Wall clock time and date at job start Mon Mar 30 2020 03:07:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.50229 * 2 1 4 4 C 1.53029 * 109.50721 * 239.92271 * 2 1 3 5 5 N 1.46850 * 109.52250 * 299.20151 * 4 2 1 6 6 C 1.46906 * 111.00070 * 174.16070 * 5 4 2 7 7 C 1.46844 * 111.19834 * 298.25397 * 5 4 2 8 8 C 1.53046 * 109.52043 * 61.74270 * 7 5 4 9 9 H 1.08998 * 109.50093 * 60.80340 * 8 7 5 10 10 C 1.50699 * 109.50023 * 180.88117 * 8 7 5 11 11 H 1.08003 * 119.99885 * 114.36525 * 10 8 7 12 12 C 1.37872 * 119.99797 * 294.35733 * 10 8 7 13 13 N 1.31522 * 119.99724 * 162.10460 * 12 10 8 14 14 Si 1.86801 * 120.00321 * 342.10212 * 12 10 8 15 15 H 1.48504 * 109.46958 * 179.97438 * 14 12 10 16 16 H 1.48492 * 109.47009 * 60.00050 * 14 12 10 17 17 H 1.48501 * 109.47163 * 299.99754 * 14 12 10 18 18 C 1.53120 * 109.30874 * 300.84043 * 8 7 5 19 19 H 1.09001 * 109.52239 * 297.73034 * 18 8 7 20 20 Cl 1.80299 * 109.52031 * 177.53926 * 18 8 7 21 21 H 1.08998 * 109.47333 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47591 * 300.07996 * 1 2 3 23 23 H 1.09010 * 109.46642 * 60.07718 * 1 2 3 24 24 H 1.08997 * 109.47013 * 179.18406 * 4 2 1 25 25 H 1.09009 * 109.45720 * 59.20683 * 4 2 1 26 26 H 1.09000 * 109.47040 * 188.16446 * 6 5 4 27 27 H 1.09000 * 109.46554 * 308.16243 * 6 5 4 28 28 H 1.09000 * 109.47155 * 68.16249 * 6 5 4 29 29 H 1.09001 * 109.46625 * 301.72908 * 7 5 4 30 30 H 1.08997 * 109.45383 * 181.75147 * 7 5 4 31 31 H 0.96992 * 120.00052 * 354.64232 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0410 -0.7229 -1.2482 5 7 1.5684 -2.1132 -1.2381 6 6 1.9232 -2.7990 -2.4879 7 6 2.0862 -2.8416 -0.0730 8 6 1.5765 -2.1819 1.2105 9 1 0.4873 -2.2175 1.2301 10 6 2.1256 -2.9167 2.4061 11 1 2.8150 -2.4218 3.0742 12 6 1.7478 -4.2205 2.6472 13 7 2.4640 -4.9744 3.4525 14 14 0.2188 -4.9163 1.8301 15 1 0.0327 -6.3287 2.2495 16 1 0.3747 -4.8549 0.3547 17 1 -0.9660 -4.1186 2.2364 18 6 2.0412 -0.7234 1.2490 19 1 3.1304 -0.6885 1.2693 20 17 1.3835 0.0797 2.7232 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3634 0.5151 0.8892 23 1 -0.3633 0.5127 -0.8908 24 1 3.1309 -0.7099 -1.2550 25 1 1.6663 -0.2185 -2.1390 26 1 1.4395 -3.7754 -2.5165 27 1 1.5888 -2.2028 -3.3369 28 1 3.0045 -2.9275 -2.5375 29 1 3.1759 -2.8187 -0.0851 30 1 1.7443 -3.8759 -0.1101 31 1 3.2989 -4.6398 3.8154 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238805013.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:03 Heat of formation + Delta-G solvation = -38.139858 kcal Electronic energy + Delta-G solvation = -13732.166276 eV Core-core repulsion = 11458.900838 eV Total energy + Delta-G solvation = -2273.265438 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 217.093 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.35073 -36.67465 -35.34459 -34.52319 -32.47137 -27.85881 -27.36589 -26.54240 -23.31637 -22.57726 -19.73679 -19.53996 -16.97282 -16.08343 -15.89240 -15.80641 -15.40841 -15.20753 -14.49777 -14.11339 -13.60887 -13.31782 -13.10754 -12.81774 -12.49046 -12.41560 -12.19556 -12.06572 -11.72523 -11.62238 -11.48743 -11.11489 -10.81227 -10.71794 -10.39586 -9.19528 -8.68084 -6.30315 1.47189 1.53587 1.57870 1.73200 2.50828 2.99922 3.19449 3.74057 3.84743 4.06803 4.31441 4.40800 4.50077 4.55009 4.61717 4.72788 4.77944 4.87048 4.94009 5.04269 5.15015 5.21425 5.26573 5.40944 5.66765 5.86251 6.10418 6.22756 6.28846 6.63366 7.44002 8.68545 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.023858 B = 0.016158 C = 0.011490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.343147 B = 1732.465537 C = 2436.345050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.090 4.090 3 H 0.095 0.905 4 C 0.066 3.934 5 N -0.553 5.553 6 C 0.025 3.975 7 C 0.062 3.938 8 C 0.025 3.975 9 H 0.039 0.961 10 C -0.587 4.587 11 H 0.025 0.975 12 C -0.013 4.013 13 N -0.940 5.940 14 Si 1.072 2.928 15 H -0.294 1.294 16 H -0.239 1.239 17 H -0.271 1.271 18 C 0.031 3.969 19 H 0.069 0.931 20 Cl -0.205 7.205 21 H 0.052 0.948 22 H 0.049 0.951 23 H 0.075 0.925 24 H 0.030 0.970 25 H 0.108 0.892 26 H 0.064 0.936 27 H 0.091 0.909 28 H 0.021 0.979 29 H 0.012 0.988 30 H 0.065 0.935 31 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.974 8.761 -12.719 15.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.108 4.108 3 H 0.113 0.887 4 C -0.062 4.062 5 N -0.277 5.277 6 C -0.123 4.123 7 C -0.066 4.066 8 C 0.005 3.995 9 H 0.057 0.943 10 C -0.625 4.625 11 H 0.043 0.957 12 C -0.211 4.211 13 N -0.576 5.576 14 Si 0.894 3.106 15 H -0.220 1.220 16 H -0.164 1.164 17 H -0.197 1.197 18 C -0.013 4.013 19 H 0.088 0.912 20 Cl -0.179 7.179 21 H 0.071 0.929 22 H 0.068 0.932 23 H 0.094 0.906 24 H 0.048 0.952 25 H 0.126 0.874 26 H 0.082 0.918 27 H 0.110 0.890 28 H 0.040 0.960 29 H 0.030 0.970 30 H 0.084 0.916 31 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -4.480 7.504 -12.653 15.378 hybrid contribution 2.424 1.075 0.980 2.827 sum -2.056 8.579 -11.672 14.631 Atomic orbital electron populations 1.21737 0.93385 1.02310 1.01827 1.21561 0.98330 0.99138 0.91816 0.88719 1.22153 0.97149 0.88691 0.98230 1.62016 1.60167 1.02750 1.02792 1.22403 0.98527 0.99834 0.91492 1.22510 0.95887 0.98063 0.90139 1.19230 0.97060 0.90502 0.92672 0.94272 1.22070 1.29899 0.99329 1.11185 0.95700 1.26945 1.03668 0.94359 0.96174 1.70953 1.14174 1.38679 1.33824 0.83742 0.73729 0.75301 0.77796 1.22000 1.16399 1.19678 1.24177 0.98051 0.94859 0.84213 0.91247 1.98643 1.89019 1.82640 1.47586 0.92892 0.93238 0.90629 0.95206 0.87404 0.91758 0.89025 0.95993 0.96961 0.91648 0.93844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.90 8.51 71.98 0.61 -3.29 16 2 C -0.09 -2.64 2.83 -10.74 -0.03 -2.67 16 3 H 0.09 2.39 8.14 -2.38 -0.02 2.37 16 4 C 0.07 1.76 4.90 86.32 0.42 2.18 16 5 N -0.55 -17.59 4.20 -922.56 -3.87 -21.46 16 6 C 0.03 0.64 9.62 127.69 1.23 1.87 16 7 C 0.06 2.53 4.43 86.33 0.38 2.92 16 8 C 0.02 1.12 1.06 -11.48 -0.01 1.11 16 9 H 0.04 1.83 5.24 -2.39 -0.01 1.82 16 10 C -0.59 -32.57 8.23 25.60 0.21 -32.36 16 11 H 0.02 1.53 7.95 -2.91 -0.02 1.51 16 12 C -0.01 -0.75 5.33 84.65 0.45 -0.30 16 13 N -0.94 -58.94 13.70 21.45 0.29 -58.65 16 14 Si 1.07 50.36 26.39 68.60 1.81 52.17 16 15 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 16 H -0.24 -9.94 5.60 99.48 0.56 -9.39 16 17 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 18 C 0.03 1.19 2.41 30.67 0.07 1.27 16 19 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 20 Cl -0.21 -8.29 26.59 -2.72 -0.07 -8.36 16 21 H 0.05 1.76 6.01 -2.39 -0.01 1.75 16 22 H 0.05 1.48 6.98 -2.39 -0.02 1.46 16 23 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 24 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 25 H 0.11 2.20 8.04 -2.38 -0.02 2.18 16 26 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.09 1.76 8.02 -2.39 -0.02 1.75 16 28 H 0.02 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.07 2.84 4.82 -2.39 -0.01 2.83 16 31 H 0.25 16.08 8.73 -92.71 -0.81 15.27 16 Total: -1.00 -63.35 250.79 2.41 -60.94 By element: Atomic # 1 Polarization: 3.72 SS G_CDS: 0.91 Total: 4.63 kcal Atomic # 6 Polarization: -32.61 SS G_CDS: 3.34 Total: -29.27 kcal Atomic # 7 Polarization: -76.53 SS G_CDS: -3.58 Total: -80.11 kcal Atomic # 14 Polarization: 50.36 SS G_CDS: 1.81 Total: 52.17 kcal Atomic # 17 Polarization: -8.29 SS G_CDS: -0.07 Total: -8.36 kcal Total: -63.35 2.41 -60.94 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238805013.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.804 kcal (2) G-P(sol) polarization free energy of solvation -63.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds