Wall clock time and date at job start Mon Mar 30 2020 02:20:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39544 * 120.11584 * 29.61618 * 3 2 1 5 5 C 1.38620 * 119.76766 * 180.27608 * 4 3 2 6 6 N 1.39708 * 120.00403 * 179.70068 * 5 4 3 7 7 C 1.39037 * 119.99941 * 359.71982 * 5 4 3 8 8 C 1.38206 * 120.23091 * 359.97438 * 7 5 4 9 9 C 1.38015 * 120.23116 * 0.02562 * 8 7 5 10 10 C 1.50702 * 119.99957 * 179.97438 * 9 8 7 11 11 H 1.09003 * 109.47211 * 220.00147 * 10 9 8 12 12 N 1.46904 * 109.47148 * 339.99621 * 10 9 8 13 13 C 1.50696 * 109.47387 * 99.99676 * 10 9 8 14 14 H 1.08004 * 119.99425 * 354.51573 * 13 10 9 15 15 C 1.37874 * 120.00293 * 174.50539 * 13 10 9 16 16 N 1.31513 * 119.99809 * 163.73253 * 15 13 10 17 17 Si 1.86803 * 119.99857 * 343.73918 * 15 13 10 18 18 H 1.48501 * 109.46722 * 179.97438 * 17 15 13 19 19 H 1.48500 * 109.47028 * 299.99456 * 17 15 13 20 20 H 1.48497 * 109.47057 * 59.99966 * 17 15 13 21 21 H 1.08003 * 120.11652 * 359.97438 * 4 3 2 22 22 H 0.96998 * 120.00208 * 180.02562 * 6 5 4 23 23 H 0.97009 * 119.99734 * 0.02562 * 6 5 4 24 24 H 1.08001 * 119.88456 * 179.97438 * 7 5 4 25 25 H 1.08000 * 119.88353 * 180.02562 * 8 7 5 26 26 H 1.00904 * 110.99471 * 66.16761 * 12 10 9 27 27 H 1.00901 * 110.99943 * 190.11646 * 12 10 9 28 28 H 0.96993 * 120.00340 * 0.99356 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2686 -1.0484 -0.5965 5 6 4.6548 -1.0434 -0.5873 6 7 5.3612 -2.0943 -1.1776 7 6 5.3422 0.0074 0.0097 8 6 4.6483 1.0496 0.5949 9 6 3.2681 1.0542 0.5912 10 6 2.5167 2.1929 1.2314 11 1 1.6505 1.8021 1.7654 12 7 3.3988 2.8926 2.1751 13 6 2.0580 3.1544 0.1655 14 1 2.3622 3.0083 -0.8605 15 6 1.2499 4.2202 0.4999 16 7 1.1087 5.2259 -0.3357 17 14 0.3557 4.2358 2.1399 18 1 -0.4414 5.4832 2.2572 19 1 -0.5484 3.0605 2.2220 20 1 1.3465 4.1763 3.2445 21 1 2.7328 -1.8639 -1.0595 22 1 6.3312 -2.0909 -1.1708 23 1 4.8816 -2.8274 -1.5942 24 1 6.4222 0.0093 0.0162 25 1 5.1879 1.8632 1.0568 26 1 4.1568 3.3496 1.6905 27 1 2.8789 3.5509 2.7359 28 1 1.5615 5.2112 -1.1933 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238620700.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:56 Heat of formation + Delta-G solvation = 52.102352 kcal Electronic energy + Delta-G solvation = -13873.454772 eV Core-core repulsion = 11502.995036 eV Total energy + Delta-G solvation = -2370.459735 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.30441 -36.08936 -35.33197 -33.36352 -31.68656 -30.73779 -28.27072 -25.63502 -23.50371 -22.45131 -19.98650 -18.35410 -17.75352 -16.78238 -15.57797 -15.25197 -14.44120 -14.05910 -13.85023 -13.48600 -12.76118 -12.70803 -12.48193 -12.33279 -12.27205 -11.95019 -11.82524 -10.85679 -10.60156 -10.25859 -10.16394 -9.85974 -9.29638 -8.50454 -8.48088 -7.68353 -7.15831 -6.47288 -4.24346 1.34591 2.04446 3.24511 3.39191 3.40318 3.52723 3.62365 3.99846 4.36242 4.50862 4.64826 5.14326 5.27106 5.45582 5.54763 5.87821 6.11953 6.13628 6.28550 6.49299 6.66946 6.90622 7.15561 7.28079 7.66609 7.75432 7.88219 8.18938 8.22180 8.34474 8.47708 8.80938 9.47620 10.80472 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.036173 B = 0.009797 C = 0.008752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.880899 B = 2857.243298 C = 3198.333983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C 0.272 3.728 3 C 0.008 3.992 4 C -0.154 4.154 5 C 0.186 3.814 6 N -0.886 5.886 7 C -0.168 4.168 8 C -0.067 4.067 9 C -0.024 4.024 10 C 0.210 3.790 11 H 0.041 0.959 12 N -0.856 5.856 13 C -0.624 4.624 14 H 0.059 0.941 15 C 0.036 3.964 16 N -0.896 5.896 17 Si 1.039 2.961 18 H -0.282 1.282 19 H -0.280 1.280 20 H -0.273 1.273 21 H 0.121 0.879 22 H 0.395 0.605 23 H 0.394 0.606 24 H 0.118 0.882 25 H 0.133 0.867 26 H 0.329 0.671 27 H 0.331 0.669 28 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.773 -11.218 1.010 14.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.107 5.107 2 C -0.043 4.043 3 C 0.003 3.997 4 C -0.179 4.179 5 C 0.084 3.916 6 N -0.427 5.427 7 C -0.192 4.192 8 C -0.086 4.086 9 C -0.029 4.029 10 C 0.100 3.900 11 H 0.059 0.941 12 N -0.388 5.388 13 C -0.663 4.663 14 H 0.077 0.923 15 C -0.171 4.171 16 N -0.529 5.529 17 Si 0.867 3.133 18 H -0.208 1.208 19 H -0.206 1.206 20 H -0.200 1.200 21 H 0.139 0.861 22 H 0.222 0.778 23 H 0.221 0.779 24 H 0.136 0.864 25 H 0.151 0.849 26 H 0.141 0.859 27 H 0.145 0.855 28 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 7.065 -10.981 2.292 13.257 hybrid contribution 1.317 -0.279 -1.860 2.296 sum 8.382 -11.260 0.432 14.044 Atomic orbital electron populations 1.81091 1.12284 1.08837 1.08498 1.25528 0.92676 0.92614 0.93493 1.15576 0.84294 0.96587 1.03224 1.20308 0.92068 0.99698 1.05827 1.17383 0.90587 0.89129 0.94492 1.42286 1.08411 1.24753 1.67216 1.20748 0.99236 0.95319 1.03855 1.20689 0.93235 0.97476 0.97151 1.20013 0.93528 0.93606 0.95706 1.18252 0.90362 0.90145 0.91192 0.94100 1.59755 1.15414 1.35768 1.27854 1.22518 1.35850 1.12220 0.95743 0.92278 1.25760 0.95091 0.91709 1.04569 1.70841 1.43290 1.28799 1.09954 0.84078 0.77286 0.76770 0.75189 1.20780 1.20635 1.19971 0.86122 0.77758 0.77867 0.86375 0.84891 0.85917 0.85476 0.91998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -9.96 18.54 41.84 0.78 -9.19 15 2 C 0.27 5.84 13.79 -22.47 -0.31 5.53 15 3 C 0.01 0.14 5.73 -106.96 -0.61 -0.47 15 4 C -0.15 -2.38 9.60 -38.95 -0.37 -2.75 15 5 C 0.19 2.53 6.75 -83.83 -0.57 1.97 15 6 N -0.89 -8.41 9.09 32.39 0.29 -8.11 15 7 C -0.17 -2.38 9.89 -39.30 -0.39 -2.77 15 8 C -0.07 -1.14 9.25 -39.67 -0.37 -1.51 15 9 C -0.02 -0.48 5.06 -104.18 -0.53 -1.00 15 10 C 0.21 4.88 1.97 -70.02 -0.14 4.75 15 11 H 0.04 1.02 6.15 -51.93 -0.32 0.70 15 12 N -0.86 -17.88 8.50 -6.65 -0.06 -17.93 15 13 C -0.62 -16.94 8.73 -34.44 -0.30 -17.24 15 14 H 0.06 1.76 7.99 -52.48 -0.42 1.34 15 15 C 0.04 1.01 5.44 -17.82 -0.10 0.91 15 16 N -0.90 -27.06 13.70 55.43 0.76 -26.30 15 17 Si 1.04 25.13 26.54 -169.99 -4.51 20.62 15 18 H -0.28 -6.89 7.11 56.52 0.40 -6.49 15 19 H -0.28 -6.88 7.11 56.52 0.40 -6.48 15 20 H -0.27 -5.86 5.53 56.52 0.31 -5.55 15 21 H 0.12 1.59 8.06 -52.48 -0.42 1.17 15 22 H 0.39 2.92 8.84 -40.82 -0.36 2.56 15 23 H 0.39 3.05 8.84 -40.82 -0.36 2.69 15 24 H 0.12 1.33 8.06 -52.49 -0.42 0.90 15 25 H 0.13 2.15 6.40 -52.49 -0.34 1.81 15 26 H 0.33 6.51 7.59 -39.29 -0.30 6.22 15 27 H 0.33 7.05 5.67 -39.29 -0.22 6.82 15 28 H 0.27 8.15 8.72 -40.82 -0.36 7.79 15 LS Contribution 248.62 15.07 3.75 3.75 Total: -1.00 -31.17 248.62 -5.08 -36.24 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: -2.40 Total: 13.50 kcal Atomic # 6 Polarization: -8.90 SS G_CDS: -3.68 Total: -12.58 kcal Atomic # 7 Polarization: -63.30 SS G_CDS: 1.77 Total: -61.53 kcal Atomic # 14 Polarization: 25.13 SS G_CDS: -4.51 Total: 20.62 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -31.17 -5.08 -36.24 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238620700.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.344 kcal (2) G-P(sol) polarization free energy of solvation -31.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds