 -14.50 8.71 -34.44 -0.30 -14.80 16 8 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 9 C 0.24 6.05 2.77 -70.01 -0.19 5.85 16 10 H 0.05 1.32 7.83 -51.93 -0.41 0.91 16 11 N -0.85 -20.59 8.78 -6.65 -0.06 -20.65 16 12 C -0.02 -0.36 5.00 -104.58 -0.52 -0.88 16 13 C -0.11 -2.33 9.26 -39.62 -0.37 -2.69 16 14 C -0.13 -2.29 10.05 -39.63 -0.40 -2.69 16 15 C -0.14 -2.34 10.04 -39.54 -0.40 -2.74 16 16 C -0.11 -2.00 6.14 -104.21 -0.64 -2.64 16 17 C -0.09 -1.93 6.00 -104.21 -0.63 -2.56 16 18 C -0.08 -1.46 6.21 -26.85 -0.17 -1.62 16 19 C -0.12 -1.75 7.08 -25.33 -0.18 -1.93 16 20 C -0.08 -1.10 6.77 -26.86 -0.18 -1.28 16 21 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 22 H 0.35 9.13 7.08 -39.29 -0.28 8.85 16 23 H 0.31 7.12 7.20 -39.29 -0.28 6.84 16 24 H 0.12 2.39 6.28 -52.49 -0.33 2.06 16 25 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 26 H 0.11 1.51 8.06 -52.48 -0.42 1.08 16 27 H 0.08 1.68 8.14 -51.93 -0.42 1.25 16 28 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.06 0.84 8.14 -51.92 -0.42 0.41 16 32 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 263.98 15.07 3.98 3.98 Total: -1.00 -27.97 263.98 -8.75 -36.72 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: -4.22 Total: 14.22 kcal Atomic # 6 Polarization: -22.25 SS G_CDS: -4.07 Total: -26.31 kcal Atomic # 7 Polarization: -45.17 SS G_CDS: 0.58 Total: -44.59 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -27.97 -8.75 -36.72 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238602993.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.007 kcal (2) G-P(sol) polarization free energy of solvation -27.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds