Wall clock time and date at job start Mon Mar 30 2020 03:17:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36015 * 126.34187 * 2 1 4 4 N 1.30116 * 110.11594 * 179.73362 * 3 2 1 5 5 C 1.35813 * 109.64909 * 0.38520 * 4 3 2 6 6 C 1.39665 * 133.48569 * 179.91624 * 5 4 3 7 7 C 1.38421 * 119.69409 * 179.67954 * 6 5 4 8 8 N 1.39440 * 119.83507 * 179.97438 * 7 6 5 9 9 C 1.36835 * 120.00099 * 180.02562 * 8 7 6 10 10 H 1.08003 * 119.99966 * 359.97438 * 9 8 7 11 11 C 1.38760 * 120.00138 * 180.02562 * 9 8 7 12 12 N 1.31622 * 120.00037 * 359.97438 * 11 9 8 13 13 Si 1.86795 * 120.00141 * 179.97438 * 11 9 8 14 14 H 1.48505 * 109.47045 * 60.00081 * 13 11 9 15 15 H 1.48503 * 109.47447 * 179.97438 * 13 11 9 16 16 H 1.48502 * 109.47534 * 299.99920 * 13 11 9 17 17 C 1.39570 * 120.33387 * 359.97438 * 7 6 5 18 18 C 1.37655 * 120.37259 * 0.03680 * 17 7 6 19 19 C 1.38186 * 126.34962 * 179.97438 * 2 1 3 20 20 H 1.08997 * 109.46548 * 270.03492 * 1 2 3 21 21 H 1.08990 * 109.47540 * 30.03996 * 1 2 3 22 22 H 1.09000 * 109.46941 * 150.04369 * 1 2 3 23 23 H 1.07996 * 124.94226 * 359.95013 * 3 2 1 24 24 H 1.08000 * 120.14745 * 359.65985 * 6 5 4 25 25 H 0.96996 * 119.99673 * 359.97438 * 8 7 6 26 26 H 0.96994 * 119.99969 * 180.02562 * 12 11 9 27 27 H 1.07992 * 119.81668 * 180.02562 * 17 7 6 28 28 H 1.07996 * 120.02496 * 179.97438 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2710 1.0956 0.0000 4 7 3.5203 0.7320 0.0057 5 6 3.6015 -0.6237 0.0011 6 6 4.6704 -1.5226 0.0023 7 6 4.4213 -2.8842 0.0031 8 7 5.4863 -3.7843 0.0038 9 6 5.2439 -5.1310 0.0040 10 1 4.2277 -5.4968 0.0041 11 6 6.3037 -6.0267 0.0052 12 7 7.5422 -5.5809 0.0056 13 14 5.9729 -7.8651 0.0062 14 1 5.1969 -8.2291 -1.2065 15 1 7.2631 -8.6003 0.0068 16 1 5.1956 -8.2276 1.2185 17 6 3.1095 -3.3608 0.0032 18 6 2.0498 -2.4822 0.0018 19 6 2.2840 -1.1130 0.0005 20 1 -0.3632 0.0006 1.0277 21 1 -0.3634 0.8895 -0.5144 22 1 -0.3633 -0.8904 -0.5132 23 1 1.9245 2.1185 -0.0008 24 1 5.6866 -1.1569 0.0023 25 1 6.3989 -3.4557 0.0033 26 1 8.2830 -6.2070 0.0060 27 1 2.9247 -4.4248 0.0042 28 1 1.0370 -2.8571 0.0015 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258824635.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:13 Heat of formation + Delta-G solvation = 79.956295 kcal Electronic energy + Delta-G solvation = -13644.848613 eV Core-core repulsion = 11275.596716 eV Total energy + Delta-G solvation = -2369.251898 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.20203 -37.34953 -34.22290 -33.54566 -31.55642 -29.08965 -27.67991 -26.36239 -24.36294 -22.45378 -20.62153 -19.94146 -17.78541 -16.62638 -16.39608 -15.43644 -15.20010 -14.53148 -13.89723 -13.37541 -13.27136 -12.91028 -12.52736 -12.46006 -12.00329 -11.84690 -11.26428 -11.04300 -10.94783 -10.39068 -10.05090 -9.90492 -9.49772 -9.16531 -8.49622 -7.35725 -6.51465 -6.47843 -3.65908 1.82224 2.62532 3.19418 3.19492 3.20994 3.23519 3.57567 4.09623 4.73815 4.88282 4.90237 5.22823 5.24345 5.28944 5.36275 5.45533 5.82357 6.25637 6.35846 6.41487 6.57321 6.86619 7.21296 7.37305 7.42682 7.50668 7.67348 7.83697 7.96096 8.64926 8.83551 9.43682 9.63633 10.69453 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.061493 B = 0.006660 C = 0.006029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 455.224201 B = 4202.922276 C = 4643.001852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.500 5.500 3 C 0.239 3.761 4 N -0.517 5.517 5 C 0.111 3.889 6 C -0.226 4.226 7 C 0.211 3.789 8 N -0.566 5.566 9 C -0.301 4.301 10 H 0.099 0.901 11 C 0.018 3.982 12 N -0.896 5.896 13 Si 0.930 3.070 14 H -0.274 1.274 15 H -0.283 1.283 16 H -0.274 1.274 17 C -0.165 4.165 18 C -0.069 4.069 19 C -0.053 4.053 20 H 0.063 0.937 21 H 0.077 0.923 22 H 0.076 0.924 23 H 0.199 0.801 24 H 0.110 0.890 25 H 0.401 0.599 26 H 0.274 0.726 27 H 0.126 0.874 28 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.051 6.479 -0.083 13.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.195 5.195 3 C -0.046 4.046 4 N -0.239 5.239 5 C -0.006 4.006 6 C -0.257 4.257 7 C 0.090 3.910 8 N -0.171 5.171 9 C -0.431 4.431 10 H 0.117 0.883 11 C -0.185 4.185 12 N -0.534 5.534 13 Si 0.757 3.243 14 H -0.199 1.199 15 H -0.208 1.208 16 H -0.199 1.199 17 C -0.188 4.188 18 C -0.091 4.091 19 C -0.159 4.159 20 H 0.082 0.918 21 H 0.096 0.904 22 H 0.095 0.905 23 H 0.215 0.785 24 H 0.128 0.872 25 H 0.236 0.764 26 H 0.083 0.917 27 H 0.144 0.856 28 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -11.214 6.523 -0.076 12.974 hybrid contribution -0.524 -1.217 0.006 1.325 sum -11.738 5.306 -0.070 12.882 Atomic orbital electron populations 1.21726 0.77863 1.03538 1.02341 1.44919 1.05985 1.05866 1.62712 1.24969 0.85855 0.92760 1.01042 1.70353 1.17795 1.12102 1.23669 1.18464 0.91706 0.88915 1.01485 1.18985 0.96436 0.89552 1.20702 1.17482 0.88430 0.88740 0.96373 1.40908 1.05443 1.04047 1.66710 1.19605 0.94561 0.81113 1.47790 0.88326 1.25232 0.94725 1.00654 0.97893 1.69690 0.98239 1.36006 1.49450 0.85927 0.77678 0.81821 0.78901 1.19906 1.20830 1.19902 1.20463 0.90657 0.98985 1.08728 1.19468 0.97935 0.88786 1.02935 1.18470 0.90808 0.88801 1.17845 0.91823 0.90428 0.90546 0.78480 0.87226 0.76444 0.91653 0.85618 0.87778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.87 11.18 59.85 0.67 1.54 15 2 N -0.50 -7.75 3.21 -123.12 -0.40 -8.14 15 3 C 0.24 3.71 12.50 -89.80 -1.12 2.59 15 4 N -0.52 -10.46 11.27 -12.06 -0.14 -10.59 15 5 C 0.11 2.45 7.22 -84.71 -0.61 1.84 15 6 C -0.23 -5.23 9.94 -38.98 -0.39 -5.62 15 7 C 0.21 4.96 6.61 -83.83 -0.55 4.40 15 8 N -0.57 -14.40 5.44 -9.62 -0.05 -14.45 15 9 C -0.30 -7.80 9.55 -15.13 -0.14 -7.95 15 10 H 0.10 2.41 5.66 -52.48 -0.30 2.11 15 11 C 0.02 0.45 5.50 -17.45 -0.10 0.36 15 12 N -0.90 -24.52 13.05 55.49 0.72 -23.80 15 13 Si 0.93 20.05 29.55 -169.99 -5.02 15.03 15 14 H -0.27 -5.79 7.11 56.52 0.40 -5.39 15 15 H -0.28 -6.10 7.11 56.52 0.40 -5.70 15 16 H -0.27 -5.79 7.11 56.52 0.40 -5.39 15 17 C -0.17 -3.52 9.28 -39.30 -0.36 -3.88 15 18 C -0.07 -1.31 10.03 -39.54 -0.40 -1.71 15 19 C -0.05 -1.04 6.88 -83.88 -0.58 -1.62 15 20 H 0.06 0.55 8.14 -51.93 -0.42 0.13 15 21 H 0.08 0.53 8.14 -51.93 -0.42 0.11 15 22 H 0.08 0.71 8.14 -51.93 -0.42 0.29 15 23 H 0.20 2.00 8.06 -52.49 -0.42 1.58 15 24 H 0.11 2.50 8.06 -52.49 -0.42 2.08 15 25 H 0.40 10.46 7.89 -40.82 -0.32 10.14 15 26 H 0.27 7.10 8.31 -40.82 -0.34 6.76 15 27 H 0.13 2.58 5.92 -52.49 -0.31 2.27 15 28 H 0.10 1.62 8.06 -52.49 -0.42 1.20 15 LS Contribution 248.91 15.07 3.75 3.75 Total: -1.00 -30.75 248.91 -7.32 -38.07 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: -2.60 Total: 10.18 kcal Atomic # 6 Polarization: -6.47 SS G_CDS: -3.59 Total: -10.05 kcal Atomic # 7 Polarization: -57.12 SS G_CDS: 0.14 Total: -56.98 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -30.75 -7.32 -38.07 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258824635.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.025 kcal (2) G-P(sol) polarization free energy of solvation -30.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds