Wall clock time and date at job start Mon Mar 30 2020 03:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36015 * 126.34187 * 2 1 4 4 N 1.30116 * 110.11594 * 179.73362 * 3 2 1 5 5 C 1.35813 * 109.64909 * 0.38520 * 4 3 2 6 6 C 1.39665 * 133.48569 * 179.91624 * 5 4 3 7 7 C 1.38421 * 119.69409 * 179.67954 * 6 5 4 8 8 N 1.39440 * 119.83507 * 179.97438 * 7 6 5 9 9 C 1.36835 * 120.00099 * 180.02562 * 8 7 6 10 10 H 1.08003 * 119.99966 * 359.97438 * 9 8 7 11 11 C 1.38760 * 120.00138 * 180.02562 * 9 8 7 12 12 N 1.31622 * 120.00037 * 359.97438 * 11 9 8 13 13 Si 1.86795 * 120.00141 * 179.97438 * 11 9 8 14 14 H 1.48505 * 109.47045 * 60.00081 * 13 11 9 15 15 H 1.48503 * 109.47447 * 179.97438 * 13 11 9 16 16 H 1.48502 * 109.47534 * 299.99920 * 13 11 9 17 17 C 1.39570 * 120.33387 * 359.97438 * 7 6 5 18 18 C 1.37655 * 120.37259 * 0.03680 * 17 7 6 19 19 C 1.38186 * 126.34962 * 179.97438 * 2 1 3 20 20 H 1.08997 * 109.46548 * 270.03492 * 1 2 3 21 21 H 1.08990 * 109.47540 * 30.03996 * 1 2 3 22 22 H 1.09000 * 109.46941 * 150.04369 * 1 2 3 23 23 H 1.07996 * 124.94226 * 359.95013 * 3 2 1 24 24 H 1.08000 * 120.14745 * 359.65985 * 6 5 4 25 25 H 0.96996 * 119.99673 * 359.97438 * 8 7 6 26 26 H 0.96994 * 119.99969 * 180.02562 * 12 11 9 27 27 H 1.07992 * 119.81668 * 180.02562 * 17 7 6 28 28 H 1.07996 * 120.02496 * 179.97438 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2710 1.0956 0.0000 4 7 3.5203 0.7320 0.0057 5 6 3.6015 -0.6237 0.0011 6 6 4.6704 -1.5226 0.0023 7 6 4.4213 -2.8842 0.0031 8 7 5.4863 -3.7843 0.0038 9 6 5.2439 -5.1310 0.0040 10 1 4.2277 -5.4968 0.0041 11 6 6.3037 -6.0267 0.0052 12 7 7.5422 -5.5809 0.0056 13 14 5.9729 -7.8651 0.0062 14 1 5.1969 -8.2291 -1.2065 15 1 7.2631 -8.6003 0.0068 16 1 5.1956 -8.2276 1.2185 17 6 3.1095 -3.3608 0.0032 18 6 2.0498 -2.4822 0.0018 19 6 2.2840 -1.1130 0.0005 20 1 -0.3632 0.0006 1.0277 21 1 -0.3634 0.8895 -0.5144 22 1 -0.3633 -0.8904 -0.5132 23 1 1.9245 2.1185 -0.0008 24 1 5.6866 -1.1569 0.0023 25 1 6.3989 -3.4557 0.0033 26 1 8.2830 -6.2070 0.0060 27 1 2.9247 -4.4248 0.0042 28 1 1.0370 -2.8571 0.0015 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258824635.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:12 Heat of formation + Delta-G solvation = 60.797328 kcal Electronic energy + Delta-G solvation = -13645.679409 eV Core-core repulsion = 11275.596716 eV Total energy + Delta-G solvation = -2370.082693 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 217.091 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.64349 -39.04824 -35.93704 -34.85302 -33.37315 -30.70104 -29.21681 -27.56409 -26.16445 -23.98293 -22.24714 -21.34790 -19.59445 -18.24852 -17.80376 -16.95525 -16.42109 -16.31586 -15.59344 -14.86530 -14.70022 -14.14793 -14.11781 -13.81370 -13.42238 -13.25925 -12.95185 -12.68773 -12.65856 -12.09321 -11.82890 -11.53577 -10.98694 -10.65385 -10.24533 -8.92541 -8.38417 -8.25546 -5.63288 0.29144 0.98339 1.44247 1.53328 1.55519 2.05247 2.14294 2.33151 2.97187 3.39269 3.43091 3.76823 3.95056 4.12828 4.32666 4.58769 4.69381 4.77982 4.82849 4.84058 5.01349 5.19723 5.46287 5.66743 5.74887 5.81119 5.93777 6.22683 6.59768 6.89119 7.21431 7.58034 7.72762 8.81081 Molecular weight = 217.09amu Principal moments of inertia in cm(-1) A = 0.061493 B = 0.006660 C = 0.006029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 455.224201 B = 4202.922276 C = 4643.001852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.494 5.494 3 C 0.265 3.735 4 N -0.567 5.567 5 C 0.084 3.916 6 C -0.248 4.248 7 C 0.199 3.801 8 N -0.595 5.595 9 C -0.313 4.313 10 H 0.109 0.891 11 C -0.039 4.039 12 N -0.941 5.941 13 Si 1.000 3.000 14 H -0.265 1.265 15 H -0.286 1.286 16 H -0.265 1.265 17 C -0.186 4.186 18 C -0.050 4.050 19 C -0.054 4.054 20 H 0.081 0.919 21 H 0.116 0.884 22 H 0.084 0.916 23 H 0.257 0.743 24 H 0.093 0.907 25 H 0.388 0.612 26 H 0.271 0.729 27 H 0.131 0.869 28 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.006 7.540 -0.111 17.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.186 5.186 3 C -0.020 4.020 4 N -0.290 5.290 5 C -0.034 4.034 6 C -0.278 4.278 7 C 0.082 3.918 8 N -0.202 5.202 9 C -0.443 4.443 10 H 0.127 0.873 11 C -0.236 4.236 12 N -0.582 5.582 13 Si 0.823 3.177 14 H -0.189 1.189 15 H -0.211 1.211 16 H -0.190 1.190 17 C -0.209 4.209 18 C -0.071 4.071 19 C -0.162 4.162 20 H 0.100 0.900 21 H 0.134 0.866 22 H 0.102 0.898 23 H 0.273 0.727 24 H 0.111 0.889 25 H 0.221 0.779 26 H 0.080 0.920 27 H 0.148 0.852 28 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -15.282 7.632 -0.103 17.083 hybrid contribution 0.425 -1.146 0.016 1.222 sum -14.857 6.487 -0.087 16.212 Atomic orbital electron populations 1.22211 0.73826 1.05958 1.04310 1.45301 1.08239 1.04209 1.60869 1.26098 0.84496 0.94860 0.96552 1.70331 1.20935 1.11158 1.26562 1.18706 0.92573 0.90129 1.01964 1.19066 0.96562 0.90171 1.22023 1.17830 0.89176 0.88710 0.96098 1.40926 1.05211 1.04293 1.69801 1.19993 0.95183 0.81608 1.47487 0.87297 1.26179 0.94385 1.05125 0.97954 1.69833 0.99094 1.37205 1.52060 0.84862 0.77351 0.76147 0.79304 1.18949 1.21135 1.18950 1.20605 0.90271 0.99822 1.10226 1.19809 0.99177 0.88248 0.99873 1.18681 0.90850 0.90162 1.16492 0.89997 0.86604 0.89752 0.72734 0.88899 0.77917 0.91994 0.85173 0.83459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.04 11.18 127.77 1.43 2.46 15 2 N -0.49 -12.96 3.21 -543.45 -1.74 -14.71 15 3 C 0.26 7.08 12.50 180.06 2.25 9.33 15 4 N -0.57 -22.06 11.27 -192.06 -2.17 -24.23 15 5 C 0.08 3.68 7.22 39.43 0.28 3.96 15 6 C -0.25 -12.02 9.94 22.66 0.23 -11.80 15 7 C 0.20 9.73 6.61 38.30 0.25 9.99 15 8 N -0.60 -32.06 5.44 -184.34 -1.00 -33.06 15 9 C -0.31 -16.84 9.55 84.04 0.80 -16.03 15 10 H 0.11 5.41 5.66 -2.91 -0.02 5.40 15 11 C -0.04 -2.11 5.50 84.85 0.47 -1.64 15 12 N -0.94 -54.15 13.05 21.64 0.28 -53.86 15 13 Si 1.00 41.97 29.55 68.60 2.03 43.99 15 14 H -0.26 -10.58 7.11 99.48 0.71 -9.87 15 15 H -0.29 -11.97 7.11 99.48 0.71 -11.26 15 16 H -0.26 -10.58 7.11 99.48 0.71 -9.87 15 17 C -0.19 -7.87 9.28 22.45 0.21 -7.66 15 18 C -0.05 -1.75 10.03 22.29 0.22 -1.53 15 19 C -0.05 -1.97 6.88 38.86 0.27 -1.71 15 20 H 0.08 0.89 8.14 -2.39 -0.02 0.87 15 21 H 0.12 0.75 8.14 -2.39 -0.02 0.73 15 22 H 0.08 1.07 8.14 -2.39 -0.02 1.05 15 23 H 0.26 3.49 8.06 -2.91 -0.02 3.46 15 24 H 0.09 4.62 8.06 -2.91 -0.02 4.60 15 25 H 0.39 21.98 7.89 -92.71 -0.73 21.25 15 26 H 0.27 14.78 8.31 -92.71 -0.77 14.01 15 27 H 0.13 5.30 5.92 -2.91 -0.02 5.28 15 28 H 0.15 3.86 8.06 -2.91 -0.02 3.84 15 Total: -1.00 -71.28 248.91 4.27 -67.01 By element: Atomic # 1 Polarization: 29.03 SS G_CDS: 0.46 Total: 29.48 kcal Atomic # 6 Polarization: -21.04 SS G_CDS: 6.41 Total: -14.63 kcal Atomic # 7 Polarization: -121.23 SS G_CDS: -4.63 Total: -125.86 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 2.03 Total: 43.99 kcal Total: -71.28 4.27 -67.01 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258824635.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.809 kcal (2) G-P(sol) polarization free energy of solvation -71.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds