Wall clock time and date at job start Mon Mar 30 2020 03:07:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.50229 * 2 1 4 4 C 1.53029 * 109.50721 * 239.92271 * 2 1 3 5 5 N 1.46850 * 109.52250 * 299.20151 * 4 2 1 6 6 C 1.46906 * 111.00070 * 174.16070 * 5 4 2 7 7 C 1.46844 * 111.19834 * 298.25397 * 5 4 2 8 8 C 1.53046 * 109.52043 * 61.74270 * 7 5 4 9 9 H 1.08998 * 109.50093 * 60.80340 * 8 7 5 10 10 C 1.50699 * 109.50023 * 180.88117 * 8 7 5 11 11 H 1.08003 * 119.99885 * 114.36525 * 10 8 7 12 12 C 1.37872 * 119.99797 * 294.35733 * 10 8 7 13 13 N 1.31522 * 119.99724 * 162.10460 * 12 10 8 14 14 Si 1.86801 * 120.00321 * 342.10212 * 12 10 8 15 15 H 1.48504 * 109.46958 * 179.97438 * 14 12 10 16 16 H 1.48492 * 109.47009 * 60.00050 * 14 12 10 17 17 H 1.48501 * 109.47163 * 299.99754 * 14 12 10 18 18 C 1.53120 * 109.30874 * 300.84043 * 8 7 5 19 19 H 1.09001 * 109.52239 * 297.73034 * 18 8 7 20 20 Cl 1.80299 * 109.52031 * 177.53926 * 18 8 7 21 21 H 1.08998 * 109.47333 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47591 * 300.07996 * 1 2 3 23 23 H 1.09010 * 109.46642 * 60.07718 * 1 2 3 24 24 H 1.08997 * 109.47013 * 179.18406 * 4 2 1 25 25 H 1.09009 * 109.45720 * 59.20683 * 4 2 1 26 26 H 1.09000 * 109.47040 * 188.16446 * 6 5 4 27 27 H 1.09000 * 109.46554 * 308.16243 * 6 5 4 28 28 H 1.09000 * 109.47155 * 68.16249 * 6 5 4 29 29 H 1.09001 * 109.46625 * 301.72908 * 7 5 4 30 30 H 1.08997 * 109.45383 * 181.75147 * 7 5 4 31 31 H 0.96992 * 120.00052 * 354.64232 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0410 -0.7229 -1.2482 5 7 1.5684 -2.1132 -1.2381 6 6 1.9232 -2.7990 -2.4879 7 6 2.0862 -2.8416 -0.0730 8 6 1.5765 -2.1819 1.2105 9 1 0.4873 -2.2175 1.2301 10 6 2.1256 -2.9167 2.4061 11 1 2.8150 -2.4218 3.0742 12 6 1.7478 -4.2205 2.6472 13 7 2.4640 -4.9744 3.4525 14 14 0.2188 -4.9163 1.8301 15 1 0.0327 -6.3287 2.2495 16 1 0.3747 -4.8549 0.3547 17 1 -0.9660 -4.1186 2.2364 18 6 2.0412 -0.7234 1.2490 19 1 3.1304 -0.6885 1.2693 20 17 1.3835 0.0797 2.7232 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3634 0.5151 0.8892 23 1 -0.3633 0.5127 -0.8908 24 1 3.1309 -0.7099 -1.2550 25 1 1.6663 -0.2185 -2.1390 26 1 1.4395 -3.7754 -2.5165 27 1 1.5888 -2.2028 -3.3369 28 1 3.0045 -2.9275 -2.5375 29 1 3.1759 -2.8187 -0.0851 30 1 1.7443 -3.8759 -0.1101 31 1 3.2989 -4.6398 3.8154 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238805013.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:03 Heat of formation + Delta-G solvation = -19.405616 kcal Electronic energy + Delta-G solvation = -13731.353898 eV Core-core repulsion = 11458.900838 eV Total energy + Delta-G solvation = -2272.453060 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 217.093 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.87944 -35.10554 -33.41011 -33.06290 -30.61732 -26.63638 -25.94757 -24.64583 -21.88564 -20.86065 -18.07736 -17.57231 -15.49896 -14.59433 -14.50217 -14.20636 -13.69868 -13.50351 -13.06616 -12.57519 -11.86049 -11.77924 -11.74645 -11.33978 -10.98700 -10.89203 -10.63988 -10.43265 -10.18429 -9.88851 -9.80311 -9.40901 -9.11070 -8.79895 -8.24841 -7.82230 -6.42848 -4.05255 3.17204 3.41377 3.49288 3.65170 4.42248 4.52543 5.07920 5.25975 5.34390 5.38776 5.56546 5.73270 5.78951 5.87402 5.95572 6.10724 6.13278 6.23591 6.36987 6.39006 6.44224 6.53298 6.84120 6.97173 7.28444 7.55121 7.57542 8.09409 8.41575 8.91928 9.61408 10.94973 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.023858 B = 0.016158 C = 0.011490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.343147 B = 1732.465537 C = 2436.345050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.095 4.095 3 H 0.070 0.930 4 C 0.066 3.934 5 N -0.547 5.547 6 C 0.027 3.973 7 C 0.050 3.950 8 C 0.024 3.976 9 H 0.045 0.955 10 C -0.592 4.592 11 H 0.062 0.938 12 C 0.036 3.964 13 N -0.905 5.905 14 Si 1.035 2.965 15 H -0.288 1.288 16 H -0.272 1.272 17 H -0.281 1.281 18 C 0.032 3.968 19 H 0.080 0.920 20 Cl -0.197 7.197 21 H 0.073 0.927 22 H 0.056 0.944 23 H 0.044 0.956 24 H 0.027 0.973 25 H 0.071 0.929 26 H 0.065 0.935 27 H 0.059 0.941 28 H 0.019 0.981 29 H 0.026 0.974 30 H 0.080 0.920 31 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.833 7.482 -9.937 12.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.114 4.114 3 H 0.088 0.912 4 C -0.062 4.062 5 N -0.272 5.272 6 C -0.122 4.122 7 C -0.077 4.077 8 C 0.004 3.996 9 H 0.063 0.937 10 C -0.630 4.630 11 H 0.080 0.920 12 C -0.169 4.169 13 N -0.538 5.538 14 Si 0.864 3.136 15 H -0.214 1.214 16 H -0.199 1.199 17 H -0.207 1.207 18 C -0.012 4.012 19 H 0.098 0.902 20 Cl -0.170 7.170 21 H 0.092 0.908 22 H 0.075 0.925 23 H 0.063 0.937 24 H 0.046 0.954 25 H 0.089 0.911 26 H 0.084 0.916 27 H 0.078 0.922 28 H 0.038 0.962 29 H 0.045 0.955 30 H 0.099 0.901 31 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.347 6.195 -9.847 12.106 hybrid contribution 2.008 1.393 0.091 2.446 sum -1.338 7.588 -9.757 12.432 Atomic orbital electron populations 1.21786 0.93887 1.03380 1.00617 1.21521 0.98009 0.98249 0.93630 0.91188 1.22018 0.96829 0.89919 0.97465 1.62078 1.60209 1.01844 1.03028 1.22303 0.98239 0.99456 0.92164 1.22922 0.96939 0.98648 0.89185 1.19347 0.97733 0.88899 0.93599 0.93747 1.21904 1.31443 0.99329 1.10324 0.91957 1.25687 1.01664 0.93456 0.96140 1.70833 1.13855 1.37784 1.31331 0.84194 0.76697 0.76203 0.76532 1.21406 1.19867 1.20727 1.24141 0.98495 0.95902 0.82649 0.90219 1.98645 1.89004 1.82707 1.46675 0.90784 0.92547 0.93667 0.95441 0.91061 0.91611 0.92210 0.96199 0.95527 0.90143 0.92199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 8.51 37.16 0.32 -1.94 16 2 C -0.09 -1.56 2.83 -90.54 -0.26 -1.81 16 3 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 4 C 0.07 1.03 4.90 -3.84 -0.02 1.01 16 5 N -0.55 -9.63 4.20 -242.95 -1.02 -10.65 16 6 C 0.03 0.39 9.62 60.07 0.58 0.97 16 7 C 0.05 1.06 4.43 -3.83 -0.02 1.04 16 8 C 0.02 0.54 1.06 -91.69 -0.10 0.45 16 9 H 0.04 1.07 5.24 -51.93 -0.27 0.79 16 10 C -0.59 -16.05 8.23 -34.44 -0.28 -16.34 16 11 H 0.06 1.84 7.95 -52.48 -0.42 1.43 16 12 C 0.04 1.01 5.33 -17.82 -0.10 0.92 16 13 N -0.90 -27.40 13.70 55.43 0.76 -26.64 16 14 Si 1.04 25.03 26.39 -169.99 -4.49 20.54 16 15 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 16 H -0.27 -6.05 5.60 56.52 0.32 -5.73 16 17 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 18 C 0.03 0.64 2.41 -26.61 -0.06 0.57 16 19 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 20 Cl -0.20 -4.02 26.59 -51.86 -1.38 -5.40 16 21 H 0.07 1.35 6.01 -51.93 -0.31 1.03 16 22 H 0.06 0.92 6.98 -51.93 -0.36 0.56 16 23 H 0.04 0.62 8.14 -51.92 -0.42 0.20 16 24 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.07 0.95 8.04 -51.92 -0.42 0.53 16 26 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 27 H 0.06 0.73 8.02 -51.93 -0.42 0.32 16 28 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.08 1.81 4.82 -51.93 -0.25 1.56 16 31 H 0.27 8.11 8.73 -40.82 -0.36 7.75 16 LS Contribution 250.79 15.07 3.78 3.78 Total: -1.00 -28.70 250.79 -6.93 -35.62 By element: Atomic # 1 Polarization: 2.53 SS G_CDS: -4.64 Total: -2.11 kcal Atomic # 6 Polarization: -15.20 SS G_CDS: 0.06 Total: -15.13 kcal Atomic # 7 Polarization: -37.04 SS G_CDS: -0.26 Total: -37.30 kcal Atomic # 14 Polarization: 25.03 SS G_CDS: -4.49 Total: 20.54 kcal Atomic # 17 Polarization: -4.02 SS G_CDS: -1.38 Total: -5.40 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -28.70 -6.93 -35.62 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238805013.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.219 kcal (2) G-P(sol) polarization free energy of solvation -28.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds