Wall clock time and date at job start Mon Mar 30 2020 02:20:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39544 * 120.11584 * 29.61618 * 3 2 1 5 5 C 1.38620 * 119.76766 * 180.27608 * 4 3 2 6 6 N 1.39708 * 120.00403 * 179.70068 * 5 4 3 7 7 C 1.39037 * 119.99941 * 359.71982 * 5 4 3 8 8 C 1.38206 * 120.23091 * 359.97438 * 7 5 4 9 9 C 1.38015 * 120.23116 * 0.02562 * 8 7 5 10 10 C 1.50702 * 119.99957 * 179.97438 * 9 8 7 11 11 H 1.09003 * 109.47211 * 220.00147 * 10 9 8 12 12 N 1.46904 * 109.47148 * 339.99621 * 10 9 8 13 13 C 1.50696 * 109.47387 * 99.99676 * 10 9 8 14 14 H 1.08004 * 119.99425 * 354.51573 * 13 10 9 15 15 C 1.37874 * 120.00293 * 174.50539 * 13 10 9 16 16 N 1.31513 * 119.99809 * 163.73253 * 15 13 10 17 17 Si 1.86803 * 119.99857 * 343.73918 * 15 13 10 18 18 H 1.48501 * 109.46722 * 179.97438 * 17 15 13 19 19 H 1.48500 * 109.47028 * 299.99456 * 17 15 13 20 20 H 1.48497 * 109.47057 * 59.99966 * 17 15 13 21 21 H 1.08003 * 120.11652 * 359.97438 * 4 3 2 22 22 H 0.96998 * 120.00208 * 180.02562 * 6 5 4 23 23 H 0.97009 * 119.99734 * 0.02562 * 6 5 4 24 24 H 1.08001 * 119.88456 * 179.97438 * 7 5 4 25 25 H 1.08000 * 119.88353 * 180.02562 * 8 7 5 26 26 H 1.00904 * 110.99471 * 66.16761 * 12 10 9 27 27 H 1.00901 * 110.99943 * 190.11646 * 12 10 9 28 28 H 0.96993 * 120.00340 * 0.99356 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2686 -1.0484 -0.5965 5 6 4.6548 -1.0434 -0.5873 6 7 5.3612 -2.0943 -1.1776 7 6 5.3422 0.0074 0.0097 8 6 4.6483 1.0496 0.5949 9 6 3.2681 1.0542 0.5912 10 6 2.5167 2.1929 1.2314 11 1 1.6505 1.8021 1.7654 12 7 3.3988 2.8926 2.1751 13 6 2.0580 3.1544 0.1655 14 1 2.3622 3.0083 -0.8605 15 6 1.2499 4.2202 0.4999 16 7 1.1087 5.2259 -0.3357 17 14 0.3557 4.2358 2.1399 18 1 -0.4414 5.4832 2.2572 19 1 -0.5484 3.0605 2.2220 20 1 1.3465 4.1763 3.2445 21 1 2.7328 -1.8639 -1.0595 22 1 6.3312 -2.0909 -1.1708 23 1 4.8816 -2.8274 -1.5942 24 1 6.4222 0.0093 0.0162 25 1 5.1879 1.8632 1.0568 26 1 4.1568 3.3496 1.6905 27 1 2.8789 3.5509 2.7359 28 1 1.5615 5.2112 -1.1933 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238620700.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:55 Heat of formation + Delta-G solvation = 27.661251 kcal Electronic energy + Delta-G solvation = -13874.514618 eV Core-core repulsion = 11502.995036 eV Total energy + Delta-G solvation = -2371.519581 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.62592 -37.60495 -37.03190 -34.88601 -33.56668 -32.05665 -29.60563 -27.51454 -24.88260 -24.00947 -21.58065 -19.86729 -19.66983 -17.93387 -17.03325 -16.54400 -15.86462 -15.59112 -15.42948 -15.16703 -14.65275 -14.27417 -14.10567 -13.99043 -13.70557 -13.55229 -13.50341 -12.59833 -12.09789 -11.95679 -11.88345 -11.40851 -11.14268 -10.65399 -9.78424 -9.51752 -8.81291 -8.16855 -6.47139 -0.00578 0.75924 1.30473 1.43275 1.59668 1.74105 2.11881 2.33968 2.91875 2.99014 3.12749 3.30620 3.98853 4.10863 4.31303 4.47153 4.61560 4.82850 4.97788 5.11332 5.30760 5.55343 5.69645 5.82132 5.92622 5.97506 6.43312 6.53449 6.57788 6.69498 6.85259 7.16911 7.31500 8.55156 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.036173 B = 0.009797 C = 0.008752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.880899 B = 2857.243298 C = 3198.333983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C 0.282 3.718 3 C -0.016 4.016 4 C -0.152 4.152 5 C 0.204 3.796 6 N -0.864 5.864 7 C -0.157 4.157 8 C -0.070 4.070 9 C -0.063 4.063 10 C 0.217 3.783 11 H 0.022 0.978 12 N -0.839 5.839 13 C -0.612 4.612 14 H 0.021 0.979 15 C -0.013 4.013 16 N -0.930 5.930 17 Si 1.072 2.928 18 H -0.285 1.285 19 H -0.289 1.289 20 H -0.227 1.227 21 H 0.143 0.857 22 H 0.410 0.590 23 H 0.406 0.594 24 H 0.157 0.843 25 H 0.139 0.861 26 H 0.337 0.663 27 H 0.328 0.672 28 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.354 -13.191 1.663 18.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.153 5.153 2 C -0.032 4.032 3 C -0.020 4.020 4 C -0.178 4.178 5 C 0.099 3.901 6 N -0.406 5.406 7 C -0.180 4.180 8 C -0.089 4.089 9 C -0.068 4.068 10 C 0.106 3.894 11 H 0.040 0.960 12 N -0.370 5.370 13 C -0.652 4.652 14 H 0.039 0.961 15 C -0.213 4.213 16 N -0.566 5.566 17 Si 0.895 3.105 18 H -0.211 1.211 19 H -0.216 1.216 20 H -0.151 1.151 21 H 0.161 0.839 22 H 0.241 0.759 23 H 0.236 0.764 24 H 0.175 0.825 25 H 0.157 0.843 26 H 0.149 0.851 27 H 0.143 0.857 28 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 9.711 -13.001 2.932 16.490 hybrid contribution 0.677 0.174 -2.192 2.301 sum 10.387 -12.827 0.740 16.522 Atomic orbital electron populations 1.81071 1.13555 1.10359 1.10333 1.26134 0.93393 0.91406 0.92253 1.15780 0.83017 0.98138 1.05071 1.20503 0.93081 0.99087 1.05085 1.17447 0.90024 0.89620 0.92998 1.42264 1.09322 1.23573 1.65449 1.21081 1.01056 0.93933 1.01916 1.20789 0.91888 0.98726 0.97505 1.19832 0.94916 0.93643 0.98419 1.18018 0.90746 0.90581 0.90036 0.96049 1.59686 1.14791 1.35611 1.26879 1.22679 1.34627 1.12786 0.95115 0.96093 1.26958 0.95718 0.91613 1.07004 1.70956 1.45041 1.30496 1.10083 0.83676 0.77263 0.76023 0.73564 1.21083 1.21591 1.15117 0.83942 0.75910 0.76402 0.82522 0.84293 0.85057 0.85748 0.93578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -22.64 18.54 19.00 0.35 -22.28 15 2 C 0.28 12.32 13.79 88.33 1.22 13.54 15 3 C -0.02 -0.59 5.73 -21.38 -0.12 -0.71 15 4 C -0.15 -4.30 9.60 22.68 0.22 -4.08 15 5 C 0.20 4.68 6.75 38.17 0.26 4.93 15 6 N -0.86 -11.84 9.09 -51.45 -0.47 -12.31 15 7 C -0.16 -3.75 9.89 22.45 0.22 -3.53 15 8 C -0.07 -2.23 9.25 22.21 0.21 -2.02 15 9 C -0.06 -2.50 5.06 -19.58 -0.10 -2.60 15 10 C 0.22 10.08 1.97 43.42 0.09 10.17 15 11 H 0.02 1.09 6.15 -2.39 -0.01 1.07 15 12 N -0.84 -33.93 8.50 -174.94 -1.49 -35.42 15 13 C -0.61 -34.16 8.73 25.60 0.22 -33.93 15 14 H 0.02 1.30 7.99 -2.91 -0.02 1.27 15 15 C -0.01 -0.73 5.44 84.65 0.46 -0.27 15 16 N -0.93 -58.12 13.70 21.45 0.29 -57.83 15 17 Si 1.07 51.15 26.54 68.60 1.82 52.97 15 18 H -0.28 -13.67 7.11 99.48 0.71 -12.96 15 19 H -0.29 -14.18 7.11 99.48 0.71 -13.47 15 20 H -0.23 -9.09 5.53 99.48 0.55 -8.54 15 21 H 0.14 3.32 8.06 -2.91 -0.02 3.30 15 22 H 0.41 3.67 8.84 -92.71 -0.82 2.85 15 23 H 0.41 4.21 8.84 -92.70 -0.82 3.39 15 24 H 0.16 2.57 8.06 -2.91 -0.02 2.55 15 25 H 0.14 4.15 6.40 -2.91 -0.02 4.13 15 26 H 0.34 12.88 7.59 -89.69 -0.68 12.20 15 27 H 0.33 13.39 5.67 -89.69 -0.51 12.88 15 28 H 0.26 16.15 8.72 -92.71 -0.81 15.35 15 Total: -1.00 -70.76 248.62 1.40 -69.36 By element: Atomic # 1 Polarization: 25.79 SS G_CDS: -1.78 Total: 24.02 kcal Atomic # 6 Polarization: -21.18 SS G_CDS: 2.67 Total: -18.51 kcal Atomic # 7 Polarization: -126.52 SS G_CDS: -1.31 Total: -127.83 kcal Atomic # 14 Polarization: 51.15 SS G_CDS: 1.82 Total: 52.97 kcal Total: -70.76 1.40 -69.36 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238620700.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.019 kcal (2) G-P(sol) polarization free energy of solvation -70.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds