Wall clock time and date at job start Mon Mar 30 2020 03:20:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.08002 * 120.00482 * 359.72746 * 7 2 1 9 9 C 1.50702 * 120.00072 * 179.72119 * 7 2 1 10 10 C 1.52999 * 109.47522 * 180.02562 * 9 7 2 11 11 H 1.08998 * 109.46267 * 304.98056 * 10 9 7 12 12 N 1.46844 * 109.46109 * 64.94977 * 10 9 7 13 13 C 1.46850 * 111.19757 * 181.75831 * 12 10 9 14 14 C 1.53034 * 109.52559 * 298.25906 * 13 12 10 15 15 H 1.08999 * 109.50071 * 299.23649 * 14 13 12 16 16 O 1.42898 * 109.53815 * 179.14095 * 14 13 12 17 17 C 1.53117 * 109.27816 * 59.17507 * 14 13 12 18 18 H 1.08997 * 109.51977 * 62.25441 * 17 14 13 19 19 O 1.42896 * 109.57344 * 182.41222 * 17 14 13 20 20 C 1.53038 * 109.46298 * 185.00040 * 10 9 7 21 21 H 1.08995 * 109.50594 * 300.74676 * 20 10 9 22 22 O 1.42903 * 109.49956 * 60.82589 * 20 10 9 23 23 H 0.96999 * 120.00128 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47047 * 300.00890 * 9 7 2 25 25 H 1.09001 * 109.46702 * 60.00291 * 9 7 2 26 26 H 1.00905 * 111.00137 * 305.85192 * 12 10 9 27 27 H 1.09002 * 109.46176 * 178.24119 * 13 12 10 28 28 H 1.09003 * 109.45264 * 58.27281 * 13 12 10 29 29 H 0.96699 * 114.00178 * 60.17230 * 16 14 13 30 30 H 0.96702 * 114.00075 * 299.71550 * 19 17 14 31 31 H 0.96708 * 113.99539 * 180.02562 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 1.4645 -2.1294 -0.0058 9 6 3.5115 -1.1940 -0.0121 10 6 4.0215 -2.6365 -0.0183 11 1 3.5907 -3.1777 0.8240 12 7 3.6266 -3.2896 -1.2728 13 6 4.0619 -4.6919 -1.3014 14 6 5.5888 -4.7552 -1.2202 15 1 6.0205 -4.2358 -2.0758 16 8 6.0116 -6.1202 -1.2278 17 6 6.0546 -4.0829 0.0742 18 1 5.6546 -4.6254 0.9307 19 8 7.4825 -4.0886 0.1296 20 6 5.5472 -2.6384 0.1010 21 1 5.9783 -2.0857 -0.7337 22 8 5.9303 -2.0202 1.3311 23 1 -0.4850 0.8400 0.0004 24 1 3.8711 -0.6780 -0.9023 25 1 3.8785 -0.6824 0.8776 26 1 2.6311 -3.2170 -1.4206 27 1 3.7279 -5.1570 -2.2288 28 1 3.6308 -5.2231 -0.4528 29 1 5.7502 -6.6085 -2.0205 30 1 7.8731 -4.9731 0.1163 31 1 6.8862 -1.9862 1.4733 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238703443.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:20 Heat of formation + Delta-G solvation = -184.793926 kcal Electronic energy + Delta-G solvation = -15507.860574 eV Core-core repulsion = 12787.526574 eV Total energy + Delta-G solvation = -2720.334000 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 217.115 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.88383 -37.90116 -37.30291 -36.16719 -34.88352 -32.38846 -30.74224 -28.70044 -25.22325 -24.01812 -22.22656 -21.06482 -19.18834 -19.02124 -18.17947 -17.76543 -16.53238 -16.49942 -16.14761 -15.82883 -15.32821 -14.85218 -14.67378 -14.40990 -14.11118 -13.45816 -13.29242 -13.10977 -12.71091 -12.49918 -12.25910 -11.78409 -11.55916 -11.28898 -11.13200 -10.95970 -10.88827 -10.74134 -9.45970 -8.28208 -6.30527 1.37378 1.38151 1.50963 2.37721 2.68088 3.00060 3.07355 3.26577 3.53375 3.74330 3.85865 3.92998 4.14387 4.23649 4.48525 4.61445 4.68422 4.77882 4.79206 4.98472 5.29899 5.36281 5.62896 6.07060 6.21741 6.38705 6.62736 6.72436 6.77134 6.83575 7.33418 8.87531 Molecular weight = 217.11amu Principal moments of inertia in cm(-1) A = 0.043134 B = 0.008665 C = 0.007555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.990339 B = 3230.523104 C = 3705.496100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.010 3.990 3 Si 0.945 3.055 4 H -0.273 1.273 5 H -0.251 1.251 6 H -0.283 1.283 7 C -0.520 4.520 8 H 0.040 0.960 9 C 0.003 3.997 10 C 0.114 3.886 11 H 0.020 0.980 12 N -0.677 5.677 13 C 0.024 3.976 14 C 0.090 3.910 15 H 0.076 0.924 16 O -0.571 6.571 17 C 0.090 3.910 18 H 0.054 0.946 19 O -0.567 6.567 20 C 0.127 3.873 21 H 0.066 0.934 22 O -0.569 6.569 23 H 0.266 0.734 24 H 0.024 0.976 25 H 0.021 0.979 26 H 0.359 0.641 27 H 0.106 0.894 28 H 0.029 0.971 29 H 0.402 0.598 30 H 0.398 0.602 31 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.982 -9.918 -3.391 17.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.187 4.187 3 Si 0.769 3.231 4 H -0.198 1.198 5 H -0.175 1.175 6 H -0.208 1.208 7 C -0.558 4.558 8 H 0.059 0.941 9 C -0.035 4.035 10 C 0.004 3.996 11 H 0.038 0.962 12 N -0.314 5.314 13 C -0.106 4.106 14 C 0.030 3.970 15 H 0.093 0.907 16 O -0.379 6.379 17 C 0.030 3.970 18 H 0.072 0.928 19 O -0.376 6.376 20 C 0.067 3.933 21 H 0.084 0.916 22 O -0.376 6.376 23 H 0.074 0.926 24 H 0.042 0.958 25 H 0.039 0.961 26 H 0.181 0.819 27 H 0.124 0.876 28 H 0.047 0.953 29 H 0.254 0.746 30 H 0.249 0.751 31 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 13.912 -8.738 -3.080 16.715 hybrid contribution -0.551 -0.465 0.167 0.740 sum 13.361 -9.202 -2.914 16.483 Atomic orbital electron populations 1.70041 1.07984 1.28019 1.52723 1.25849 0.95508 1.03084 0.94246 0.85737 0.79532 0.78962 0.78859 1.19808 1.17474 1.20825 1.21286 0.91243 0.93209 1.50111 0.94146 1.19455 0.94384 0.92960 0.96715 1.21076 0.91684 0.96549 0.90290 0.96164 1.60140 1.22604 1.14173 1.34448 1.22731 0.95936 0.89500 1.02461 1.22237 0.93088 0.83362 0.98300 0.90660 1.86358 1.80471 1.22407 1.48682 1.22441 0.82017 0.96345 0.96192 0.92836 1.86324 1.18295 1.35869 1.97094 1.21599 0.94197 0.90267 0.87201 0.91626 1.86480 1.29934 1.81637 1.39539 0.92556 0.95757 0.96094 0.81939 0.87617 0.95300 0.74638 0.75130 0.75598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.03 13.96 21.45 0.30 -58.73 16 2 C 0.01 0.60 5.47 84.65 0.46 1.07 16 3 Si 0.94 45.50 27.47 68.60 1.88 47.38 16 4 H -0.27 -12.85 7.11 99.48 0.71 -12.15 16 5 H -0.25 -11.47 6.54 99.48 0.65 -10.81 16 6 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 7 C -0.52 -29.66 8.94 25.60 0.23 -29.43 16 8 H 0.04 2.46 7.41 -2.91 -0.02 2.44 16 9 C 0.00 0.12 3.65 29.85 0.11 0.23 16 10 C 0.11 4.66 2.18 44.94 0.10 4.76 16 11 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 12 N -0.68 -24.26 6.50 -491.68 -3.20 -27.46 16 13 C 0.02 0.64 6.18 86.32 0.53 1.17 16 14 C 0.09 2.19 3.31 30.65 0.10 2.29 16 15 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 16 O -0.57 -10.92 12.91 -142.20 -1.84 -12.76 16 17 C 0.09 2.55 2.92 30.67 0.09 2.64 16 18 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 19 O -0.57 -13.95 12.91 -132.11 -1.71 -15.65 16 20 C 0.13 4.39 2.76 30.65 0.08 4.48 16 21 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 22 O -0.57 -19.76 12.60 -142.16 -1.79 -21.55 16 23 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 24 H 0.02 1.18 7.20 -2.39 -0.02 1.17 16 25 H 0.02 1.05 6.99 -2.39 -0.02 1.03 16 26 H 0.36 14.18 7.48 -89.69 -0.67 13.50 16 27 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16 28 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.40 4.08 9.08 -74.06 -0.67 3.41 16 30 H 0.40 7.11 8.70 -74.06 -0.64 6.47 16 31 H 0.39 10.26 8.69 -74.05 -0.64 9.61 16 Total: -1.00 -68.89 255.23 -6.15 -75.04 By element: Atomic # 1 Polarization: 28.04 SS G_CDS: -1.51 Total: 26.53 kcal Atomic # 6 Polarization: -14.51 SS G_CDS: 1.71 Total: -12.80 kcal Atomic # 7 Polarization: -83.29 SS G_CDS: -2.90 Total: -86.19 kcal Atomic # 8 Polarization: -44.63 SS G_CDS: -5.33 Total: -49.96 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 1.88 Total: 47.38 kcal Total: -68.89 -6.15 -75.04 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238703443.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.755 kcal (2) G-P(sol) polarization free energy of solvation -68.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds